UHGV-0012623

Genome information

Genome length 41,042 bps

CDS count 71

Completeness 99.90% (high-quality)

geNomad score 0.9664

Prediction confidence Confident

Genome information
Genome ID	UHGV-0012623
vOTU ID	vOTU-065966
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-A-D_C_6_1128__k127_1732044__flag_0__multi_13.9968__len_41042
BioSample	NA
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9664
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.28
Jumbo phage	No

Genome content
Genome length	41,042 bps
GC content	27.97%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	71
CDS density	92.20%
Average CDS length	535.31 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0012623_1	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0012623_1	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0012623_1	UniRef90	UniRef90_A0A7V6W3I7	Helix-turn-helix transcriptional regulator (Fragment)	NA
UHGV-0012623_1	eggNOG-mapper	1280671.AUJH01000019_gene2319	Helix-turn-helix domain	NA
UHGV-0012623_1	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0012623_1	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0012623_1	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0012623_2	PHROG	phrog_7566	NA	unknown function
UHGV-0012623_5	Structural annotation	PF01844	NA	NA
UHGV-0012623_6	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0012623_6	PHROG	phrog_7698	endolysin	lysis
UHGV-0012623_6	UniRef90	UniRef90_A0A353JBB4	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0012623_6	eggNOG-mapper	428125.CLOLEP_01782	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0012623_6	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0012623_6	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0012623_6	Structural annotation	PF01510, PF18342, PF08239, MF_04111, NF040670, NF008758, COG5632	NA	NA
UHGV-0012623_7	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0012623_8	PHROG	phrog_13632	NA	unknown function
UHGV-0012623_8	eggNOG-mapper	1399942.U3PIX4_9CAUD	NA	NA
UHGV-0012623_9	PHROG	phrog_2712	tail fiber protein	tail
UHGV-0012623_9	Structural annotation	NF012201	NA	NA
UHGV-0012623_11	PHROG	phrog_24267	NA	unknown function
UHGV-0012623_11	UniRef90	UniRef90_R5LPM8	Putative truncated prophage LambdaSa1 minor structural protein	NA
UHGV-0012623_11	eggNOG-mapper	1123302.KB904167_gene530	the current gene model (or a revised gene model) may contain a frame shift	NA
UHGV-0012623_11	COG	COG4675	Phage tail collar domain	NA
UHGV-0012623_11	Structural annotation	COG4675	NA	NA
UHGV-0012623_12	PHROG	phrog_372	tail protein	tail
UHGV-0012623_12	UniRef90	UniRef90_U4KJ83	NA	NA
UHGV-0012623_12	eggNOG-mapper	120574.Q94M33_9CAUD	N-acetylmuramoyl-L-alanine amidase activity	NA
UHGV-0012623_12	Pfam	PF05895	NA	DUF859
UHGV-0012623_12	Structural annotation	PF05895, MF_04116, NF010681, COG3291	NA	NA
UHGV-0012623_13	COG	COG4926	Phage-related protein	NA
UHGV-0012623_13	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0012623_14	Pfam	PF20458	NA	DUF6711
UHGV-0012623_14	Structural annotation	PF20458, TIGR02126, COG5437	NA	NA
UHGV-0012623_15	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0012623_15	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-0012623_15	eggNOG-mapper	60520.HR47_13420	domain protein	NA
UHGV-0012623_15	COG	COG1511	NA	NA
UHGV-0012623_16	PHROG	phrog_706	NA	unknown function
UHGV-0012623_16	UniRef90	UniRef90_A0A1V6D632	Bacteriophage Gp15 protein	NA
UHGV-0012623_16	eggNOG-mapper	645991.Sgly_0348	Bacteriophage Gp15 protein	NA
UHGV-0012623_16	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0012623_16	Structural annotation	PF06854	NA	NA
UHGV-0012623_17	Structural annotation	PF10666	NA	NA
UHGV-0012623_18	PHROG	phrog_3099	NA	unknown function
