UHGV-0013503

Genome information

Genome length 39,312 bps

CDS count 45

Completeness 85.16% (medium-quality)

geNomad score 0.9227

Prediction confidence Confident

Genome information
Genome ID	UHGV-0013503
vOTU ID	vOTU-022451
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-A-D_E_2_1148__NODE_12_length_259844_cov_22.310347_1_1
BioSample	SAMEA4765608
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	85.16% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9227
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.32
Jumbo phage	No

Genome content
Genome length	39,312 bps
GC content	51.28%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	95.61%
Average CDS length	838.07 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0013503_1	UniRef90	UniRef90_UPI0003B5564A	ribonucleoside-triphosphate reductase	NA
UHGV-0013503_1	eggNOG-mapper	944480.ATUV01000001_gene645	Anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-0013503_1	Pfam	PF13597	Anaerobic ribonucleoside-triphosphate reductase	NRDD
UHGV-0013503_1	COG	COG1328	Anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-0013503_5	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-0013503_5	PHROG	phrog_7	endolysin	lysis
UHGV-0013503_5	UniRef90	UniRef90_A0A843HMV4	Lysozyme	NA
UHGV-0013503_5	eggNOG-mapper	1120963.KB894511_gene2539	Phage lysozyme	NA
UHGV-0013503_5	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-0013503_5	COG	COG3772	Phage-related lysozyme (muramidase), GH24 family	NA
UHGV-0013503_5	Structural annotation	PF00959, MF_04136, COG3772	NA	NA
UHGV-0013503_8	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0013503_8	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0013503_8	UniRef90	UniRef90_R7I1Z4	Reverse transcriptase domain-containing protein	NA
UHGV-0013503_8	eggNOG-mapper	411468.CLOSCI_01505	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0013503_8	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0013503_8	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0013503_8	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0013503_8	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-0013503_9	PHROG	phrog_5302	tail protein	tail
UHGV-0013503_9	UniRef90	UniRef90_A0A345BPB9	Lectin	NA
UHGV-0013503_9	eggNOG-mapper	665956.HMPREF1032_00690	NA	NA
UHGV-0013503_9	Structural annotation	PF16323, COG3979	NA	NA
UHGV-0013503_11	PHROG	phrog_3545	NA	unknown function
UHGV-0013503_11	Pfam	PF13385	Concanavalin A-like lectin/glucanases superfamily	Laminin_G_3
UHGV-0013503_12	PHROG	phrog_1640	tail protein	tail
UHGV-0013503_12	eggNOG-mapper	1150626.PHAMO_180136	NA	NA
UHGV-0013503_12	Pfam	PF03906	Phage T7 tail fibre protein	Phage_T7_tail
UHGV-0013503_13	PHROG	phrog_616	NA	unknown function
UHGV-0013503_13	eggNOG-mapper	1027273.GZ77_06440	competence protein	NA
UHGV-0013503_13	Pfam	PF18798	Large polyvalent protein-associated domain 3	LPD3
UHGV-0013503_13	Pfam	PF18799	Large polyvalent protein-associated domain 5	LPD5
UHGV-0013503_13	Pfam	PF18796	Large polyvalent protein-associated domain 1	LPD1
UHGV-0013503_13	COG	COG0454	N-acetyltransferase, GNAT superfamily (includes histone acetyltransferase HPA2)	NA
UHGV-0013503_16	PHROG	phrog_308	internal virion protein	head and packaging
UHGV-0013503_16	UniRef90	UniRef90_UPI001785D027	NA	NA
UHGV-0013503_16	eggNOG-mapper	1220601.L7TJ86_9CAUD	NA	NA
UHGV-0013503_16	Structural annotation	PF11039, MF_02210, NF011709, COG0456	NA	NA
UHGV-0013503_17	PHROG	phrog_376	tail protein	tail
UHGV-0013503_17	UniRef90	UniRef90_A0A0U1KV93	NA	NA
UHGV-0013503_17	eggNOG-mapper	1123288.SOV_1c10720	NA	NA
UHGV-0013503_18	PHROG	phrog_394	tail protein	tail
UHGV-0013503_18	eggNOG-mapper	207559.Dde_2546	NA	NA
UHGV-0013503_18	Structural annotation	PF17212	NA	NA
UHGV-0013503_19	PHROG	phrog_427	NA	unknown function
UHGV-0013503_19	UniRef90	UniRef90_A0A6G5YJN2	BIG2 domain-containing protein	NA
UHGV-0013503_19	eggNOG-mapper	1200557.JHWV01000001_gene271	NA	NA
UHGV-0013503_19	Pfam	PF21190	Bbp16	Bbp16
UHGV-0013503_19	Structural annotation	PF21190, NF033675	NA	NA
UHGV-0013503_20	PHROG	phrog_212	major head protein	head and packaging
UHGV-0013503_20	UniRef90	UniRef90_A0A077DE24	NA	NA
UHGV-0013503_20	eggNOG-mapper	1072685.IX83_07085	NA	NA
UHGV-0013503_20	Pfam	PF20911	Major capsid protein GP7	GP7
UHGV-0013503_20	Structural annotation	PF20911, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0013503_21	PHROG	phrog_458	protease	other
UHGV-0013503_21	UniRef90	UniRef90_A0A1Y4DJB1	Death domain-containing protein	NA
UHGV-0013503_21	eggNOG-mapper	1279038.KB907338_gene1152	NA	NA
UHGV-0013503_21	Pfam	PF05616	Neisseria meningitidis TspB protein	Neisseria_TspB
UHGV-0013503_22	PHROG	phrog_528	NA	unknown function
UHGV-0013503_23	PHROG	phrog_332	head-tail adaptor	connector
UHGV-0013503_23	UniRef90	UniRef90_A0A3C1FAU3	Phage tail protein	NA
UHGV-0013503_23	eggNOG-mapper	1072685.IX83_07100	Bacteriophage head to tail connecting protein	NA
UHGV-0013503_23	Pfam	PF12236	Bacteriophage head to tail connecting protein	Head-tail_con
UHGV-0013503_23	Structural annotation	PF12236, MF_04120, TIGR01538, COG4695	NA	NA
UHGV-0013503_25	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0013503_25	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0013503_25	UniRef90	UniRef90_A0A6H1ZTH9	Putative terminase	NA
UHGV-0013503_25	eggNOG-mapper	1408428.JNJP01000030_gene963	Terminase RNaseH-like domain	NA
UHGV-0013503_25	COG	COG5323	Phage large terminase packaging protein	NA
UHGV-0013503_25	Structural annotation	PF03237, PF17289, MF_04146, TIGR01547, COG4373	NA	NA
UHGV-0013503_26	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0013503_26	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0013503_26	eggNOG-mapper	387092.NIS_0464	Terminase small subunit	NA
UHGV-0013503_26	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0013503_29	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0013503_29	eggNOG-mapper	261292.Nit79A3_1404	ROK family	NA
UHGV-0013503_29	COG	COG3355	Predicted transcriptional regulator	NA
UHGV-0013503_31	PHROG	phrog_98	NA	unknown function
UHGV-0013503_31	UniRef90	UniRef90_UPI001066B4E0	YopX family protein	NA
UHGV-0013503_31	eggNOG-mapper	1591072.A0A0B5CU08_9CAUD	YopX protein	NA
UHGV-0013503_31	Pfam	PF09643	YopX protein	YopX
UHGV-0013503_31	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0013503_31	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0013503_32	UniRef90	UniRef90_UPI001378525C	NA	NA
UHGV-0013503_32	eggNOG-mapper	1038922.PflQ2_3595	NA	NA
UHGV-0013503_36	KOfam	K05925	METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]	NA
UHGV-0013503_36	PHROG	phrog_359	DNA methyltransferase	other
UHGV-0013503_36	UniRef90	UniRef90_A0A6M3IXH4	Putative methyltransferase	NA
UHGV-0013503_36	eggNOG-mapper	665950.HMPREF1025_01456	MT-A70	NA
UHGV-0013503_36	PADLOC	MTase_II_00048	Type II methyltransferase	RM
UHGV-0013503_36	Pfam	PF05063	MT-A70	MT-A70
UHGV-0013503_36	COG	COG4725	N6-adenosine-specific RNA methylase IME4	NA
UHGV-0013503_36	Structural annotation	PF05063, MF_01872, NF010253, COG4725	NA	NA
UHGV-0013503_39	PHROG	phrog_415	polynucleotide kinase	other
UHGV-0013503_39	UniRef90	UniRef90_UPI000A773F69	polynucleotide kinase	NA
UHGV-0013503_39	eggNOG-mapper	1229203.KI301992_gene693	AAA domain	NA
UHGV-0013503_39	COG	COG4639	Predicted kinase	NA
UHGV-0013503_39	Structural annotation	PF03767, TIGR01533, COG2503	NA	NA
UHGV-0013503_42	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0013503_42	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0013503_42	UniRef90	UniRef90_D2TX40	Helix-turn-helix protein	NA
UHGV-0013503_42	eggNOG-mapper	1121870.AUAA01000038_gene2829	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0013503_42	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0013503_42	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0013503_45	KOfam	K14059	int; integrase	NA
UHGV-0013503_45	PHROG	phrog_1	integrase	integration and excision
UHGV-0013503_45	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0013503_45	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA