UHGV-0013925

Genome information

vOTU vOTU-071965

Genome length 35,136 bps

CDS count 48

Completeness 92.58% (high-quality)

geNomad score 0.9623

Prediction confidence Confident

Genome information
Genome ID	UHGV-0013925
vOTU ID	vOTU-071965
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_PheChl_Fiber-Hadza-Nepal_A_14_1640__NODE_1557_length_52925_cov_6.912561_1
BioSample	SAMEA4765921
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	92.58% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9623
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.56
Jumbo phage	No

Genome content
Genome length	35,136 bps
GC content	58.31%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	94.20%
Average CDS length	692.19 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0013925_1	PHROG	phrog_4105	NA	unknown function
UHGV-0013925_1	eggNOG-mapper	397288.C806_00056	NA	NA
UHGV-0013925_4	PHROG	phrog_19695	NA	unknown function
UHGV-0013925_4	eggNOG-mapper	476272.RUMHYD_01995	NA	NA
UHGV-0013925_7	PHROG	phrog_13879	NA	unknown function
UHGV-0013925_7	eggNOG-mapper	411902.CLOBOL_00124	NA	NA
UHGV-0013925_7	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0013925_8	PHROG	phrog_1194	NA	unknown function
UHGV-0013925_8	eggNOG-mapper	1232449.BAHV02000010_gene2724	NA	NA
UHGV-0013925_8	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0013925_9	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0013925_9	UniRef90	UniRef90_R6TDK7	Phage-related protein-like protein	NA
UHGV-0013925_9	eggNOG-mapper	1226322.HMPREF1545_00059	tape measure	NA
UHGV-0013925_9	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0013925_9	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0013925_10	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-0013925_10	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0013925_10	UniRef90	UniRef90_A0A173REB1	Type II toxin-antitoxin system HicA family toxin	NA
UHGV-0013925_10	eggNOG-mapper	592026.GCWU0000282_000315	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0013925_10	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0013925_10	Structural annotation	PF07927, COG1724	NA	NA
UHGV-0013925_11	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0013925_11	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0013925_11	UniRef90	UniRef90_A0A2V2DYE7	HicB family protein	NA
UHGV-0013925_11	eggNOG-mapper	397288.C806_02660	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-0013925_11	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0013925_11	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0013925_11	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0013925_12	PHROG	phrog_706	NA	unknown function
UHGV-0013925_12	UniRef90	UniRef90_UPI00164D7633	Gp15 family bacteriophage protein	NA
UHGV-0013925_12	eggNOG-mapper	476272.RUMHYD_01784	Bacteriophage Gp15 protein	NA
UHGV-0013925_12	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0013925_12	Structural annotation	PF06854	NA	NA
UHGV-0013925_13	PHROG	phrog_11299	NA	unknown function
UHGV-0013925_13	Structural annotation	PF10666	NA	NA
UHGV-0013925_14	PHROG	phrog_3099	NA	unknown function
UHGV-0013925_14	eggNOG-mapper	665956.HMPREF1032_03060	NA	NA
UHGV-0013925_14	Structural annotation	PF10772, TIGR02126, COG3499	NA	NA
UHGV-0013925_15	Structural annotation	PF12691	NA	NA
UHGV-0013925_16	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0013925_16	UniRef90	UniRef90_UPI001F37068B	minor capsid protein	NA
UHGV-0013925_16	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0013925_16	Structural annotation	PF11114	NA	NA
UHGV-0013925_20	PHROG	phrog_422	major head protein	head and packaging
UHGV-0013925_20	UniRef90	UniRef90_W0U896	Phage major capsid protein	NA
UHGV-0013925_20	eggNOG-mapper	1160721.RBI_II00538	NA	NA
UHGV-0013925_20	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0013925_21	eggNOG-mapper	1125725.HMPREF1325_1331	Phage minor structural protein GP20	NA
UHGV-0013925_21	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0013925_24	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0013925_24	UniRef90	UniRef90_A0A136WBX5	Phage minor capsid protein 2	NA
UHGV-0013925_24	eggNOG-mapper	693746.OBV_18050	Phage minor capsid protein 2	NA
UHGV-0013925_24	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0013925_24	COG	COG2369	NA	NA
UHGV-0013925_25	PHROG	phrog_533	portal protein	head and packaging
UHGV-0013925_25	UniRef90	UniRef90_A0A136WBU7	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0013925_25	eggNOG-mapper	663278.Ethha_0500	NA	NA
UHGV-0013925_25	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0013925_25	Structural annotation	PF05133, MF_04120, TIGR01542, COG4695	NA	NA
UHGV-0013925_26	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0013925_26	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0013925_26	UniRef90	UniRef90_A0A1Y3SII8	Terminase	NA
UHGV-0013925_26	eggNOG-mapper	665956.HMPREF1032_02957	Phage terminase, large subunit, PBSX family	NA
