UHGV-0010875

Genome information

Genome length 39,932 bps

CDS count 54

Completeness 99.90% (high-quality)

geNomad score 0.9706

Prediction confidence Confident

Genome information
Genome ID	UHGV-0010875
vOTU ID	vOTU-008768
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Nepal_MoBio_Fiber-Hadza-Nepal_B_15_RAU0016YZ__NODE_675_length_85641_cov_125.196333_1
BioSample	SAMEA4969169
Country	Nepal
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9706
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	19.47
Jumbo phage	No

Genome content
Genome length	39,932 bps
GC content	39.13%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	92.38%
Average CDS length	688.39 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0010875_1	KOfam	K07497	K07497; putative transposase	NA
UHGV-0010875_1	PHROG	phrog_8463	transposase	integration and excision
UHGV-0010875_1	UniRef90	UniRef90_A0A357IP96	IS481 family transposase	NA
UHGV-0010875_1	eggNOG-mapper	1123307.KB904367_gene1244	Transposase and inactivated derivatives	NA
UHGV-0010875_1	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0010875_1	Pfam	PF00665	Integrase core domain	rve
UHGV-0010875_1	Pfam	PF13683	Integrase core domain	rve_3
UHGV-0010875_1	COG	COG2801	Transposase InsO and inactivated derivatives	NA
UHGV-0010875_1	Structural annotation	PF00665, PF13518, NF033577, COG2801	NA	NA
UHGV-0010875_2	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0010875_2	PHROG	phrog_95	integrase	integration and excision
UHGV-0010875_2	UniRef90	UniRef90_A0A285BFP7	Site-specific DNA recombinase	NA
UHGV-0010875_2	eggNOG-mapper	393480.FNP_1879	Recombinase zinc beta ribbon domain	NA
UHGV-0010875_2	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0010875_2	Pfam	PF07508	Recombinase	Recombinase
UHGV-0010875_2	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0010875_2	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0010875_2	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0010875_4	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0010875_4	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0010875_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0010875_12	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0010875_12	UniRef90	UniRef90_UPI001E3A94F9	NA	NA
UHGV-0010875_12	eggNOG-mapper	1408324.JNJK01000006_gene1358	NA	NA
UHGV-0010875_12	Pfam	PF10926	NA	DUF2800
UHGV-0010875_12	COG	COG2887	RecB family exonuclease	NA
UHGV-0010875_13	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0010875_13	UniRef90	UniRef90_UPI00054DF729	NA	NA
UHGV-0010875_13	eggNOG-mapper	1134413.ANNK01000054_gene2216	NA	NA
UHGV-0010875_13	Pfam	PF10926	NA	DUF2800
UHGV-0010875_13	COG	COG2887	RecB family exonuclease	NA
UHGV-0010875_14	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0010875_14	UniRef90	UniRef90_UPI001E4874A9	NA	NA
UHGV-0010875_14	eggNOG-mapper	445335.CBN_3006	NA	NA
UHGV-0010875_14	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-0010875_14	Structural annotation	PF10991, MF_04153	NA	NA
UHGV-0010875_15	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-0010875_15	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0010875_15	UniRef90	UniRef90_A0A417KEE8	DNA-directed DNA polymerase	NA
UHGV-0010875_15	eggNOG-mapper	1408422.JHYF01000003_gene950	DNA polymerase	NA
UHGV-0010875_15	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-0010875_15	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-0010875_15	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-0010875_17	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0010875_17	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0010875_19	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0010875_19	UniRef90	UniRef90_A0A1V1I1D5	Virulence-associated protein E	NA
UHGV-0010875_19	eggNOG-mapper	552396.HMPREF0863_00286	NA	NA
UHGV-0010875_19	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-0010875_19	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-0010875_19	Structural annotation	PF05272, MF_04000, NF005477, NF040562, COG5545	NA	NA
UHGV-0010875_20	Structural annotation	PF18350, MF_01354, TIGR00739, COG2139	NA	NA
UHGV-0010875_21	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0010875_21	UniRef90	UniRef90_R0AHX3	VRR-NUC domain-containing protein	NA
UHGV-0010875_21	eggNOG-mapper	1095750.HMPREF9970_1023	VRR-NUC domain protein	NA
UHGV-0010875_22	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0010875_22	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0010875_22	UniRef90	UniRef90_A0A8C5JGQ8	Helicase ATP-binding domain-containing protein	NA
UHGV-0010875_22	eggNOG-mapper	1286171.EAL2_c19880	SNF2 family N-terminal domain	NA
UHGV-0010875_22	PADLOC	ZorD1_00007	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0010875_22	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0010875_22	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0010875_22	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0010875_22	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-0010875_23	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0010875_23	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0010875_23	UniRef90	UniRef90_UPI0018C50C6C	HNH endonuclease	NA
