UHGV-0010776

Genome information

Genome length 60,500 bps

CDS count 93

Completeness 100.00% (complete)

geNomad score 0.9696

Prediction confidence Confident

Genome information
Genome ID	UHGV-0010776
vOTU ID	vOTU-042592
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-A-D_D_19_1578__NODE_1193_length_60577_cov_6.669223
BioSample	SAMEA4765863
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	24
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9696
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.46
Jumbo phage	No

Genome content
Genome length	60,500 bps
GC content	66.99%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	93
CDS density	92.73%
Average CDS length	606.74 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0010776_2	PHROG	phrog_837	minor tail protein	tail
UHGV-0010776_2	UniRef90	UniRef90_A0A6G6XLR8	Minor tail protein	NA
UHGV-0010776_2	eggNOG-mapper	182851.I4AZD8_9CAUD	NA	NA
UHGV-0010776_3	PHROG	phrog_23968	minor tail protein	tail
UHGV-0010776_3	UniRef90	UniRef90_A0A6G6XLT7	Minor tail protein	NA
UHGV-0010776_3	eggNOG-mapper	182851.I4AZD9_9CAUD	NA	NA
UHGV-0010776_3	Pfam	PF00041	Fibronectin type III domain	fn3
UHGV-0010776_3	Pfam	PF02018	Carbohydrate binding domain	CBM_4_9
UHGV-0010776_4	PHROG	phrog_838	NA	unknown function
UHGV-0010776_4	UniRef90	UniRef90_A0A514DI32	Minor tail protein	NA
UHGV-0010776_4	eggNOG-mapper	1123321.KB905822_gene3893	NA	NA
UHGV-0010776_5	PHROG	phrog_13339	tail length tape measure protein	tail
UHGV-0010776_5	UniRef90	UniRef90_A0A6N0A843	Tape measure protein	NA
UHGV-0010776_5	eggNOG-mapper	1389489.O159_17020	Phage-related minor tail protein	NA
UHGV-0010776_5	COG	COG5283	Phage-related tail protein	NA
UHGV-0010776_8	PHROG	phrog_810	NA	unknown function
UHGV-0010776_8	UniRef90	UniRef90_A0A6G6XLR3	Minor capsid protein	NA
UHGV-0010776_8	eggNOG-mapper	1123321.KB905822_gene3889	NA	NA
UHGV-0010776_9	PHROG	phrog_783	head-tail adaptor	connector
UHGV-0010776_9	UniRef90	UniRef90_A0A6N0A5H9	Head-to-tail adaptor	NA
UHGV-0010776_9	eggNOG-mapper	653045.Strvi_0031	NA	NA
UHGV-0010776_9	Structural annotation	TIGR02215	NA	NA
UHGV-0010776_10	UniRef90	UniRef90_A0A3A3HAB0	Glycosyl hydrolase family protein	NA
UHGV-0010776_10	eggNOG-mapper	392499.Swit_4552	Glycosyl hydrolases family 16	NA
UHGV-0010776_10	Pfam	PF03935	Beta-glucan synthesis-associated protein SKN1/KRE6/Sbg1	SKN1_KRE6_Sbg1
UHGV-0010776_10	COG	COG2273	Beta-glucanase, GH16 family	NA
UHGV-0010776_11	UniRef90	UniRef90_UPI001CC00C2D	Ig domain-containing protein	NA
UHGV-0010776_11	eggNOG-mapper	1132441.KI519455_gene3634	Putative Ig domain	NA
UHGV-0010776_11	Pfam	PF05345	Putative Ig domain	He_PIG
UHGV-0010776_11	COG	COG3391	DNA-binding beta-propeller fold protein YncE	NA
UHGV-0010776_13	PHROG	phrog_35351	NA	unknown function
UHGV-0010776_14	PHROG	phrog_792	major tail protein	tail
UHGV-0010776_14	UniRef90	UniRef90_A0A7G8LE54	Major tail protein	NA
UHGV-0010776_14	eggNOG-mapper	1288079.AUKN01000040_gene1507	Pkd domain containing protein	NA
UHGV-0010776_14	COG	COG3291	NA	NA
UHGV-0010776_16	PHROG	phrog_779	NA	unknown function
UHGV-0010776_17	PHROG	phrog_777	major head protein	head and packaging
UHGV-0010776_17	UniRef90	UniRef90_A0A6N0A4R6	Major capsid protein	NA
UHGV-0010776_17	eggNOG-mapper	1123321.KB905834_gene403	NA	NA
UHGV-0010776_17	NCBIFam	NF033847.1	major capsid protein	NA