UHGV-0013925_26	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0013925_26	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0013925_26	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0013925_26	COG	COG1783	Phage terminase large subunit	NA
UHGV-0013925_26	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0013925_27	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0013925_27	UniRef90	UniRef90_UPI000AC737F1	helix-turn-helix domain containing protein	NA
UHGV-0013925_27	eggNOG-mapper	411470.RUMGNA_02210	transposase activity	NA
UHGV-0013925_27	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0013925_27	Structural annotation	PF07141	NA	NA
UHGV-0013925_28	eggNOG-mapper	1540257.JQMW01000004_gene433	NA	NA
UHGV-0013925_28	Structural annotation	PF02996	NA	NA
UHGV-0013925_29	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0013925_29	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0013925_29	UniRef90	UniRef90_A0A4Z0QKK3	DEAD/DEAH box helicase	NA
UHGV-0013925_29	eggNOG-mapper	1408424.JHYI01000032_gene3839	SNF2 family N-terminal domain	NA
UHGV-0013925_29	PADLOC	DpdE_00012	DpdE	DPD
UHGV-0013925_29	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0013925_29	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0013925_29	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-0013925_30	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0013925_30	UniRef90	UniRef90_A0A1Q6PU15	Nuclease	NA
UHGV-0013925_30	eggNOG-mapper	411468.CLOSCI_00223	COG NOG18350 non supervised orthologous group	NA
UHGV-0013925_30	Structural annotation	PF01974, MF_01490, NF011269	NA	NA
UHGV-0013925_33	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0013925_33	UniRef90	UniRef90_UPI001F058B5D	virulence-associated E family protein	NA
UHGV-0013925_33	eggNOG-mapper	1134413.ANNK01000054_gene2222	Virulence-associated protein E	NA
UHGV-0013925_33	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-0013925_33	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-0013925_33	Structural annotation	PF05272, MF_04000, NF005477, NF040562, COG5545	NA	NA
UHGV-0013925_34	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-0013925_34	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0013925_34	UniRef90	UniRef90_F6DM10	DNA-directed DNA polymerase	NA
UHGV-0013925_34	eggNOG-mapper	696281.Desru_1077	DNA polymerase	NA
UHGV-0013925_34	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-0013925_34	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-0013925_34	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-0013925_35	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0013925_35	UniRef90	UniRef90_UPI001D063040	NA	NA
UHGV-0013925_35	eggNOG-mapper	1274524.BSONL12_06028	NA	NA
UHGV-0013925_35	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-0013925_35	Structural annotation	PF10991, MF_04153	NA	NA
UHGV-0013925_36	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0013925_36	UniRef90	UniRef90_UPI001D0763C3	NA	NA
UHGV-0013925_36	eggNOG-mapper	764291.STRUR_0708	NA	NA
UHGV-0013925_36	Pfam	PF10926	NA	DUF2800
UHGV-0013925_36	COG	COG2887	RecB family exonuclease	NA
UHGV-0013925_36	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0013925_38	PHROG	phrog_3777	NA	unknown function
UHGV-0013925_38	eggNOG-mapper	445970.ALIPUT_02575	NA	NA
UHGV-0013925_38	Pfam	PF12957	NA	DUF3846
UHGV-0013925_38	Structural annotation	PF12957	NA	NA
UHGV-0013925_44	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0013925_44	UniRef90	UniRef90_A0A2V2F4F9	Transcriptional regulator	NA
UHGV-0013925_44	eggNOG-mapper	1160721.RBI_I00363	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0013925_44	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0013925_45	PHROG	phrog_1914	NA	unknown function
UHGV-0013925_45	UniRef90	UniRef90_A0A2V2EYS6	Peptidase_M78 domain-containing protein	NA
UHGV-0013925_45	eggNOG-mapper	1160721.RBI_I01604	NA	NA
UHGV-0013925_45	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0013925_45	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0013925_45	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0013925_46	eggNOG-mapper	1114856.C496_14291	COG0457 FOG TPR repeat	NA
UHGV-0013925_47	KOfam	K14059	int; integrase	NA
UHGV-0013925_47	PHROG	phrog_1	integrase	integration and excision
UHGV-0013925_47	UniRef90	UniRef90_A0A1Y4L887	Tyr recombinase domain-containing protein	NA
UHGV-0013925_47	eggNOG-mapper	1203606.HMPREF1526_02099	Belongs to the 'phage' integrase family	NA
UHGV-0013925_47	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0013925_47	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0013925_47	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0013925_47	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0013925_48	KOfam	K01198	xynB; xylan 1,4-beta-xylosidase [EC:3.2.1.37]	NA
UHGV-0013925_48	UniRef90	UniRef90_A0A858RJQ6	Family 43 glycosylhydrolase	NA
UHGV-0013925_48	eggNOG-mapper	1396141.BATP01000028_gene2343	Belongs to the glycosyl hydrolase 43 family	NA
UHGV-0013925_48	Pfam	PF04616	Glycosyl hydrolases family 43	Glyco_hydro_43
UHGV-0013925_48	COG	COG3507	Beta-xylosidase	NA