UHGV-0010289

Genome information

Genome length 26,875 bps

CDS count 40

Completeness 67.70% (medium-quality)

geNomad score 0.9667

Prediction confidence Confident

Genome information
Genome ID	UHGV-0010289
vOTU ID	vOTU-022550
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-A-D_D_16_1621__NODE_6144_length_26875_cov_13.627062
BioSample	NA
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	67.70% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9667
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.46
Jumbo phage	No

Genome content
Genome length	26,875 bps
GC content	37.54%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	40
CDS density	91.54%
Average CDS length	619.65 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0010289_1	eggNOG-mapper	999415.HMPREF9943_00145	NA	NA
UHGV-0010289_4	PHROG	phrog_21357	endolysin	lysis
UHGV-0010289_4	UniRef90	UniRef90_UPI001C37F582	CHAP domain-containing protein	NA
UHGV-0010289_4	eggNOG-mapper	243164.DET1070	SMART Glycoside hydrolase, family 25 subgroup	NA
UHGV-0010289_4	Pfam	PF05257	CHAP domain	CHAP
UHGV-0010289_4	COG	COG1388	LysM repeat	NA
UHGV-0010289_4	Structural annotation	PF08460, PF10030, TIGR02594, NF041850, COG4322, COG4991	NA	NA
UHGV-0010289_5	PHROG	phrog_918	NA	unknown function
UHGV-0010289_5	UniRef90	UniRef90_UPI00115A7D93	NA	NA
UHGV-0010289_5	eggNOG-mapper	1499683.CCFF01000014_gene3910	NA	NA
UHGV-0010289_5	Pfam	PF19791	NA	DUF6275
UHGV-0010289_5	Structural annotation	PF19791	NA	NA
UHGV-0010289_6	PHROG	phrog_199	holin	lysis
UHGV-0010289_6	UniRef90	UniRef90_E2NRB7	Toxin secretion/phage lysis holin	NA
UHGV-0010289_6	eggNOG-mapper	742723.HMPREF9477_00889	Bacteriophage holin family	NA
UHGV-0010289_6	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0010289_6	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0010289_6	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0010289_6	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0010289_7	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0010289_7	Structural annotation	NF040910	NA	NA
UHGV-0010289_9	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0010289_9	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0010289_9	UniRef90	UniRef90_A0A396PAA8	Reverse transcriptase domain-containing protein	NA
UHGV-0010289_9	eggNOG-mapper	478749.BRYFOR_08556	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0010289_9	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0010289_9	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0010289_9	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0010289_9	Structural annotation	PF00078, MF_04065, TIGR04416, COG3344	NA	NA
UHGV-0010289_10	PHROG	phrog_17147	NA	unknown function
UHGV-0010289_10	eggNOG-mapper	478749.BRYFOR_08557	NA	NA
UHGV-0010289_10	Structural annotation	PF16323	NA	NA
UHGV-0010289_11	PHROG	phrog_9994	NA	unknown function
UHGV-0010289_11	UniRef90	UniRef90_UPI001570499E	H-type lectin domain-containing protein	NA
UHGV-0010289_11	eggNOG-mapper	1232446.BAIE02000011_gene1583	NA	NA
UHGV-0010289_11	Structural annotation	PF08931, PF20747	NA	NA
UHGV-0010289_12	PHROG	phrog_538	minor tail protein	tail
UHGV-0010289_12	UniRef90	UniRef90_A0A1M6B1Q8	Virus ReqiPepy6 Gp37-like protein	NA
UHGV-0010289_12	eggNOG-mapper	1232446.BAIE02000011_gene1584	NA	NA
UHGV-0010289_12	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0010289_12	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0010289_13	UniRef90	UniRef90_UPI00156E3DDD	phage tail protein	NA
UHGV-0010289_13	eggNOG-mapper	1232446.BAIE02000011_gene1585	NA	NA
UHGV-0010289_13	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0010289_14	PHROG	phrog_17020	NA	unknown function
UHGV-0010289_14	UniRef90	UniRef90_A0A0J8Z1A0	Tail protein	NA
UHGV-0010289_14	eggNOG-mapper	1122989.KB898607_gene43	nuclear chromosome segregation	NA
UHGV-0010289_14	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0010289_14	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0010289_15	eggNOG-mapper	457396.CSBG_01056	NA	NA
UHGV-0010289_16	eggNOG-mapper	457396.CSBG_01055	NA	NA
UHGV-0010289_17	PHROG	phrog_885	major tail protein	tail
UHGV-0010289_17	eggNOG-mapper	1414720.CBYM010000040_gene1652	NA	NA
UHGV-0010289_17	Structural annotation	PF09393, TIGR01603, COG3498	NA	NA
UHGV-0010289_18	PHROG	phrog_957	head protein	head and packaging
UHGV-0010289_18	eggNOG-mapper	1414720.CBYM010000040_gene1651	NA	NA
UHGV-0010289_18	Structural annotation	PF11367, COG4722	NA	NA
UHGV-0010289_19	UniRef90	UniRef90_A0A0J8Z1A5	Phage protein, HK97 gp10 family	NA
UHGV-0010289_19	eggNOG-mapper	1414720.CBYM010000040_gene1650	NA	NA
UHGV-0010289_19	Structural annotation	TIGR01725	NA	NA
UHGV-0010289_20	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0010289_20	UniRef90	UniRef90_A0A0J9BRH9	Phage head-tail adaptor	NA
UHGV-0010289_20	eggNOG-mapper	768704.Desmer_4460	head-tail adaptor	NA