UHGV-0010776_17	Structural annotation	PF19774, MF_04113, NF033847, COG4834	NA	NA
UHGV-0010776_19	PHROG	phrog_859	portal protein	head and packaging
UHGV-0010776_19	UniRef90	UniRef90_A0A7G8LE49	Capsid maturation protease and MuF-like fusion protein	NA
UHGV-0010776_19	eggNOG-mapper	653045.Strvi_0038	Phage prohead protease, HK97 family	NA
UHGV-0010776_19	Pfam	PF13563	2'-5' RNA ligase superfamily	2_5_RNA_ligase2
UHGV-0010776_19	COG	COG3740	Phage head maturation protease	NA
UHGV-0010776_20	PHROG	phrog_776	portal protein	head and packaging
UHGV-0010776_20	UniRef90	UniRef90_A0A6N0A6F6	Portal protein	NA
UHGV-0010776_20	eggNOG-mapper	1123321.KB905821_gene4275	Participates in initiation and elongation during chromosome replication	NA
UHGV-0010776_20	COG	COG1372	Intein/homing endonuclease	NA
UHGV-0010776_21	UniRef90	UniRef90_A0A7G9A050	Membrane protein	NA
UHGV-0010776_22	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0010776_22	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0010776_22	UniRef90	UniRef90_A0A3N6A9H9	ATP-binding protein	NA
UHGV-0010776_22	eggNOG-mapper	1094980.Mpsy_0568	chromosome segregation	NA
UHGV-0010776_22	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0010776_22	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0010776_22	COG	COG5410	NA	NA
UHGV-0010776_22	Structural annotation	PF04466, PF17289, MF_04145, TIGR01547, COG5323	NA	NA
UHGV-0010776_24	UniRef90	UniRef90_A0A2U8ULQ5	Ribbon-helix-helix DNA binding domain protein	NA
UHGV-0010776_33	UniRef90	UniRef90_UPI00166C4A80	helix-turn-helix domain-containing protein	NA
UHGV-0010776_33	eggNOG-mapper	1101188.KI912155_gene1751	DNA excision	NA
UHGV-0010776_33	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0010776_33	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-0010776_33	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0010776_44	PHROG	phrog_1221	NA	unknown function
UHGV-0010776_44	UniRef90	UniRef90_A0A2P8E3S7	Phage/plasmid-like protein (TIGR03299 family)	NA
UHGV-0010776_44	eggNOG-mapper	330084.JNYZ01000022_gene3782	NA	NA
UHGV-0010776_44	Pfam	PF06067	NA	DUF932
UHGV-0010776_44	NCBIFam	TIGR03299.1	phage/plasmid-like protein TIGR03299	NA
UHGV-0010776_49	PHROG	phrog_22197	NA	unknown function
UHGV-0010776_50	PHROG	phrog_826	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0010776_50	UniRef90	UniRef90_U5PTU3	HNH endonuclease	NA
UHGV-0010776_50	eggNOG-mapper	1406793.U5PTU3_9CAUD	HNH endonuclease	NA
UHGV-0010776_50	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0010776_51	PHROG	phrog_4160	NA	unknown function
UHGV-0010776_52	PHROG	phrog_3842	NA	unknown function
UHGV-0010776_52	eggNOG-mapper	1357732.A0A059PY86_9CAUD	NA	NA
UHGV-0010776_65	Pfam	PF03869	Arc-like DNA binding domain	Arc
UHGV-0010776_67	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0010776_67	UniRef90	UniRef90_UPI001E5DF5C2	helix-turn-helix domain-containing protein	NA
UHGV-0010776_67	eggNOG-mapper	1397699.JNIS01000001_gene2919	Replication initiation and membrane attachment	NA
UHGV-0010776_67	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0010776_67	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0010776_67	Structural annotation	PF13730, MF_01819, TIGR01610, COG5529	NA	NA
