UHGV-0012316

Genome information

vOTU vOTU-061972

Genome length 39,455 bps

CDS count 59

Completeness 99.90% (high-quality)

geNomad score 0.9720

Prediction confidence Confident

Genome information
Genome ID	UHGV-0012316
vOTU ID	vOTU-061972
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-A-D_E_19_1056__NODE_1299_length_39455_cov_6.447915
BioSample	NA
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9720
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	13.58
Jumbo phage	No

Genome content
Genome length	39,455 bps
GC content	27.97%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	59
CDS density	93.16%
Average CDS length	626.44 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0012316_1	KOfam	K14059	int; integrase	NA
UHGV-0012316_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0012316_1	UniRef90	UniRef90_R7NIV8	Site-specific recombinase phage integrase family	NA
UHGV-0012316_1	eggNOG-mapper	411465.PEPMIC_00705	Phage integrase family	NA
UHGV-0012316_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0012316_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0012316_1	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0012316_2	eggNOG-mapper	1567014.A0A0A7RTU8_9VIRU	protein disulfide oxidoreductase activity	NA
UHGV-0012316_2	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0012316_4	PHROG	phrog_6058	NA	unknown function
UHGV-0012316_4	UniRef90	UniRef90_A0A0U9H7T0	Modification methylase SinI	NA
UHGV-0012316_4	eggNOG-mapper	558169.AGAV01000001_gene3325	NA	NA
UHGV-0012316_4	Structural annotation	PF12728, NF033787	NA	NA
UHGV-0012316_6	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0012316_6	UniRef90	UniRef90_A0A6C0LPL1	PDDEXK_1 domain-containing protein	NA
UHGV-0012316_6	eggNOG-mapper	1449050.JNLE01000005_gene3946	AAA domain	NA
UHGV-0012316_6	Pfam	PF13479	AAA domain	AAA_24
UHGV-0012316_6	Structural annotation	PF13479, PF12705, MF_03030, MF_00268, TIGR01618, TIGR00372, COG0468, COG4343	NA	NA
UHGV-0012316_8	PHROG	phrog_18107	NA	unknown function
UHGV-0012316_8	eggNOG-mapper	1449050.JNLE01000003_gene3912	NA	NA
UHGV-0012316_8	Structural annotation	PF05037	NA	NA
UHGV-0012316_9	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0012316_9	UniRef90	UniRef90_UPI0006936C9D	NA	NA
UHGV-0012316_9	eggNOG-mapper	568816.Acin_1851	NA	NA
UHGV-0012316_9	Pfam	PF06048	NA	DUF927
UHGV-0012316_9	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0012316_9	COG	COG5519	NA	NA
UHGV-0012316_9	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0012316_11	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0012316_11	UniRef90	UniRef90_A0A7X4ZBJ6	ERCC4 domain-containing protein	NA
UHGV-0012316_11	eggNOG-mapper	397290.C810_05169	ERCC4 domain	NA
UHGV-0012316_11	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0012316_11	Structural annotation	PF03834, NF040956, COG1948	NA	NA
UHGV-0012316_15	PHROG	phrog_7839	NA	unknown function
UHGV-0012316_15	eggNOG-mapper	202954.BBNK01000034_gene3794	NA	NA
UHGV-0012316_21	Structural annotation	PF09871, TIGR00739	NA	NA
UHGV-0012316_22	Structural annotation	PF13269	NA	NA
UHGV-0012316_23	PHROG	phrog_98	NA	unknown function
UHGV-0012316_23	UniRef90	UniRef90_A0A845LIT4	YopX domain-containing protein	NA
UHGV-0012316_23	eggNOG-mapper	1220589.CD32_01175	YopX protein	NA
UHGV-0012316_23	Pfam	PF09643	YopX protein	YopX
UHGV-0012316_23	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0012316_23	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0012316_26	PHROG	phrog_2715	NA	unknown function
UHGV-0012316_26	eggNOG-mapper	642492.Clole_0950	NA	NA
UHGV-0012316_26	Structural annotation	PF18406	NA	NA
UHGV-0012316_31	Structural annotation	PF19157, NF002506	NA	NA
UHGV-0012316_32	Structural annotation	PF10654	NA	NA
UHGV-0012316_33	Structural annotation	PF16535, PF04545	NA	NA
UHGV-0012316_34	PHROG	phrog_2412	NA	unknown function
UHGV-0012316_34	UniRef90	UniRef90_UPI001E414EFE	KGG domain-containing protein	NA
