UHGV-0010217

Genome information

Genome length 21,098 bps

CDS count 32

Completeness 86.38% (medium-quality)

geNomad score 0.9772

Prediction confidence Confident

Genome information
Genome ID	UHGV-0010217
vOTU ID	vOTU-042363
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Nepal_MoBio_Fiber-Hadza-Nepal_B_21_THA1063YZ__NODE_1041_length_50184_cov_6.477798_1
BioSample	SAMEA4969189
Country	Nepal
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	86.38% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9772
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.54
Jumbo phage	No

Genome content
Genome length	21,098 bps
GC content	39.50%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	32
CDS density	90.02%
Average CDS length	596.53 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0010217_3	PHROG	phrog_18108	NA	unknown function
UHGV-0010217_3	Structural annotation	PF07443	NA	NA
UHGV-0010217_4	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0010217_4	PHROG	phrog_95	integrase	integration and excision
UHGV-0010217_4	UniRef90	UniRef90_UPI001E5635E3	recombinase family protein	NA
UHGV-0010217_4	eggNOG-mapper	1157490.EL26_02935	Recombinase	NA
UHGV-0010217_4	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0010217_4	Pfam	PF07508	Recombinase	Recombinase
UHGV-0010217_4	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0010217_4	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-0010217_5	PHROG	phrog_443	holin	lysis
UHGV-0010217_5	UniRef90	UniRef90_R6MWB0	Conserved domain protein	NA
UHGV-0010217_5	eggNOG-mapper	1298920.KI911353_gene2669	Putative lactococcus lactis phage r1t holin	NA
UHGV-0010217_5	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0010217_5	Structural annotation	PF16945	NA	NA
UHGV-0010217_6	PHROG	phrog_1863	NA	unknown function
UHGV-0010217_6	UniRef90	UniRef90_UPI001E345E1F	hemolysin XhlA family protein	NA
UHGV-0010217_6	eggNOG-mapper	1226322.HMPREF1545_04027	NA	NA
UHGV-0010217_7	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0010217_7	PHROG	phrog_833	endolysin	lysis
UHGV-0010217_7	UniRef90	UniRef90_R6MSP5	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0010217_7	eggNOG-mapper	428125.CLOLEP_01782	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0010217_7	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0010217_7	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0010217_7	Structural annotation	PF01510, PF01471, MF_04111, NF008758, COG5632, COG3409	NA	NA
UHGV-0010217_9	UniRef90	UniRef90_A0A1C6HHE5	BppU_N domain-containing protein	NA
UHGV-0010217_9	Structural annotation	PF10651, PF01664	NA	NA
UHGV-0010217_10	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0010217_10	UniRef90	UniRef90_A0A348ZBV6	Prophage_tail domain-containing protein	NA
UHGV-0010217_10	eggNOG-mapper	1160721.RBI_I01574	Prophage endopeptidase tail	NA
UHGV-0010217_10	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0010217_10	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0010217_10	COG	COG4926	Phage-related protein	NA
UHGV-0010217_10	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0010217_11	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0010217_11	UniRef90	UniRef90_UPI00189E4294	phage tail family protein	NA
UHGV-0010217_11	eggNOG-mapper	1160721.RBI_I01575	Phage tail protein	NA
UHGV-0010217_11	COG	COG4722	Phage-related protein YomH	NA
UHGV-0010217_11	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0010217_12	PHROG	phrog_23464	NA	unknown function
UHGV-0010217_12	eggNOG-mapper	665950.HMPREF1025_02660	phage tail tape measure protein	NA
UHGV-0010217_12	COG	COG5283	Phage-related tail protein	NA
UHGV-0010217_12	Structural annotation	COG3941	NA	NA
UHGV-0010217_14	eggNOG-mapper	272562.CA_C0058	NA	NA
UHGV-0010217_15	PHROG	phrog_885	major tail protein	tail
UHGV-0010217_15	UniRef90	UniRef90_A0A101Y2E4	Big_5 domain-containing protein	NA
UHGV-0010217_15	eggNOG-mapper	1321814.HMPREF9089_00935	NA	NA