UHGV-0012623_18	eggNOG-mapper	1120998.AUFC01000030_gene2241	NA	NA
UHGV-0012623_18	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0012623_19	PHROG	phrog_3266	tail completion	connector
UHGV-0012623_19	UniRef90	UniRef90_A0A353JB81	Chloramphenicol resistance protein	NA
UHGV-0012623_19	eggNOG-mapper	1280692.AUJL01000004_gene841	NA	NA
UHGV-0012623_19	Structural annotation	PF12691	NA	NA
UHGV-0012623_20	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0012623_20	eggNOG-mapper	397290.C810_05200	NA	NA
UHGV-0012623_20	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0012623_20	Structural annotation	PF11114	NA	NA
UHGV-0012623_21	PHROG	phrog_3366	NA	unknown function
UHGV-0012623_21	eggNOG-mapper	883114.HMPREF9709_01191	NA	NA
UHGV-0012623_21	Pfam	PF20536	NA	DUF6751
UHGV-0012623_21	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0012623_22	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0012623_23	PHROG	phrog_544	major head protein	head and packaging
UHGV-0012623_23	UniRef90	UniRef90_A0A7K3ZAF7	N4-gp56 family major capsid protein (Fragment)	NA
UHGV-0012623_23	eggNOG-mapper	1499683.CCFF01000017_gene2147	NA	NA
UHGV-0012623_23	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0012623_23	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0012623_24	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0012623_24	UniRef90	UniRef90_A0A843HUH9	Phage scaffolding protein (Fragment)	NA
UHGV-0012623_24	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0012623_26	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0012623_26	UniRef90	UniRef90_A0A136WBX5	Phage minor capsid protein 2	NA
UHGV-0012623_26	eggNOG-mapper	693746.OBV_18050	Phage minor capsid protein 2	NA
UHGV-0012623_26	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0012623_26	COG	COG2369	NA	NA
UHGV-0012623_27	PHROG	phrog_1233	NA	unknown function
UHGV-0012623_27	UniRef90	UniRef90_R7IWF8	Peptidase_M78 domain-containing protein	NA
UHGV-0012623_27	Structural annotation	PF13058	NA	NA
UHGV-0012623_28	PHROG	phrog_533	portal protein	head and packaging
UHGV-0012623_28	UniRef90	UniRef90_A0A136WBU7	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0012623_28	eggNOG-mapper	663278.Ethha_0500	NA	NA
UHGV-0012623_28	Structural annotation	PF05133, MF_04120, TIGR01542, COG4695	NA	NA
UHGV-0012623_29	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0012623_29	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0012623_29	UniRef90	UniRef90_A0A353JAA1	PBSX family phage terminase large subunit (Fragment)	NA
UHGV-0012623_29	eggNOG-mapper	411461.DORFOR_01162	Phage terminase, large subunit, PBSX family	NA
UHGV-0012623_29	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0012623_29	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0012623_29	COG	COG1783	Phage terminase large subunit	NA
UHGV-0012623_29	Structural annotation	PF04466, PF17288, PF03592, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0012623_30	Structural annotation	PF10922	NA	NA
UHGV-0012623_32	Structural annotation	PF16535, PF04545	NA	NA
UHGV-0012623_33	Structural annotation	PF10654	NA	NA
UHGV-0012623_34	Structural annotation	PF19157, NF002506	NA	NA
UHGV-0012623_35	PHROG	phrog_388	nucleotidyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0012623_35	UniRef90	UniRef90_A0A843FSU3	Nucleotidyltransferase domain-containing protein	NA
UHGV-0012623_35	eggNOG-mapper	498761.HM1_0723	Predicted nucleotidyltransferase	NA
UHGV-0012623_35	Structural annotation	PF10127, NF000079, COG3541	NA	NA
UHGV-0012623_36	KOfam	K14680	E6.5.1.3; RNA ligase [EC:6.5.1.3]	NA
UHGV-0012623_36	PHROG	phrog_8238	RNA ligase	DNA, RNA and nucleotide metabolism
UHGV-0012623_36	UniRef90	UniRef90_A0A3A8ZX80	Calcineurin	NA