UHGV-0012316_34	eggNOG-mapper	563192.HMPREF0179_00168	NA	NA
UHGV-0012316_35	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0012316_35	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0012316_35	UniRef90	UniRef90_UPI00082C9116	PBSX family phage terminase large subunit	NA
UHGV-0012316_35	eggNOG-mapper	445971.ANASTE_00711	Phage terminase, large subunit, PBSX family	NA
UHGV-0012316_35	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0012316_35	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0012316_35	COG	COG1783	Phage terminase large subunit	NA
UHGV-0012316_35	Structural annotation	PF04466, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0012316_38	PHROG	phrog_156	portal protein	head and packaging
UHGV-0012316_38	eggNOG-mapper	445971.ANASTE_00716	NA	NA
UHGV-0012316_38	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0012316_40	PHROG	phrog_267	major head protein	head and packaging
UHGV-0012316_40	eggNOG-mapper	78344.BIGA_0457	NA	NA
UHGV-0012316_40	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0012316_42	PHROG	phrog_13046	NA	unknown function
UHGV-0012316_42	Structural annotation	PF20387	NA	NA
UHGV-0012316_43	eggNOG-mapper	445971.ANASTE_00721	NA	NA
UHGV-0012316_43	Structural annotation	PF11134, MF_01282, TIGR03300, COG5276	NA	NA
UHGV-0012316_45	eggNOG-mapper	755731.Clo1100_2421	NA	NA
UHGV-0012316_45	Pfam	PF18798	Large polyvalent protein-associated domain 3	LPD3
UHGV-0012316_46	KOfam	K07296	ADIPOQ, ACDC; adiponectin	NA
UHGV-0012316_46	PHROG	phrog_21973	tail protein	tail
UHGV-0012316_46	eggNOG-mapper	1391188.A0A068EMP3_9CAUD	NA	NA
UHGV-0012316_46	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0012316_47	PHROG	phrog_372	tail protein	tail
UHGV-0012316_47	UniRef90	UniRef90_A0A415H839	Pilus assembly protein	NA
UHGV-0012316_47	eggNOG-mapper	552396.HMPREF0863_01449	NA	NA
UHGV-0012316_47	Pfam	PF05895	NA	DUF859
UHGV-0012316_47	Structural annotation	PF05895, MF_04116, NF010681, COG3291, COG2967	NA	NA
UHGV-0012316_49	PHROG	phrog_24267	NA	unknown function
UHGV-0012316_49	UniRef90	UniRef90_R5LPM8	Putative truncated prophage LambdaSa1 minor structural protein	NA
UHGV-0012316_49	eggNOG-mapper	764299.STRIC_1424	tail collar domain protein	NA
UHGV-0012316_49	COG	COG4675	Phage tail collar domain	NA
UHGV-0012316_49	Structural annotation	COG4675	NA	NA
UHGV-0012316_52	PHROG	phrog_937	hemolysin	other
UHGV-0012316_54	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0012316_54	PHROG	phrog_7698	endolysin	lysis
UHGV-0012316_54	UniRef90	UniRef90_R7M5C6	Peptidase M23	NA
UHGV-0012316_54	eggNOG-mapper	545695.TREAZ_1882	peptidase	NA
UHGV-0012316_54	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0012316_54	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0012316_54	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0012316_54	Structural annotation	PF01551, MF_00664, NF040883, COG0739	NA	NA
UHGV-0012316_57	PHROG	phrog_7566	NA	unknown function
UHGV-0012316_58	KOfam	K03073	secE; preprotein translocase subunit SecE	NA
UHGV-0012316_58	UniRef90	UniRef90_R7HJN9	Protein translocase subunit SecE	NA
UHGV-0012316_58	Pfam	PF00584	SecE/Sec61-gamma subunits of protein translocation complex	SecE
UHGV-0012316_58	NCBIFam	TIGR00964.1	preprotein translocase subunit SecE	NA
UHGV-0012316_58	COG	COG0690	Preprotein translocase subunit SecE	NA
UHGV-0012316_58	HAMAP	MF_00422	Protein translocase subunit SecE [secE]	NA
UHGV-0012316_59	KOfam	K02601	nusG; transcription termination/antitermination protein NusG	NA
UHGV-0012316_59	UniRef90	UniRef90_A0A0N0Z3F5	NGN domain-containing protein	NA
UHGV-0012316_59	eggNOG-mapper	626369.HMPREF0446_01697	Participates in transcription elongation, termination and antitermination	NA
UHGV-0012316_59	Pfam	PF02357	Transcription termination factor nusG	NusG
UHGV-0012316_59	COG	COG0250	Transcription termination/antitermination protein NusG	NA