UHGV-0010069

Genome information

Genome length 33,934 bps

CDS count 47

Completeness 90.03% (high-quality)

geNomad score 0.9711

Prediction confidence Confident

Genome information
Genome ID	UHGV-0010069
vOTU ID	vOTU-068916
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-A-D_E_23_1060__NODE_1901_length_33934_cov_10.058097
BioSample	NA
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	90.03% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9711
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - viral or bacterial
viralVerify score	3.35
Jumbo phage	No

Genome content
Genome length	33,934 bps
GC content	27.95%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	94.89%
Average CDS length	687.26 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0010069_2	eggNOG-mapper	411470.RUMGNA_02214	NA	NA
UHGV-0010069_2	Structural annotation	PF08948, MF_01537, NF007541, COG3123	NA	NA
UHGV-0010069_3	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-0010069_3	PHROG	phrog_5717	tail protein	tail
UHGV-0010069_3	UniRef90	UniRef90_A0A4U8Q6R4	Baseplate wedge subunit and tail pin	NA
UHGV-0010069_3	eggNOG-mapper	556261.HMPREF0240_01282	NA	NA
UHGV-0010069_3	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0010069_3	COG	COG4675	Phage tail collar domain	NA
UHGV-0010069_4	Structural annotation	PF17790, NF011770	NA	NA
UHGV-0010069_5	eggNOG-mapper	357276.EL88_12830	Phage minor structural protein	NA
UHGV-0010069_5	COG	COG4926	Phage-related protein	NA
UHGV-0010069_6	eggNOG-mapper	1232449.BAHV02000016_gene1805	NA	NA
UHGV-0010069_7	Structural annotation	PF08703, TIGR01000	NA	NA
UHGV-0010069_8	PHROG	phrog_3287	virion structural protein	head and packaging
UHGV-0010069_8	eggNOG-mapper	445971.ANASTE_00721	NA	NA
UHGV-0010069_8	Structural annotation	PF11134, MF_01282, TIGR03300, COG5276	NA	NA
UHGV-0010069_9	PHROG	phrog_13046	NA	unknown function
UHGV-0010069_9	Structural annotation	PF20387	NA	NA
UHGV-0010069_10	Structural annotation	PF00379	NA	NA
UHGV-0010069_12	PHROG	phrog_267	major head protein	head and packaging
UHGV-0010069_12	UniRef90	UniRef90_A0A7C6CNA9	P22 coat protein-protein 5 domain protein	NA
UHGV-0010069_12	eggNOG-mapper	1232449.BAHV02000016_gene1819	P22 coat protein-protein 5 domain protein	NA
UHGV-0010069_12	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0010069_14	PHROG	phrog_156	portal protein	head and packaging
UHGV-0010069_14	eggNOG-mapper	445971.ANASTE_00716	NA	NA
UHGV-0010069_14	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0010069_16	PHROG	phrog_24361	terminase	head and packaging
UHGV-0010069_16	UniRef90	UniRef90_R6ELB5	Putative terminase large subunit	NA
UHGV-0010069_16	eggNOG-mapper	693746.OBV_23980	phage Terminase large subunit	NA
UHGV-0010069_16	COG	COG4373	Mu-like prophage FluMu protein gp28	NA
UHGV-0010069_16	Structural annotation	PF03237, PF17289, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0010069_17	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0010069_17	UniRef90	UniRef90_A0A4R3MPC9	DNA-packaging protein gp3	NA
UHGV-0010069_17	eggNOG-mapper	931276.Cspa_c57180	DNA-packaging protein gp3	NA
UHGV-0010069_17	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0010069_18	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0010069_18	Pfam	PF07374	NA	DUF1492
UHGV-0010069_18	Structural annotation	PF05263, TIGR01636	NA	NA
UHGV-0010069_20	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0010069_20	UniRef90	UniRef90_R6R5K5	Protein 64 protein	NA
UHGV-0010069_20	eggNOG-mapper	1235792.C808_03090	NA	NA
UHGV-0010069_22	Structural annotation	PF14001, MF_01194, TIGR03318, COG5475	NA	NA
UHGV-0010069_23	eggNOG-mapper	1250232.JQNJ01000001_gene2876	Leucine rich repeats (6 copies)	NA
UHGV-0010069_23	COG	COG4886	Leucine-rich repeat (LRR) protein	NA
UHGV-0010069_23	Structural annotation	NF007410	NA	NA
UHGV-0010069_25	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0010069_25	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0010069_25	UniRef90	UniRef90_A0A1M5X7R7	Putative transcriptional regulator	NA
UHGV-0010069_25	eggNOG-mapper	443254.Marpi_0298	Bacteriophage CI repressor helix-turn-helix domain	NA
UHGV-0010069_25	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0010069_25	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0010069_25	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0010069_27	Structural annotation	PF09871, TIGR00739	NA	NA