UHGV-0012623_36	eggNOG-mapper	411474.COPEUT_00782	AAA domain	NA
UHGV-0012623_36	Pfam	PF13671	AAA domain	AAA_33
UHGV-0012623_36	Pfam	PF00149	Calcineurin-like phosphoesterase	Metallophos
UHGV-0012623_36	Pfam	PF09511	RNA ligase	RNA_lig_T4_1
UHGV-0012623_36	COG	COG0639	Diadenosine tetraphosphatase ApaH/serine/threonine protein phosphatase, PP2A family	NA
UHGV-0012623_36	Structural annotation	PF09511, PF13671, MF_04149, MF_01443, MF_03171, TIGR04075, COG5324, COG4639, COG2129	NA	NA
UHGV-0012623_40	PHROG	phrog_3392	NA	unknown function
UHGV-0012623_40	UniRef90	UniRef90_A8AT45	Gp21	NA
UHGV-0012623_40	eggNOG-mapper	40523.A8AT45_BPA51	NA	NA
UHGV-0012623_47	PHROG	phrog_24333	DNA methyltransferase	other
UHGV-0012623_47	UniRef90	UniRef90_A0A6M3J7P5	Putative methyltransferase	NA
UHGV-0012623_47	eggNOG-mapper	1123278.KB893477_gene3608	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0012623_47	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0012623_47	COG	COG2189	Adenine specific DNA methylase Mod	NA
UHGV-0012623_47	Structural annotation	PF05148, MF_03044, NF033398, COG0863	NA	NA
UHGV-0012623_53	PHROG	phrog_803	host nuclease inhibitor	moron, auxiliary metabolic gene and host takeover
UHGV-0012623_53	eggNOG-mapper	1123309.AQYB01000014_gene918	NA	NA
UHGV-0012623_55	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0012623_55	eggNOG-mapper	411490.ANACAC_00804	NA	NA
UHGV-0012623_55	Structural annotation	NF007281	NA	NA
UHGV-0012623_56	KOfam	K06940	NA	NA
UHGV-0012623_56	PHROG	phrog_32498	NA	unknown function
UHGV-0012623_56	UniRef90	UniRef90_A0A417B0E0	YkgJ family cysteine cluster protein	NA
UHGV-0012623_56	eggNOG-mapper	476272.RUMHYD_03327	Putative zinc- or iron-chelating domain	NA
UHGV-0012623_56	Pfam	PF03692	Putative zinc- or iron-chelating domain	CxxCxxCC
UHGV-0012623_56	Structural annotation	PF03692	NA	NA
UHGV-0012623_57	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0012623_57	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0012623_57	UniRef90	UniRef90_A0A353JB48	Single-stranded DNA-binding protein	NA
UHGV-0012623_57	eggNOG-mapper	1444309.JAQG01000074_gene77	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0012623_57	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0012623_57	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0012623_57	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0012623_57	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0012623_57	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0012623_59	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0012623_59	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0012623_59	UniRef90	UniRef90_A0A353JB44	Lactamase_B domain-containing protein	NA
UHGV-0012623_59	eggNOG-mapper	665956.HMPREF1032_03101	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-0012623_59	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0012623_59	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0012623_59	Structural annotation	PF12706, MF_01818, TIGR03307, COG1234	NA	NA
UHGV-0012623_60	PHROG	phrog_2760	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0012623_60	UniRef90	UniRef90_A0A353JB43	Phage recombination protein Bet	NA
UHGV-0012623_60	eggNOG-mapper	86416.Clopa_3395	Phage recombination protein Bet	NA
UHGV-0012623_60	Pfam	PF03837	RecT family	RecT
UHGV-0012623_60	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-0012623_60	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0012623_60	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-0012623_61	PHROG	phrog_674	NA	unknown function
UHGV-0012623_61	UniRef90	UniRef90_A0A374N9T8	NA	NA
UHGV-0012623_61	eggNOG-mapper	888059.HMPREF9071_2097	NA	NA
UHGV-0012623_61	Structural annotation	PF07083	NA	NA
