UHGV-0010637

Genome information

Genome length 23,854 bps

CDS count 27

Completeness 55.60% (medium-quality)

geNomad score 0.9820

Prediction confidence Confident

Genome information
Genome ID	UHGV-0010637
vOTU ID	vOTU-040928
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_PheChl_Fiber-Hadza-Nepal_A_2_1112__NODE_3460_length_43693_cov_5.620139_1
BioSample	SAMEA4765572
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	55.60% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9820
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.6
Jumbo phage	No

Genome content
Genome length	23,854 bps
GC content	43.24%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	27
CDS density	93.66%
Average CDS length	830.89 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0010637_1	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0010637_1	UniRef90	UniRef90_A0A1Q9J5L4	Antitoxin HicB	NA
UHGV-0010637_1	eggNOG-mapper	97138.C820_00753	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-0010637_1	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0010637_1	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0010637_1	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0010637_2	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-0010637_2	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0010637_2	UniRef90	UniRef90_UPI001C00F4E3	type II toxin-antitoxin system HicA family toxin	NA
UHGV-0010637_2	eggNOG-mapper	537007.BLAHAN_05444	NA	NA
UHGV-0010637_2	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0010637_2	Structural annotation	PF07927	NA	NA
UHGV-0010637_3	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0010637_3	PHROG	phrog_435	endolysin	lysis
UHGV-0010637_3	UniRef90	UniRef90_A0A173UCF2	N-acetylmuramoyl-L-alanine amidase LytC	NA
UHGV-0010637_3	eggNOG-mapper	1232447.BAHW02000005_gene156	Cell wall hydrolase autolysin	NA
UHGV-0010637_3	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0010637_3	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0010637_3	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0010637_4	PHROG	phrog_443	holin	lysis
UHGV-0010637_4	UniRef90	UniRef90_UPI001C0212A6	holin	NA
UHGV-0010637_4	eggNOG-mapper	1235802.C823_05612	Putative lactococcus lactis phage r1t holin	NA
UHGV-0010637_4	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0010637_4	Structural annotation	PF16945	NA	NA
UHGV-0010637_5	PHROG	phrog_4105	NA	unknown function
UHGV-0010637_5	eggNOG-mapper	521003.COLINT_02361	NA	NA
UHGV-0010637_6	PHROG	phrog_17196	kinase	other
UHGV-0010637_6	eggNOG-mapper	397290.C810_05240	NA	NA
UHGV-0010637_7	PHROG	phrog_2566	NA	unknown function
UHGV-0010637_7	UniRef90	UniRef90_Q9AZX0	Orf59	NA
UHGV-0010637_7	eggNOG-mapper	272623.L69746	NA	NA
UHGV-0010637_8	PHROG	phrog_18190	NA	unknown function
UHGV-0010637_8	UniRef90	UniRef90_A0A173UFM3	Peptidase S74 domain-containing protein	NA
UHGV-0010637_8	eggNOG-mapper	1235790.C805_00089	NA	NA
UHGV-0010637_8	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0010637_8	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0010637_9	PHROG	phrog_1194	NA	unknown function
UHGV-0010637_9	eggNOG-mapper	1235790.C805_00088	NA	NA
UHGV-0010637_9	Pfam	PF20458	NA	DUF6711
UHGV-0010637_9	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0010637_10	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0010637_10	UniRef90	UniRef90_A0A1C6CG40	Phage-related protein	NA
UHGV-0010637_10	eggNOG-mapper	1304866.K413DRAFT_3046	NA	NA
UHGV-0010637_10	COG	COG5283	Phage-related tail protein	NA
UHGV-0010637_11	PHROG	phrog_706	NA	unknown function
UHGV-0010637_11	UniRef90	UniRef90_C7GBZ7	Bacteriophage Gp15 protein	NA
UHGV-0010637_11	eggNOG-mapper	1235790.C805_00084	Bacteriophage Gp15 protein	NA
UHGV-0010637_11	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0010637_11	Structural annotation	PF06854	NA	NA
UHGV-0010637_12	UniRef90	UniRef90_A0A3B9CD56	RNA polymerase subunit sigma	NA
UHGV-0010637_12	Structural annotation	PF10666	NA	NA
UHGV-0010637_13	PHROG	phrog_3099	NA	unknown function
UHGV-0010637_13	eggNOG-mapper	1235790.C805_00082	NA	NA
UHGV-0010637_13	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0010637_14	PHROG	phrog_3266	tail completion	connector
UHGV-0010637_14	eggNOG-mapper	1235790.C805_00081	NA	NA
UHGV-0010637_14	Structural annotation	PF12691	NA	NA
UHGV-0010637_15	PHROG	phrog_3366	NA	unknown function
UHGV-0010637_15	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-0010637_15	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0010637_17	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0010637_17	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-0010637_18	PHROG	phrog_247	major head protein	head and packaging
UHGV-0010637_18	UniRef90	UniRef90_A0A3R6GNQ1	Phage coat protein	NA
UHGV-0010637_18	eggNOG-mapper	536233.CLO_0886	NA	NA
UHGV-0010637_18	Pfam	PF20036	Major capsid protein 13-like	Gp13-like
UHGV-0010637_18	COG	COG1106	ATPase/GTPase, AAA15 family	NA
UHGV-0010637_18	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0010637_19	eggNOG-mapper	1539298.JO41_08210	Phage minor structural protein GP20	NA
UHGV-0010637_20	UniRef90	UniRef90_R6BU26	Peptidyl-dipeptidase Dcp	NA
UHGV-0010637_21	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0010637_21	UniRef90	UniRef90_A0A6L5YIK0	Phage capsid protein	NA
UHGV-0010637_21	eggNOG-mapper	1160721.RBI_II00541	NA	NA
UHGV-0010637_21	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0010637_21	COG	COG2369	NA	NA
UHGV-0010637_21	Structural annotation	PF06152	NA	NA
UHGV-0010637_22	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0010637_22	UniRef90	UniRef90_UPI000E4A8F9F	minor capsid protein	NA
UHGV-0010637_22	eggNOG-mapper	1449050.JNLE01000003_gene3886	NA	NA
UHGV-0010637_22	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0010637_22	Structural annotation	PF11114	NA	NA
UHGV-0010637_23	PHROG	phrog_533	portal protein	head and packaging
UHGV-0010637_23	UniRef90	UniRef90_A0A3B9CD47	Phage capsid protein	NA
UHGV-0010637_23	eggNOG-mapper	476272.RUMHYD_01758	phage minor capsid protein	NA
UHGV-0010637_23	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0010637_24	PHROG	phrog_1233	NA	unknown function
UHGV-0010637_24	UniRef90	UniRef90_UPI001C39EFB9	Dienelactone hydrolase family protein	NA
UHGV-0010637_24	eggNOG-mapper	357809.Cphy_2967	NA	NA
UHGV-0010637_25	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0010637_25	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0010637_25	UniRef90	UniRef90_A0A3R6H2I4	Terminase_3 domain-containing protein	NA
UHGV-0010637_25	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0010637_25	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0010637_25	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0010637_25	COG	COG1783	Phage terminase large subunit	NA
UHGV-0010637_25	Structural annotation	PF04466, PF17288, PF06056, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0010637_27	PHROG	phrog_33130	NA	unknown function
UHGV-0010637_27	UniRef90	UniRef90_A0A3B9CD52	S1-like domain-containing protein	NA
UHGV-0010637_27	Structural annotation	PF10922	NA	NA