UHGV-0010875_23	eggNOG-mapper	411465.PEPMIC_00730	HNH nucleases	NA
UHGV-0010875_23	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0010875_23	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0010875_24	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0010875_24	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0010875_24	UniRef90	UniRef90_UPI000AB7E165	site-specific DNA-methyltransferase	NA
UHGV-0010875_24	eggNOG-mapper	1118057.CAGX01000020_gene1624	ParB-like nuclease domain	NA
UHGV-0010875_24	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0010875_24	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0010875_24	COG	COG0863	DNA modification methylase	NA
UHGV-0010875_25	KOfam	K00789	metK, MAT; S-adenosylmethionine synthetase [EC:2.5.1.6]	NA
UHGV-0010875_25	PHROG	phrog_1569	NA	unknown function
UHGV-0010875_25	UniRef90	UniRef90_A0A8C5JBU3	Methionine adenosyltransferase	NA
UHGV-0010875_25	eggNOG-mapper	796940.HMPREF9628_00289	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme	NA
UHGV-0010875_25	Pfam	PF00438	S-adenosylmethionine synthetase, N-terminal domain	S-AdoMet_synt_N
UHGV-0010875_25	Pfam	PF02772	S-adenosylmethionine synthetase, central domain	S-AdoMet_synt_M
UHGV-0010875_25	Pfam	PF02773	S-adenosylmethionine synthetase, C-terminal domain	S-AdoMet_synt_C
UHGV-0010875_25	COG	COG0192	S-adenosylmethionine synthetase	NA
UHGV-0010875_25	Structural annotation	PF02773, PF02772, PF00438, MF_00086, TIGR01034, COG0192	NA	NA
UHGV-0010875_26	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0010875_26	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0010875_26	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0010875_26	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0010875_27	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0010875_27	UniRef90	UniRef90_UPI001C8CA5DE	terminase large subunit	NA
UHGV-0010875_27	eggNOG-mapper	1089548.KI783301_gene3220	Terminase	NA
UHGV-0010875_27	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0010875_27	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0010875_27	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0010875_27	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0010875_28	PHROG	phrog_12	portal protein	head and packaging
UHGV-0010875_28	UniRef90	UniRef90_A0A8B5JWT1	Phage portal protein	NA
UHGV-0010875_28	eggNOG-mapper	1229783.C273_11311	Phage portal protein	NA
UHGV-0010875_28	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0010875_28	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0010875_28	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0010875_29	KOfam	K06904	NA	NA
UHGV-0010875_29	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0010875_29	UniRef90	UniRef90_UPI001C8D27A1	HK97 family phage prohead protease	NA
UHGV-0010875_29	eggNOG-mapper	324057.Pjdr2_1542	Caudovirus prohead serine protease	NA
UHGV-0010875_29	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0010875_29	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0010875_29	COG	COG3740	Phage head maturation protease	NA
UHGV-0010875_29	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0010875_30	PHROG	phrog_10	major head protein	head and packaging
UHGV-0010875_30	UniRef90	UniRef90_UPI001899FA80	phage major capsid protein	NA
UHGV-0010875_30	eggNOG-mapper	742740.HMPREF9474_04304	Phage capsid family	NA
UHGV-0010875_30	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0010875_30	Structural annotation	PF05065, PF09032, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0010875_32	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0010875_32	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0010875_37	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0010875_38	PHROG	phrog_9483	tail length tape measure protein	tail
UHGV-0010875_38	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0010875_38	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-0010875_39	Structural annotation	PF16774, PF21766, TIGR02241, COG4722	NA	NA
UHGV-0010875_40	Structural annotation	PF14594, TIGR03361, COG3500	NA	NA
UHGV-0010875_46	PHROG	phrog_5181	NA	unknown function
UHGV-0010875_46	eggNOG-mapper	998088.B565_2478	tail collar domain protein	NA
UHGV-0010875_46	COG	COG4409	Neuraminidase (sialidase) NanH, contains C-terminal autotransporter domain	NA
UHGV-0010875_54	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-0010875_54	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0010875_54	UniRef90	UniRef90_R5ZD18	Helicase ATP-binding domain-containing protein	NA
UHGV-0010875_54	eggNOG-mapper	1278311.AUAL01000001_gene45	DEAD-like helicases superfamily	NA
UHGV-0010875_54	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0010875_54	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0010875_54	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0010875_54	Structural annotation	PF04851, MF_00350, TIGR04095, COG1061	NA	NA