UHGV-0012623_62	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0012623_62	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0012623_62	UniRef90	UniRef90_A0A832QCU5	Single-stranded DNA-binding protein	NA
UHGV-0012623_62	eggNOG-mapper	702450.CUW_1861	Single-stranded DNA-binding protein	NA
UHGV-0012623_62	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0012623_62	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0012623_62	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0012623_64	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-0012623_64	PHROG	phrog_6251	replisome organizer DnaA-like	DNA, RNA and nucleotide metabolism
UHGV-0012623_64	UniRef90	UniRef90_A0A353JBC1	DnaB_2 domain-containing protein (Fragment)	NA
UHGV-0012623_64	eggNOG-mapper	1231377.C426_1702	dnaD_dom DnaD domain protein	NA
UHGV-0012623_64	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0012623_64	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0012623_64	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0012623_64	Structural annotation	PF09681, PF07261, TIGR01714, TIGR01446, COG3935	NA	NA
UHGV-0012623_67	KOfam	K15773	hipB; HTH-type transcriptional regulator / antitoxin HipB	NA
UHGV-0012623_67	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0012623_67	UniRef90	UniRef90_A0A7Z9DJK6	Cro/CI family transcriptional regulator	NA
UHGV-0012623_67	eggNOG-mapper	768486.EHR_3005	Helix-turn-helix XRE-family like proteins	NA
UHGV-0012623_67	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0012623_67	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0012623_67	Structural annotation	PF12844, NF041677, COG1396	NA	NA
UHGV-0012623_68	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0012623_68	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0012623_68	UniRef90	UniRef90_A0A353JBB9	HTH cro/C1-type domain-containing protein	NA
UHGV-0012623_68	eggNOG-mapper	1027396.LMOSA_9200	Transcriptional	NA
UHGV-0012623_68	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0012623_68	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0012623_68	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0012623_68	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0012623_69	KOfam	K07707	agrA, blpR, fsrA; two-component system, LytTR family, response regulator AgrA	NA
UHGV-0012623_69	PHROG	phrog_8810	NA	unknown function
UHGV-0012623_69	UniRef90	UniRef90_A0A353JBB8	HTH LytTR-type domain-containing protein	NA
UHGV-0012623_69	eggNOG-mapper	1410653.JHVC01000027_gene1064	response regulator	NA
UHGV-0012623_69	Pfam	PF00072	Response regulator receiver domain	Response_reg
UHGV-0012623_69	Pfam	PF04397	LytTr DNA-binding domain	LytTR
UHGV-0012623_69	COG	COG3279	DNA-binding response regulator, LytR/AlgR family	NA
UHGV-0012623_69	Structural annotation	PF04397, PF00072, MF_00981, NF010684, COG3279	NA	NA
UHGV-0012623_70	PHROG	phrog_2700	NA	unknown function
UHGV-0012623_70	UniRef90	UniRef90_A0A353JBB7	SHOCT domain-containing protein	NA
UHGV-0012623_70	eggNOG-mapper	565664.EFXG_01134	Short C-terminal domain	NA
UHGV-0012623_70	Pfam	PF09851	Short C-terminal domain	SHOCT
UHGV-0012623_70	Structural annotation	PF08000, COG3402	NA	NA
UHGV-0012623_71	KOfam	K14059	int; integrase	NA
UHGV-0012623_71	PHROG	phrog_1	integrase	integration and excision
UHGV-0012623_71	UniRef90	UniRef90_A0A843GV89	Site-specific integrase	NA
UHGV-0012623_71	eggNOG-mapper	1124578.H0UST3_9CAUD	Phage integrase family	NA
UHGV-0012623_71	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0012623_71	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0012623_71	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0012623_71	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA