UHGV-0012210

Genome information

Genome length 31,185 bps

CDS count 35

Completeness 73.51% (medium-quality)

geNomad score 0.9782

Prediction confidence Confident

Genome information
Genome ID	UHGV-0012210
vOTU ID	vOTU-029168
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_PheChl_Fiber-Hadza-Nepal_C_18_2379__NODE_1806_length_34275_cov_8.113194_1
BioSample	NA
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	73.51% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9782
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	44.33
Jumbo phage	No

Genome content
Genome length	31,185 bps
GC content	42.80%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	35
CDS density	96.02%
Average CDS length	857.66 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0012210_3	PHROG	phrog_6568	NA	unknown function
UHGV-0012210_3	eggNOG-mapper	1203606.HMPREF1526_00241	NA	NA
UHGV-0012210_4	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0012210_4	UniRef90	UniRef90_A0A1C5VKJ4	RNA polymerase sigma factor, sigma-70 family	NA
UHGV-0012210_4	eggNOG-mapper	1235792.C808_03069	sigma factor activity	NA
UHGV-0012210_4	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0012210_4	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0012210_4	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-0012210_6	KOfam	K12805	NLRC4, CARD12; NLR family CARD domain-containing protein 4	NA
UHGV-0012210_6	PHROG	phrog_18297	NA	unknown function
UHGV-0012210_6	UniRef90	UniRef90_UPI000D71D509	NACHT domain-containing protein	NA
UHGV-0012210_6	eggNOG-mapper	764299.STRIC_0832	Nacht domain	NA
UHGV-0012210_6	Pfam	PF05729	NACHT domain	NACHT
UHGV-0012210_6	COG	COG5635	Predicted NTPase, NACHT family domain	NA
UHGV-0012210_6	Structural annotation	PF20702, MF_00553, NF001624, COG5635	NA	NA
UHGV-0012210_7	PHROG	phrog_1889	terminase small subunit	head and packaging
UHGV-0012210_7	UniRef90	UniRef90_A0A564VY60	ATPase subunit of terminase (GpP-like)	NA
UHGV-0012210_7	eggNOG-mapper	33035.JPJF01000107_gene435	NA	NA
UHGV-0012210_7	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-0012210_7	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-0012210_7	COG	COG5484	NA	NA
UHGV-0012210_7	Structural annotation	PF06056, NF040601, COG5484	NA	NA
UHGV-0012210_8	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0012210_8	PHROG	phrog_10250	NA	unknown function
UHGV-0012210_8	UniRef90	UniRef90_A0A1G5F2L0	Phage terminase, large subunit, PBSX family	NA
UHGV-0012210_8	eggNOG-mapper	903814.ELI_3215	Phage terminase large subunit	NA
UHGV-0012210_8	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0012210_8	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0012210_8	COG	COG1783	Phage terminase large subunit	NA
UHGV-0012210_8	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0012210_11	PHROG	phrog_15471	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0012210_11	UniRef90	UniRef90_A0A1G5F2B5	HNH endonuclease	NA
UHGV-0012210_11	eggNOG-mapper	1141106.CAIB01000133_gene1117	HNH endonuclease	NA
UHGV-0012210_11	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0012210_11	Structural annotation	PF13392, PF10013, COG4068	NA	NA
UHGV-0012210_12	PHROG	phrog_64	portal protein	head and packaging
UHGV-0012210_12	UniRef90	UniRef90_A0A1G5F2B6	Phage portal protein, SPP1 family	NA
UHGV-0012210_12	eggNOG-mapper	742733.HMPREF9469_01826	Phage portal protein, SPP1 family	NA
UHGV-0012210_12	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0012210_12	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0012210_12	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0012210_13	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0012210_13	UniRef90	UniRef90_UPI001D0298CA	minor capsid protein	NA
UHGV-0012210_13	eggNOG-mapper	742733.HMPREF9469_01825	Phage head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0012210_13	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0012210_13	Pfam	PF21814	NA	DUF6883
UHGV-0012210_13	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0012210_13	COG	COG2369	NA	NA
UHGV-0012210_13	Structural annotation	PF21814, PF04233, TIGR01641, COG2369	NA	NA
UHGV-0012210_14	PHROG	phrog_34731	NA	unknown function
UHGV-0012210_14	eggNOG-mapper	1136177.KCA1_1759	NA	NA
UHGV-0012210_15	Structural annotation	PF01281	NA	NA
UHGV-0012210_16	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0012210_16	UniRef90	UniRef90_A0A415FLT0	NA	NA
UHGV-0012210_16	eggNOG-mapper	742733.HMPREF9469_01824	NA	NA
UHGV-0012210_16	Pfam	PF14265	NA	DUF4355
UHGV-0012210_16	Structural annotation	PF14265	NA	NA
UHGV-0012210_17	PHROG	phrog_422	major head protein	head and packaging
UHGV-0012210_17	UniRef90	UniRef90_A0A2H4JCM6	Putative capsid protein	NA
UHGV-0012210_17	eggNOG-mapper	742733.HMPREF9469_01823	NA	NA