UHGV-0010069_28	PHROG	phrog_4392	NA	unknown function
UHGV-0010069_31	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0010069_31	PHROG	phrog_216	integrase	integration and excision
UHGV-0010069_31	UniRef90	UniRef90_A0A0A6VDW0	Integrase	NA
UHGV-0010069_31	eggNOG-mapper	755731.Clo1100_0541	integrase family	NA
UHGV-0010069_31	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0010069_31	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0010069_31	Structural annotation	PF00589, MF_02055, NF040815, COG4973	NA	NA
UHGV-0010069_34	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0010069_34	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0010069_34	UniRef90	UniRef90_R5ZPV6	DNA helicase	NA
UHGV-0010069_34	eggNOG-mapper	289376.THEYE_A0337	Participates in initiation and elongation during chromosome replication	NA
UHGV-0010069_34	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0010069_34	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0010069_34	COG	COG0305	Replicative DNA helicase	NA
UHGV-0010069_34	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0010069_35	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-0010069_35	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0010069_35	UniRef90	UniRef90_UPI0011C34505	conserved phage C-terminal domain-containing protein	NA
UHGV-0010069_35	eggNOG-mapper	1232446.BAIE02000002_gene816	NA	NA
UHGV-0010069_35	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0010069_35	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0010069_35	Structural annotation	PF05584, PF07261, MF_01819, TIGR01446, NF040939, COG3935	NA	NA
UHGV-0010069_36	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0010069_36	UniRef90	UniRef90_R7IWH8	HNHc domain-containing protein	NA
UHGV-0010069_36	eggNOG-mapper	1235800.C819_02254	HNH nucleases	NA
UHGV-0010069_36	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0010069_40	UniRef90	UniRef90_A0A2P2BQA5	Cro/C1-type HTH domain profile	NA
UHGV-0010069_40	eggNOG-mapper	293826.Amet_2612	Helix-turn-helix XRE-family like proteins	NA
UHGV-0010069_40	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0010069_40	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0010069_40	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0010069_41	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0010069_41	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0010069_41	UniRef90	UniRef90_A0A1Q6LHM3	HTH cro/C1-type domain-containing protein	NA
UHGV-0010069_41	eggNOG-mapper	588581.Cpap_4192	PFAM Helix-turn-helix	NA
UHGV-0010069_41	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0010069_41	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0010069_41	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0010069_42	PHROG	phrog_87	metallo-protease	other
UHGV-0010069_42	UniRef90	UniRef90_R5PN39	NA	NA
UHGV-0010069_42	eggNOG-mapper	521098.Aaci_0464	IrrE N-terminal-like domain	NA
UHGV-0010069_42	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0010069_42	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0010069_42	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0010069_45	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0010069_45	PHROG	phrog_95	integrase	integration and excision
UHGV-0010069_45	UniRef90	UniRef90_A0A6L9EQU7	Recombinase family protein	NA
UHGV-0010069_45	eggNOG-mapper	1196322.A370_02635	Resolvase, N terminal domain	NA
UHGV-0010069_45	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0010069_45	Pfam	PF07508	Recombinase	Recombinase
UHGV-0010069_45	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0010069_45	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0010069_45	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-0010069_46	KOfam	K02356	efp; elongation factor P	NA
UHGV-0010069_46	UniRef90	UniRef90_R6XLF2	Elongation factor P	NA
UHGV-0010069_46	eggNOG-mapper	1232443.BAIA02000084_gene784	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase	NA
UHGV-0010069_46	Pfam	PF08207	Elongation factor P (EF-P) KOW-like domain	EFP_N
UHGV-0010069_46	Pfam	PF01132	Elongation factor P (EF-P) OB domain	EFP
UHGV-0010069_46	Pfam	PF09285	Elongation factor P, C-terminal	Elong-fact-P_C
UHGV-0010069_46	NCBIFam	NF001810.0	elongation factor P	NA
UHGV-0010069_46	COG	COG0231	Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A)	NA
UHGV-0010069_46	HAMAP	MF_00141	Elongation factor P [efp]	NA