UHGV-0010776_68	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0010776_68	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0010776_68	UniRef90	UniRef90_A0A4R8WZY1	DNA helicase	NA
UHGV-0010776_68	eggNOG-mapper	1414742.V5R9D2_9CAUD	DNA helicase activity	NA
UHGV-0010776_68	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0010776_68	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0010776_73	PHROG	phrog_1872	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0010776_73	UniRef90	UniRef90_A0A191WF32	HNHc domain-containing protein	NA
UHGV-0010776_73	eggNOG-mapper	179408.Osc7112_5745	HNH endonuclease	NA
UHGV-0010776_73	COG	COG2197	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	NA
UHGV-0010776_74	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0010776_74	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0010776_74	UniRef90	UniRef90_A0A649VSU6	SsDNA binding protein	NA
UHGV-0010776_74	eggNOG-mapper	1449058.JQKT01000008_gene2709	Single-strand binding protein family	NA
UHGV-0010776_74	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0010776_74	NCBIFam	NF005851.0	single-stranded DNA-binding protein	NA
UHGV-0010776_74	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0010776_74	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0010776_74	Structural annotation	PF00436, MF_00984, NF005851, COG2965	NA	NA
UHGV-0010776_75	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0010776_75	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0010776_75	UniRef90	UniRef90_A0A7H0JWP1	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0010776_75	eggNOG-mapper	1122182.KB903813_gene2836	Endodeoxyribonuclease RusA	NA
UHGV-0010776_75	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0010776_75	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0010776_75	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0010776_77	PHROG	phrog_826	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0010776_78	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0010776_78	UniRef90	UniRef90_A0A2U8UHW1	Exonuclease	NA
UHGV-0010776_78	eggNOG-mapper	1121924.ATWH01000012_gene1168	YqaJ-like viral recombinase domain	NA
UHGV-0010776_78	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0010776_79	PHROG	phrog_419	NA	unknown function
UHGV-0010776_79	eggNOG-mapper	1036616.G1DUU3_9CAUD	NA	NA
UHGV-0010776_80	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0010776_80	UniRef90	UniRef90_A0A2U8UI20	SsDNA binding protein	NA
UHGV-0010776_80	eggNOG-mapper	1389489.O159_16730	NA	NA
UHGV-0010776_80	Pfam	PF03837	RecT family	RecT
UHGV-0010776_89	UniRef90	UniRef90_A0A2R4A1N0	Membrane protein	NA
UHGV-0010776_90	PHROG	phrog_3798	NA	unknown function
UHGV-0010776_90	UniRef90	UniRef90_A0A7G8LFE9	Membrane protein	NA
UHGV-0010776_91	UniRef90	UniRef90_A0A7G8LFE7	Membrane protein	NA
UHGV-0010776_92	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0010776_92	PHROG	phrog_14988	peptidase	other
UHGV-0010776_92	UniRef90	UniRef90_A0A6G6XM24	Lysin A	NA
UHGV-0010776_92	eggNOG-mapper	1087448.Eab7_0515	Peptidase, M23	NA
UHGV-0010776_92	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0010776_92	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0010776_92	COG	COG4942	Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB	NA
UHGV-0010776_93	UniRef90	UniRef90_A0A6M9Z575	Minor tail protein	NA
UHGV-0010776_93	eggNOG-mapper	1416759.AYMR01000009_gene3061	NA	NA