UHGV-0010289_20	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0010289_20	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0010289_20	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0010289_21	PHROG	phrog_5223	neck protein	connector
UHGV-0010289_21	UniRef90	UniRef90_A0A5M8RL13	DNA-packaging protein	NA
UHGV-0010289_21	eggNOG-mapper	198094.BA_3782	NA	NA
UHGV-0010289_22	PHROG	phrog_10	major head protein	head and packaging
UHGV-0010289_22	UniRef90	UniRef90_A0A318KH54	HK97 family phage major capsid protein	NA
UHGV-0010289_22	eggNOG-mapper	1414720.CBYM010000040_gene1647	Phage capsid family	NA
UHGV-0010289_22	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0010289_22	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0010289_22	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0010289_22	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0010289_23	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0010289_23	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0010289_23	UniRef90	UniRef90_A0A0J8Z1U4	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0010289_23	eggNOG-mapper	396359.Q0SPK3_9CAUD	Clp protease	NA
UHGV-0010289_23	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0010289_23	Structural annotation	PF00574, MF_00444, NF011091, COG0740	NA	NA
UHGV-0010289_24	PHROG	phrog_12	portal protein	head and packaging
UHGV-0010289_24	UniRef90	UniRef90_A0A0J8Z114	Prophage LambdaBa04, portal protein	NA
UHGV-0010289_24	eggNOG-mapper	1414720.CBYM010000040_gene1645	Portal protein	NA
UHGV-0010289_24	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0010289_24	COG	COG0241	Histidinol phosphatase/D-glycero-mannoheptose bisphosphatephosphatase, HAD superfamily	NA
UHGV-0010289_24	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0010289_25	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0010289_25	UniRef90	UniRef90_A0A0J8Z1B0	Phage terminase	NA
UHGV-0010289_25	eggNOG-mapper	1243664.CAVL020000054_gene3026	Terminase	NA
UHGV-0010289_25	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0010289_25	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0010289_25	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0010289_25	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0010289_26	PHROG	phrog_1066	NA	unknown function
UHGV-0010289_26	eggNOG-mapper	1122143.AUEG01000005_gene1435	NA	NA
UHGV-0010289_26	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0010289_27	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0010289_27	PHROG	phrog_4581	terminase small subunit	head and packaging
UHGV-0010289_27	UniRef90	UniRef90_A0A0J8Z1U8	Prophage LambdaBa04, Gp54	NA
UHGV-0010289_27	eggNOG-mapper	1414720.CBYM010000040_gene1642	HNH nucleases	NA
UHGV-0010289_27	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0010289_27	Pfam	PF13671	AAA domain	AAA_33
UHGV-0010289_27	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0010289_27	Structural annotation	PF13671, MF_03171, NF005251, NF008448, COG4639	NA	NA
UHGV-0010289_28	PHROG	phrog_30609	NA	unknown function
UHGV-0010289_28	Structural annotation	PF21485	NA	NA
UHGV-0010289_29	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0010289_29	Pfam	PF07374	NA	DUF1492
UHGV-0010289_33	PHROG	phrog_22292	NA	unknown function
UHGV-0010289_34	PHROG	phrog_4019	NA	unknown function
UHGV-0010289_34	UniRef90	UniRef90_F9PY75	Conserved domain protein	NA
UHGV-0010289_35	KOfam	K03733	xerC; integrase/recombinase XerC	NA
UHGV-0010289_35	PHROG	phrog_1	integrase	integration and excision
UHGV-0010289_35	UniRef90	UniRef90_E2NU93	Site-specific recombinase, phage integrase family	NA
UHGV-0010289_35	eggNOG-mapper	411460.RUMTOR_01870	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0010289_35	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0010289_35	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0010289_35	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0010289_35	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0010289_36	PHROG	phrog_5696	NA	unknown function
UHGV-0010289_36	UniRef90	UniRef90_E2NU94	N6_Mtase domain-containing protein	NA
UHGV-0010289_36	eggNOG-mapper	1123504.JQKD01000088_gene782	N-6 DNA Methylase	NA
UHGV-0010289_36	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0010289_36	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0010289_36	Structural annotation	PF13679, MF_02126, TIGR00497, COG0286	NA	NA
UHGV-0010289_37	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0010289_37	UniRef90	UniRef90_E2NU95	HNHc domain-containing protein	NA
UHGV-0010289_37	eggNOG-mapper	1410650.JHWL01000037_gene604	NA	NA
UHGV-0010289_37	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0010289_37	Structural annotation	PF13392	NA	NA
UHGV-0010289_38	PHROG	phrog_6072	NA	unknown function
UHGV-0010289_39	PHROG	phrog_4074	NA	unknown function