UHGV-0012586

Genome information

Genome length 27,301 bps

CDS count 38

Completeness 75.67% (medium-quality)

geNomad score 0.9764

Prediction confidence Confident

Genome information
Genome ID	UHGV-0012586
vOTU ID	vOTU-032821
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Nepal_MoBio_Fiber-Hadza-Nepal_B_9_CHE0002SZ__NODE_1144_length_50566_cov_4.247658_1
BioSample	SAMEA4969120
Country	Nepal
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	75.67% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9764
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.42
Jumbo phage	No

Genome content
Genome length	27,301 bps
GC content	59.06%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	38
CDS density	91.91%
Average CDS length	663.87 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0012586_1	KOfam	K14059	int; integrase	NA
UHGV-0012586_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0012586_1	UniRef90	UniRef90_R5S716	Site-specific recombinase phage integrase family	NA
UHGV-0012586_1	eggNOG-mapper	428125.CLOLEP_02743	Belongs to the 'phage' integrase family	NA
UHGV-0012586_1	Pfam	PF02899	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_1
UHGV-0012586_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0012586_1	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0012586_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0012586_4	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0012586_4	UniRef90	UniRef90_A0A6G3LX22	XRE family transcriptional regulator	NA
UHGV-0012586_4	eggNOG-mapper	211114.JOEF01000005_gene2238	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0012586_4	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0012586_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0012586_5	KOfam	K07273	acm; lysozyme	NA
UHGV-0012586_5	PHROG	phrog_291	endolysin	lysis
UHGV-0012586_5	UniRef90	UniRef90_A0A3D2N6C3	Glycoside hydrolase	NA
UHGV-0012586_5	eggNOG-mapper	641112.ACOK01000108_gene1814	hydrolase, family 25	NA
UHGV-0012586_5	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0012586_5	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0012586_5	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0012586_5	Structural annotation	PF01183, MF_00691, TIGR02869, NF003814, COG3757	NA	NA
UHGV-0012586_7	PHROG	phrog_1863	NA	unknown function
UHGV-0012586_7	eggNOG-mapper	693746.OBV_18260	NA	NA
UHGV-0012586_8	PHROG	phrog_30133	virion structural protein	head and packaging
UHGV-0012586_8	eggNOG-mapper	1121935.AQXX01000130_gene2403	Fibronectin type 3 domain	NA
UHGV-0012586_8	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0012586_9	Pfam	PF09458	H-type lectin domain	H_lectin
UHGV-0012586_9	Structural annotation	PF09458, NF012201	NA	NA
UHGV-0012586_12	Structural annotation	PF20458, TIGR02241, COG3499	NA	NA
UHGV-0012586_13	KOfam	K16808	NUMA1; nuclear mitotic apparatus protein 1	NA
UHGV-0012586_13	PHROG	phrog_5755	tail length tape measure protein	tail
UHGV-0012586_13	UniRef90	UniRef90_F1TFJ3	Phage tail tape measure protein, TP901 family	NA
UHGV-0012586_13	eggNOG-mapper	665950.HMPREF1025_02680	Phage-related minor tail protein	NA
UHGV-0012586_13	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0012586_13	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0012586_13	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0012586_14	PHROG	phrog_3033	NA	unknown function
UHGV-0012586_14	UniRef90	UniRef90_A0A2X2UJ60	Phage-like protein	NA
UHGV-0012586_14	eggNOG-mapper	658088.HMPREF0987_01112	NA	NA
UHGV-0012586_15	PHROG	phrog_709	NA	unknown function
UHGV-0012586_15	eggNOG-mapper	1410624.JNKK01000017_gene1983	NA	NA
UHGV-0012586_15	Structural annotation	PF11836	NA	NA
UHGV-0012586_16	PHROG	phrog_88	major tail protein	tail
UHGV-0012586_16	UniRef90	UniRef90_UPI0008FEA5D7	phage tail protein	NA
UHGV-0012586_16	eggNOG-mapper	1118059.CAHC01000003_gene804	phage major tail protein, phi13 family	NA
UHGV-0012586_16	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0012586_16	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0012586_17	PHROG	phrog_78	tail terminator	connector
UHGV-0012586_17	eggNOG-mapper	1280671.AUJH01000012_gene3145	NA	NA
UHGV-0012586_17	Structural annotation	PF05657	NA	NA
UHGV-0012586_18	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0012586_18	UniRef90	UniRef90_A0A3R6JHL3	HK97 gp10 family phage protein	NA
UHGV-0012586_18	eggNOG-mapper	764299.STRIC_2426	NA	NA
UHGV-0012586_18	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0012586_18	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0012586_19	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0012586_19	UniRef90	UniRef90_UPI001959FB60	phage head closure protein	NA
