UHGV-0012926

Genome information

Genome length 37,734 bps

CDS count 51

Completeness 98.18% (high-quality)

geNomad score 0.9757

Prediction confidence Confident

Genome information
Genome ID	UHGV-0012926
vOTU ID	vOTU-010493
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-A-D_D_14_1620__NODE_2384_length_37734_cov_17.891813
BioSample	SAMEA4765905
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.18% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9757
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - viral or bacterial
viralVerify score	-2.59
Jumbo phage	No

Genome content
Genome length	37,734 bps
GC content	57.05%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	86.00%
Average CDS length	638.65 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0012926_1	eggNOG-mapper	1519439.JPJG01000011_gene47	UvrD-like helicase C-terminal domain	NA
UHGV-0012926_1	COG	COG0210	Superfamily I DNA or RNA helicase	NA
UHGV-0012926_2	UniRef90	UniRef90_A0A352RNL5	Flavin oxidoreductase	NA
UHGV-0012926_2	eggNOG-mapper	1519439.JPJG01000011_gene48	Flavin reductase like domain	NA
UHGV-0012926_2	Pfam	PF01613	Flavin reductase like domain	Flavin_Reduct
UHGV-0012926_2	COG	COG1853	FMN reductase RutF, DIM6/NTAB family	NA
UHGV-0012926_3	KOfam	K14059	int; integrase	NA
UHGV-0012926_3	PHROG	phrog_1	integrase	integration and excision
UHGV-0012926_3	UniRef90	UniRef90_UPI00051BA260	site-specific integrase	NA
UHGV-0012926_3	eggNOG-mapper	1519439.JPJG01000011_gene49	Phage integrase family	NA
UHGV-0012926_3	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0012926_3	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0012926_3	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0012926_4	PHROG	phrog_3292	NA	unknown function
UHGV-0012926_4	UniRef90	UniRef90_UPI000D7C6AF6	KTSC domain-containing protein	NA
UHGV-0012926_4	eggNOG-mapper	797209.ZOD2009_10600	KTSC domain	NA
UHGV-0012926_4	Pfam	PF13619	KTSC domain	KTSC
UHGV-0012926_4	Structural annotation	PF13619	NA	NA
UHGV-0012926_6	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0012926_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0012926_6	UniRef90	UniRef90_UPI0008322FF6	helix-turn-helix domain-containing protein	NA
UHGV-0012926_6	eggNOG-mapper	999423.HMPREF9161_00804	Transcriptional	NA
UHGV-0012926_6	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0012926_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0012926_6	Structural annotation	PF13560, NF041951, COG3655	NA	NA
UHGV-0012926_7	UniRef90	UniRef90_UPI000289BD0C	NA	NA
UHGV-0012926_7	eggNOG-mapper	1033737.CAEV01000029_gene313	Helix-turn-helix	NA
UHGV-0012926_7	Structural annotation	PF05339, NF041951, COG1396	NA	NA
UHGV-0012926_10	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0012926_10	UniRef90	UniRef90_A0A433R816	Bro-N domain-containing protein	NA
UHGV-0012926_10	eggNOG-mapper	203119.Cthe_2462	BRO family, N-terminal domain	NA
UHGV-0012926_10	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0012926_10	COG	COG3617	Prophage antirepressor	NA
UHGV-0012926_10	Structural annotation	PF02498, TIGR02681, COG3617	NA	NA
UHGV-0012926_11	Structural annotation	PF12728	NA	NA
UHGV-0012926_14	PHROG	phrog_298	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0012926_14	UniRef90	UniRef90_UPI001ABE80F6	PD-(D/E)XK nuclease family protein	NA
UHGV-0012926_14	eggNOG-mapper	1218075.BAYA01000003_gene606	NA	NA
UHGV-0012926_14	Structural annotation	PF12705, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0012926_15	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0012926_15	UniRef90	UniRef90_A0A1H2YHP3	ERF superfamily protein	NA
UHGV-0012926_15	eggNOG-mapper	1536774.H70357_24790	ERF superfamily	NA
UHGV-0012926_15	Pfam	PF04404	ERF superfamily	ERF
UHGV-0012926_15	Structural annotation	PF04404, TIGR00607, COG5055	NA	NA
UHGV-0012926_16	Structural annotation	PF00436, MF_00984, NF006297, COG0629	NA	NA
UHGV-0012926_17	PHROG	phrog_2289	helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0012926_17	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0012926_18	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0012926_18	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0012926_18	UniRef90	UniRef90_A0A136WJ13	Endodeoxyribonuclease RusA	NA
UHGV-0012926_18	eggNOG-mapper	665956.HMPREF1032_03604	Endodeoxyribonuclease RusA	NA
UHGV-0012926_18	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0012926_18	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0012926_18	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0012926_21	eggNOG-mapper	445972.ANACOL_00168	NA	NA