UHGV-0012210_17	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0012210_18	PHROG	phrog_2724	NA	unknown function
UHGV-0012210_18	UniRef90	UniRef90_A0A1C5VLL2	Rho termination factor, N-terminal domain	NA
UHGV-0012210_18	Pfam	PF07498	Rho termination factor, N-terminal domain	Rho_N
UHGV-0012210_18	COG	COG0261	Ribosomal protein L21	NA
UHGV-0012210_18	Structural annotation	PF07498	NA	NA
UHGV-0012210_19	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0012210_19	UniRef90	UniRef90_A0A1G5F1K3	Phage gp6-like head-tail connector protein	NA
UHGV-0012210_19	eggNOG-mapper	742733.HMPREF9469_01821	Phage gp6-like head-tail connector protein	NA
UHGV-0012210_19	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0012210_19	Structural annotation	PF05135	NA	NA
UHGV-0012210_20	PHROG	phrog_2168	NA	unknown function
UHGV-0012210_20	eggNOG-mapper	742733.HMPREF9469_01820	NA	NA
UHGV-0012210_20	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0012210_21	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0012210_21	UniRef90	UniRef90_A0A415FLN0	HK97 gp10 family phage protein	NA
UHGV-0012210_21	eggNOG-mapper	742733.HMPREF9469_01819	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0012210_21	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0012210_21	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0012210_21	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0012210_22	eggNOG-mapper	1235800.C819_00480	NA	NA
UHGV-0012210_22	Structural annotation	PF05657	NA	NA
UHGV-0012210_23	PHROG	phrog_158	major tail protein	tail
UHGV-0012210_23	UniRef90	UniRef90_A0A415FLM9	Phage tail protein	NA
UHGV-0012210_23	eggNOG-mapper	742733.HMPREF9469_01817	Phage tail tube protein, TTP	NA
UHGV-0012210_23	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0012210_24	PHROG	phrog_183	tail chaperone protein	tail
UHGV-0012210_24	UniRef90	UniRef90_UPI001EE8B5C4	NA	NA
UHGV-0012210_24	eggNOG-mapper	1235800.C819_00478	NA	NA
UHGV-0012210_24	Pfam	PF19591	NA	DUF6096
UHGV-0012210_24	Structural annotation	PF19591	NA	NA
UHGV-0012210_25	PHROG	phrog_2066	NA	unknown function
UHGV-0012210_25	eggNOG-mapper	1123304.AQYA01000037_gene232	NA	NA
UHGV-0012210_26	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0012210_26	UniRef90	UniRef90_A0A448W7L1	Phage-related protein	NA
UHGV-0012210_26	eggNOG-mapper	1232453.BAIF02000058_gene1637	phage tail tape measure protein	NA
UHGV-0012210_26	COG	COG5412	Phage-related protein	NA
UHGV-0012210_27	PHROG	phrog_1194	NA	unknown function
UHGV-0012210_27	eggNOG-mapper	1232453.BAIF02000058_gene1638	NA	NA
UHGV-0012210_27	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0012210_28	PHROG	phrog_2566	NA	unknown function
UHGV-0012210_28	UniRef90	UniRef90_A8U7X4	Lj965 prophage protein	NA
UHGV-0012210_28	eggNOG-mapper	1294142.CINTURNW_1040	NA	NA
UHGV-0012210_29	PHROG	phrog_1401	NA	unknown function
UHGV-0012210_29	UniRef90	UniRef90_A0A7C6P910	NA	NA
UHGV-0012210_29	eggNOG-mapper	1232453.BAIF02000058_gene1640	NA	NA
UHGV-0012210_29	Structural annotation	PF07761	NA	NA
UHGV-0012210_30	PHROG	phrog_6616	tail protein	tail
UHGV-0012210_30	eggNOG-mapper	411459.RUMOBE_00923	NA	NA
UHGV-0012210_30	COG	COG4926	Phage-related protein	NA
UHGV-0012210_31	UniRef90	UniRef90_A0A564VXL8	Bacterial Ig-like domain (Group 2)	NA
UHGV-0012210_31	COG	COG5492	NA	NA
UHGV-0012210_32	PHROG	phrog_7841	NA	unknown function
UHGV-0012210_32	UniRef90	UniRef90_A0A415FLM5	Peptidase S74 domain-containing protein	NA
UHGV-0012210_32	eggNOG-mapper	1121864.OMO_01313	NA	NA
UHGV-0012210_32	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0012210_32	COG	COG4926	Phage-related protein	NA
UHGV-0012210_33	PHROG	phrog_1863	NA	unknown function
UHGV-0012210_33	eggNOG-mapper	1226322.HMPREF1545_04027	NA	NA
UHGV-0012210_34	PHROG	phrog_443	holin	lysis
UHGV-0012210_34	UniRef90	UniRef90_UPI000C75746C	holin	NA
UHGV-0012210_34	eggNOG-mapper	626523.GCWU000342_01012	Putative lactococcus lactis phage r1t holin	NA
UHGV-0012210_34	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0012210_34	Structural annotation	PF16945	NA	NA
UHGV-0012210_35	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0012210_35	PHROG	phrog_3088	amidase	lysis
UHGV-0012210_35	UniRef90	UniRef90_A0A564VYB8	N-acetylmuramoyl-L-alanine amidase CwlH	NA
UHGV-0012210_35	eggNOG-mapper	411459.RUMOBE_00909	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-0012210_35	Pfam	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
UHGV-0012210_35	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0012210_35	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0012210_35	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0012210_35	Structural annotation	PF01832, NF008758, NF009354, COG5632, COG4193	NA	NA