UHGV-0012586_19	eggNOG-mapper	1211814.CAPG01000074_gene3451	head-tail adaptor	NA
UHGV-0012586_19	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0012586_19	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0012586_19	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0012586_20	PHROG	phrog_5223	neck protein	connector
UHGV-0012586_20	UniRef90	UniRef90_A0A316QJ07	DNA-packaging protein	NA
UHGV-0012586_20	eggNOG-mapper	1211814.CAPG01000074_gene3452	NA	NA
UHGV-0012586_20	Structural annotation	TIGR01560	NA	NA
UHGV-0012586_21	PHROG	phrog_10	major head protein	head and packaging
UHGV-0012586_21	UniRef90	UniRef90_A0A1Y4UTW1	Phage major capsid protein	NA
UHGV-0012586_21	eggNOG-mapper	742740.HMPREF9474_04304	Phage capsid family	NA
UHGV-0012586_21	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0012586_21	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0012586_21	Structural annotation	PF05065, PF09032, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0012586_22	KOfam	K06904	NA	NA
UHGV-0012586_22	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0012586_22	UniRef90	UniRef90_UPI001C035284	HK97 family phage prohead protease	NA
UHGV-0012586_22	eggNOG-mapper	324057.Pjdr2_1542	Caudovirus prohead serine protease	NA
UHGV-0012586_22	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0012586_22	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0012586_22	COG	COG3740	Phage head maturation protease	NA
UHGV-0012586_22	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0012586_23	PHROG	phrog_12	portal protein	head and packaging
UHGV-0012586_23	UniRef90	UniRef90_A0A1H4BNH5	Phage portal protein, HK97 family	NA
UHGV-0012586_23	eggNOG-mapper	1235755.ANAM01000006_gene2373	Phage portal protein	NA
UHGV-0012586_23	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0012586_23	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0012586_23	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0012586_24	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0012586_24	UniRef90	UniRef90_A0A1G5XL54	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0012586_24	eggNOG-mapper	1160721.RBI_I01585	large subunit	NA
UHGV-0012586_24	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0012586_24	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0012586_24	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0012586_24	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0012586_25	PHROG	phrog_1066	NA	unknown function
UHGV-0012586_25	eggNOG-mapper	1111134.HMPREF1253_0387	NA	NA
UHGV-0012586_25	Structural annotation	PF05119, COG1382	NA	NA
UHGV-0012586_26	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0012586_26	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0012586_26	UniRef90	UniRef90_A0A3D1WUV6	HNH endonuclease	NA
UHGV-0012586_26	eggNOG-mapper	260799.BAS3512	HNH endonuclease	NA
UHGV-0012586_26	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0012586_28	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0012586_28	eggNOG-mapper	1203606.HMPREF1526_00985	NA	NA
UHGV-0012586_28	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0012586_29	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0012586_29	Structural annotation	PF00436, MF_00984, TIGR04418, COG2965	NA	NA
UHGV-0012586_31	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0012586_31	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0012586_31	UniRef90	UniRef90_A0A2N2CMR0	DNA helicase	NA
UHGV-0012586_31	eggNOG-mapper	1226322.HMPREF1545_00095	DnaB-like helicase N terminal domain	NA
UHGV-0012586_31	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0012586_31	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0012586_31	COG	COG0305	Replicative DNA helicase	NA
UHGV-0012586_31	Structural annotation	PF03796, PF00772, MF_04155, NF005240, COG0305	NA	NA
UHGV-0012586_32	PHROG	phrog_11233	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0012586_32	UniRef90	UniRef90_UPI001E488EAA	helix-turn-helix domain-containing protein	NA
UHGV-0012586_32	eggNOG-mapper	742738.HMPREF9460_04047	DnaD domain protein	NA
UHGV-0012586_32	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0012586_32	Structural annotation	PF13463, TIGR01889, COG1846	NA	NA
UHGV-0012586_34	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0012586_38	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0012586_38	UniRef90	UniRef90_R6R5K5	Protein 64 protein	NA
UHGV-0012586_38	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA