UHGV-0012504

Genome information

Genome length 42,102 bps

CDS count 76

Completeness 98.39% (high-quality)

geNomad score 0.9761

Prediction confidence Confident

Genome information
Genome ID	UHGV-0012504
vOTU ID	vOTU-009688
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_PheChl_Fiber-Hadza-Nepal_E_12_1556__NODE_700_length_81334_cov_8.497373_1
BioSample	SAMEA4765846
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.39% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9761
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.36
Jumbo phage	No

Genome content
Genome length	42,102 bps
GC content	33.32%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	76
CDS density	89.12%
Average CDS length	496.18 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0012504_2	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0012504_2	PHROG	phrog_216	integrase	integration and excision
UHGV-0012504_2	UniRef90	UniRef90_A0A890GUG4	Tyrosine-type recombinase/integrase	NA
UHGV-0012504_2	eggNOG-mapper	1123263.AUKY01000170_gene2055	Integrase	NA
UHGV-0012504_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0012504_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0012504_2	Structural annotation	PF00589, MF_02055, NF040815, COG4973	NA	NA
UHGV-0012504_3	PHROG	phrog_8489	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0012504_3	UniRef90	UniRef90_R3J5J3	Phage replication initiation protein	NA
UHGV-0012504_3	eggNOG-mapper	1415774.U728_867	DnaD domain protein	NA
UHGV-0012504_3	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0012504_3	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-0012504_4	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0012504_4	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0012504_4	UniRef90	UniRef90_R6WX70	AAA domain-containing protein	NA
UHGV-0012504_4	eggNOG-mapper	657322.FPR_04640	NA	NA
UHGV-0012504_4	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0012504_4	NCBIFam	NF005992.0	hypothetical protein	NA
UHGV-0012504_4	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0012504_4	Structural annotation	PF01695, MF_01919, NF005992, COG1484	NA	NA
UHGV-0012504_13	PHROG	phrog_22292	NA	unknown function
UHGV-0012504_14	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0012504_14	UniRef90	UniRef90_R6R5K5	Protein 64 protein	NA
UHGV-0012504_14	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-0012504_15	PHROG	phrog_803	host nuclease inhibitor	moron, auxiliary metabolic gene and host takeover
UHGV-0012504_15	eggNOG-mapper	173707.Q938M6_9CAUD	NA	NA
UHGV-0012504_19	PHROG	phrog_2715	NA	unknown function
UHGV-0012504_19	eggNOG-mapper	642492.Clole_0950	NA	NA
UHGV-0012504_19	Structural annotation	PF18406	NA	NA
UHGV-0012504_21	PHROG	phrog_236	nucleotide kinase	other
UHGV-0012504_21	UniRef90	UniRef90_A0A6B4UVZ1	NA	NA
UHGV-0012504_21	eggNOG-mapper	673376.F2VHW0_9CAUD	NA	NA
UHGV-0012504_21	Pfam	PF11753	NA	DUF3310
UHGV-0012504_21	Structural annotation	PF11753	NA	NA
UHGV-0012504_22	PHROG	phrog_22292	NA	unknown function
UHGV-0012504_23	PHROG	phrog_229	MazG-like pyrophosphatase	other
UHGV-0012504_23	UniRef90	UniRef90_UPI00156E6FB9	nucleoside triphosphate pyrophosphohydrolase family protein	NA
UHGV-0012504_23	eggNOG-mapper	411473.RUMCAL_00277	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-0012504_23	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0012504_23	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0012504_23	Structural annotation	PF03819, MF_01020, NF001613, COG0140	NA	NA
UHGV-0012504_25	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0012504_25	eggNOG-mapper	428127.EUBDOL_01513	NA	NA
UHGV-0012504_25	AcrCatalog	cluster_47493	NA	NA
UHGV-0012504_26	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0012504_26	Structural annotation	TIGR01636	NA	NA
UHGV-0012504_28	PHROG	phrog_1305	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0012504_28	UniRef90	UniRef90_UPI001F48104E	NA	NA
UHGV-0012504_28	eggNOG-mapper	1462526.BN990_01190	NA	NA
UHGV-0012504_28	Structural annotation	COG2250	NA	NA
UHGV-0012504_29	PHROG	phrog_3675	NA	unknown function
UHGV-0012504_29	UniRef90	UniRef90_A0A174SAX8	YjcQ protein	NA
UHGV-0012504_29	eggNOG-mapper	665950.HMPREF1025_02533	YjcQ protein	NA
UHGV-0012504_29	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-0012504_34	Pfam	PF18789	Defence against restriction A C-terminal	DarA_C
UHGV-0012504_34	Structural annotation	PF18789	NA	NA
UHGV-0012504_39	eggNOG-mapper	1121866.AUGK01000006_gene875	NA	NA
UHGV-0012504_41	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0012504_41	UniRef90	UniRef90_D9R5G0	Terminase	NA
UHGV-0012504_41	eggNOG-mapper	610130.Closa_0741	Phage Terminase	NA
UHGV-0012504_41	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0012504_41	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0012504_41	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0012504_41	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0012504_42	PHROG	phrog_12	portal protein	head and packaging
UHGV-0012504_42	UniRef90	UniRef90_A0A4U7J9G4	Phage portal protein	NA
UHGV-0012504_42	eggNOG-mapper	1235792.C808_00084	Phage portal protein, HK97 family	NA
UHGV-0012504_42	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0012504_42	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0012504_42	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0012504_43	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0012504_43	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0012504_43	UniRef90	UniRef90_A0JQM5	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0012504_43	eggNOG-mapper	1209989.TepiRe1_2604	Serine dehydrogenase proteinase	NA
UHGV-0012504_43	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0012504_43	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0012504_43	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0012504_44	PHROG	phrog_10	major head protein	head and packaging
UHGV-0012504_44	UniRef90	UniRef90_A0A1H3JSQ9	Phage major capsid protein, HK97 family	NA
UHGV-0012504_44	eggNOG-mapper	864178.E2ELI5_9CAUD	peptidase activity	NA
UHGV-0012504_44	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0012504_44	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0012504_44	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0012504_45	PHROG	phrog_749	NA	unknown function
UHGV-0012504_45	UniRef90	UniRef90_A0A371IJS1	Phage gp6-like head-tail connector protein	NA
UHGV-0012504_45	eggNOG-mapper	86416.Clopa_0342	NA	NA
UHGV-0012504_49	PHROG	phrog_88	major tail protein	tail
UHGV-0012504_49	UniRef90	UniRef90_A6M958	Putative major capsid protein	NA
UHGV-0012504_49	eggNOG-mapper	447909.A6M958_9VIRU	NA	NA
UHGV-0012504_49	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0012504_49	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0012504_51	KOfam	K16808	NUMA1; nuclear mitotic apparatus protein 1	NA
UHGV-0012504_51	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0012504_51	UniRef90	UniRef90_A0A174LG45	Phage-related minor tail protein	NA
UHGV-0012504_51	eggNOG-mapper	938288.HG326225_gene1132	Phage-related minor tail protein	NA
UHGV-0012504_51	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0012504_51	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0012504_51	COG	COG5283	Phage-related tail protein	NA
UHGV-0012504_52	PHROG	phrog_13564	minor tail protein	tail
UHGV-0012504_52	UniRef90	UniRef90_UPI0004236ECE	phage baseplate protein	NA
UHGV-0012504_52	eggNOG-mapper	411471.SUBVAR_05861	NA	NA
UHGV-0012504_52	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0012504_53	eggNOG-mapper	665956.HMPREF1032_00106	NA	NA
UHGV-0012504_54	eggNOG-mapper	665956.HMPREF1032_00105	NA	NA
UHGV-0012504_56	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0012504_56	Structural annotation	NF040910	NA	NA
UHGV-0012504_59	PHROG	phrog_24103	NA	unknown function
UHGV-0012504_59	eggNOG-mapper	1118055.CAGU01000013_gene761	NA	NA
UHGV-0012504_61	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0012504_61	Structural annotation	NF040910	NA	NA
UHGV-0012504_65	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0012504_65	PHROG	phrog_7698	endolysin	lysis
UHGV-0012504_65	UniRef90	UniRef90_F0H1M5	SH3 domain protein	NA
UHGV-0012504_65	eggNOG-mapper	1033733.CAEK01000007_gene1632	Bacterial SH3 domain	NA
UHGV-0012504_65	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0012504_65	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0012504_66	PHROG	phrog_881	holin	lysis
UHGV-0012504_66	UniRef90	UniRef90_UPI001A9A8803	phage holin	NA
UHGV-0012504_66	eggNOG-mapper	1321782.HMPREF1986_02282	Putative phage holin Dp-1	NA
UHGV-0012504_66	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0012504_66	Structural annotation	PF16938, COG3237	NA	NA
UHGV-0012504_67	PHROG	phrog_37604	NA	unknown function
UHGV-0012504_67	eggNOG-mapper	457412.RSAG_01109	NA	NA
UHGV-0012504_68	Structural annotation	PF07638, MF_00674, TIGR02954, COG1846	NA	NA
UHGV-0012504_69	PHROG	phrog_21718	NA	unknown function
UHGV-0012504_69	eggNOG-mapper	476272.RUMHYD_01768	NA	NA
UHGV-0012504_70	eggNOG-mapper	641112.ACOK01000103_gene525	NA	NA
UHGV-0012504_71	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0012504_73	Pfam	PF10097	NA	DUF2335
UHGV-0012504_74	KOfam	K14059	int; integrase	NA
UHGV-0012504_74	PHROG	phrog_1	integrase	integration and excision
UHGV-0012504_74	UniRef90	UniRef90_A0A890GWT1	Site-specific integrase	NA
UHGV-0012504_74	eggNOG-mapper	1123263.AUKY01000015_gene1631	Pfam:Integrase_AP2	NA
UHGV-0012504_74	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0012504_74	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0012504_74	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0012504_76	Structural annotation	PF04545, MF_00674, TIGR01636, COG1191	NA	NA