UHGV-0012926_23	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0012926_23	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0012926_23	UniRef90	UniRef90_UPI001C128E30	phage antirepressor KilAC domain-containing protein	NA
UHGV-0012926_23	eggNOG-mapper	663952.SDD27957_09050	COG3617 Prophage antirepressor	NA
UHGV-0012926_23	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0012926_23	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0012926_23	COG	COG3617	Prophage antirepressor	NA
UHGV-0012926_23	Structural annotation	PF02498, PF03374, TIGR02681, COG3617	NA	NA
UHGV-0012926_24	UniRef90	UniRef90_A0A7X9CX39	Type II toxin-antitoxin system HicA family toxin	NA
UHGV-0012926_24	Structural annotation	COG1724	NA	NA
UHGV-0012926_26	UniRef90	UniRef90_UPI001957E8CB	protein-export chaperone SecB	NA
UHGV-0012926_26	Pfam	PF02556	Preprotein translocase subunit SecB	SecB
UHGV-0012926_26	COG	COG1952	Preprotein translocase subunit SecB	NA
UHGV-0012926_27	PHROG	phrog_9659	NA	unknown function
UHGV-0012926_27	UniRef90	UniRef90_UPI000A26FDC2	NA	NA
UHGV-0012926_27	Structural annotation	PF15956	NA	NA
UHGV-0012926_28	UniRef90	UniRef90_A0A810QFN4	LPD3 domain-containing protein	NA
UHGV-0012926_28	eggNOG-mapper	1519439.JPJG01000011_gene53	NA	NA
UHGV-0012926_29	eggNOG-mapper	693746.OBV_01600	NA	NA
UHGV-0012926_29	Structural annotation	PF05384, TIGR02971	NA	NA
UHGV-0012926_30	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0012926_30	PHROG	phrog_670	endolysin	lysis
UHGV-0012926_30	UniRef90	UniRef90_A0A352RPM1	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0012926_30	eggNOG-mapper	1519439.JPJG01000060_gene1899	Ami_2	NA
UHGV-0012926_30	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0012926_30	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0012926_30	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0012926_31	PHROG	phrog_13256	NA	unknown function
UHGV-0012926_31	eggNOG-mapper	1519439.JPJG01000060_gene1898	NA	NA
UHGV-0012926_33	PHROG	phrog_4105	NA	unknown function
UHGV-0012926_34	Pfam	PF18902	NA	DUF5658
UHGV-0012926_35	eggNOG-mapper	1384065.JAGS01000001_gene2507	domain, Protein	NA
UHGV-0012926_35	Pfam	PF13306	BspA type Leucine rich repeat region (6 copies)	LRR_5
UHGV-0012926_35	NCBIFam	TIGR02167.1	bacterial surface protein 26-residue repeat	NA
UHGV-0012926_35	COG	COG1876	LD-carboxypeptidase LdcB, LAS superfamily	NA
UHGV-0012926_36	PHROG	phrog_5073	tail fiber protein	tail
UHGV-0012926_36	eggNOG-mapper	1408437.JNJN01000002_gene1389	NA	NA
UHGV-0012926_37	PHROG	phrog_156	portal protein	head and packaging
UHGV-0012926_37	eggNOG-mapper	693746.OBV_01670	NA	NA
UHGV-0012926_37	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0012926_38	UniRef90	UniRef90_A0A4D7ASB8	NA	NA
UHGV-0012926_38	eggNOG-mapper	1519439.JPJG01000011_gene54	NA	NA
UHGV-0012926_38	Structural annotation	PF11134, MF_03027, NF010237, TIGR03511, COG2319	NA	NA
UHGV-0012926_39	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0012926_39	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0012926_39	UniRef90	UniRef90_A0A4D7AXL6	Phage terminase large subunit	NA
UHGV-0012926_39	eggNOG-mapper	693746.OBV_01690	phage Terminase large subunit	NA
UHGV-0012926_39	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0012926_39	COG	COG1783	Phage terminase large subunit	NA
UHGV-0012926_39	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0012926_40	PHROG	phrog_422	major head protein	head and packaging
UHGV-0012926_40	UniRef90	UniRef90_A0A6A8VJ17	N4-gp56 family major capsid protein	NA
UHGV-0012926_40	eggNOG-mapper	693746.OBV_01700	NA	NA
UHGV-0012926_40	Pfam	PF13287	Fn3 associated	Fn3_assoc
UHGV-0012926_40	Structural annotation	PF19821, PF13287, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0012926_42	Pfam	PF14205	Cysteine-rich KTR	Cys_rich_KTR
UHGV-0012926_42	Structural annotation	PF14205	NA	NA
UHGV-0012926_43	eggNOG-mapper	1519439.JPJG01000011_gene57	NA	NA
UHGV-0012926_43	Structural annotation	PF11650	NA	NA
UHGV-0012926_45	UniRef90	UniRef90_A0A4D7AM67	DNA-packaging protein	NA
UHGV-0012926_45	eggNOG-mapper	1519439.JPJG01000011_gene59	NA	NA
UHGV-0012926_46	eggNOG-mapper	1519439.JPJG01000053_gene1371	NA	NA
UHGV-0012926_47	PHROG	phrog_15863	NA	unknown function
UHGV-0012926_47	UniRef90	UniRef90_A0A810QAR9	Molecular chaperone DnaJ	NA
UHGV-0012926_47	eggNOG-mapper	693746.OBV_01780	DnaJ molecular chaperone homology domain	NA
UHGV-0012926_47	COG	COG2214	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	NA
UHGV-0012926_50	Structural annotation	PF18336	NA	NA
UHGV-0012926_51	Structural annotation	PF17917	NA	NA