UHGV-0010217_15	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0010217_16	Structural annotation	PF12691	NA	NA
UHGV-0010217_17	UniRef90	UniRef90_UPI001A9B6FBF	HK97 gp10 family phage protein	NA
UHGV-0010217_17	eggNOG-mapper	1414720.CBYM010000040_gene1650	NA	NA
UHGV-0010217_17	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0010217_17	Structural annotation	TIGR01725	NA	NA
UHGV-0010217_18	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0010217_18	UniRef90	UniRef90_A0A374MZF9	Phage head-tail adapter protein	NA
UHGV-0010217_18	eggNOG-mapper	768704.Desmer_4460	head-tail adaptor	NA
UHGV-0010217_18	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0010217_18	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0010217_18	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0010217_19	PHROG	phrog_5223	neck protein	connector
UHGV-0010217_19	UniRef90	UniRef90_UPI0019613678	head-tail connector protein	NA
UHGV-0010217_19	eggNOG-mapper	931626.Awo_c31020	NA	NA
UHGV-0010217_19	Structural annotation	TIGR01560	NA	NA
UHGV-0010217_20	PHROG	phrog_10	major head protein	head and packaging
UHGV-0010217_20	UniRef90	UniRef90_A0A374N9V9	Phage major capsid protein	NA
UHGV-0010217_20	eggNOG-mapper	1280689.AUJC01000011_gene1521	Phage major capsid protein, HK97 family	NA
UHGV-0010217_20	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0010217_20	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0010217_20	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0010217_20	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0010217_21	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0010217_21	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0010217_21	UniRef90	UniRef90_A0A374NBM3	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0010217_21	eggNOG-mapper	1203606.HMPREF1526_00979	Belongs to the peptidase S14 family	NA
UHGV-0010217_21	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0010217_21	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0010217_21	Structural annotation	PF00574, MF_00444, NF011091, COG0740	NA	NA
UHGV-0010217_22	PHROG	phrog_12	portal protein	head and packaging
UHGV-0010217_22	UniRef90	UniRef90_A0A374NAE1	Phage portal protein	NA
UHGV-0010217_22	eggNOG-mapper	626523.GCWU000342_01027	Portal protein	NA
UHGV-0010217_22	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0010217_22	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0010217_22	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0010217_23	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0010217_23	UniRef90	UniRef90_A0A374NB45	Terminase large subunit	NA
UHGV-0010217_23	eggNOG-mapper	1203606.HMPREF1526_00981	Terminase	NA
UHGV-0010217_23	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0010217_23	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0010217_23	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0010217_23	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0010217_24	PHROG	phrog_1066	NA	unknown function
UHGV-0010217_24	eggNOG-mapper	1203606.HMPREF1526_00982	NA	NA
UHGV-0010217_25	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0010217_25	UniRef90	UniRef90_A0A374N9T6	HNH endonuclease	NA
UHGV-0010217_25	eggNOG-mapper	1235793.C809_01915	HNH endonuclease	NA
UHGV-0010217_25	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0010217_25	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0010217_26	Structural annotation	TIGR01636	NA	NA
UHGV-0010217_27	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0010217_27	eggNOG-mapper	1235800.C819_00515	NA	NA
UHGV-0010217_27	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0010217_29	PHROG	phrog_824	NA	unknown function
UHGV-0010217_29	UniRef90	UniRef90_A0A3D3D6C6	VRR-NUC domain-containing protein	NA
UHGV-0010217_29	eggNOG-mapper	397288.C806_00096	VRR_NUC	NA
UHGV-0010217_29	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0010217_29	Structural annotation	PF08774	NA	NA
UHGV-0010217_31	UniRef90	UniRef90_K1S6I0	Exonuclease RNase T and DNA polymerase III (Fragment)	NA