UHGV-0014038

Genome information

Genome length 44,339 bps

CDS count 55

Completeness 100.00% (complete)

geNomad score 0.9802

Prediction confidence Confident

Genome information
Genome ID	UHGV-0014038
vOTU ID	vOTU-003310
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-A-D_C_6_1128__k127_187853__flag_3__multi_202.0000__len_44466
BioSample	SAMEA4765588
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9802
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	19.34
Jumbo phage	No

Genome content
Genome length	44,339 bps
GC content	63.44%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	92.28%
Average CDS length	747.60 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0014038_1	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0014038_1	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0014038_1	UniRef90	UniRef90_A0A3C0NMI6	Terminase-like family protein	NA
UHGV-0014038_1	eggNOG-mapper	1410650.JHWL01000003_gene2834	NA	NA
UHGV-0014038_1	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0014038_1	COG	COG1783	Phage terminase large subunit	NA
UHGV-0014038_1	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0014038_2	PHROG	phrog_17214	endolysin	lysis
UHGV-0014038_2	UniRef90	UniRef90_A0A1V5RXD7	Putative peptidoglycan binding domain protein	NA
UHGV-0014038_2	eggNOG-mapper	1410650.JHWL01000003_gene2815	NA	NA
UHGV-0014038_2	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0014038_2	Structural annotation	PF01471, TIGR02869, COG3409	NA	NA
UHGV-0014038_3	PHROG	phrog_22978	NA	unknown function
UHGV-0014038_3	eggNOG-mapper	1410650.JHWL01000003_gene2814	NA	NA
UHGV-0014038_3	Pfam	PF18760	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
UHGV-0014038_4	KOfam	K24213	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	NA
UHGV-0014038_4	PHROG	phrog_5073	tail fiber protein	tail
UHGV-0014038_4	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0014038_4	Structural annotation	PF10651	NA	NA
UHGV-0014038_6	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0014038_6	PHROG	phrog_1794	amidase	lysis
UHGV-0014038_6	UniRef90	UniRef90_A0A3N0I5S2	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0014038_6	eggNOG-mapper	411468.CLOSCI_00531	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-0014038_6	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0014038_6	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0014038_6	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0014038_6	COG	COG1705	Flagellum-specific peptidoglycan hydrolase FlgJ	NA
UHGV-0014038_6	Structural annotation	PF01510, PF18342, MF_04111, NF008758, NF040670, COG5632	NA	NA
UHGV-0014038_7	PHROG	phrog_4105	NA	unknown function
UHGV-0014038_7	eggNOG-mapper	1120998.AUFC01000030_gene2251	NA	NA
UHGV-0014038_8	PHROG	phrog_1129	holin	lysis
UHGV-0014038_8	UniRef90	UniRef90_A0A316PMB0	Enolase	NA
UHGV-0014038_8	eggNOG-mapper	665956.HMPREF1032_03272	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0014038_8	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0014038_8	Structural annotation	PF06946	NA	NA
UHGV-0014038_12	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-0014038_13	KOfam	K14059	int; integrase	NA
UHGV-0014038_13	PHROG	phrog_1	integrase	integration and excision
UHGV-0014038_13	UniRef90	UniRef90_A0A2Z4QB94	Tyr recombinase domain-containing protein	NA
UHGV-0014038_13	eggNOG-mapper	1423724.BAMM01000034_gene2135	Belongs to the 'phage' integrase family	NA
UHGV-0014038_13	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0014038_13	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0014038_13	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0014038_14	Structural annotation	PF13560, MF_00535, NF041677, COG1396	NA	NA
UHGV-0014038_15	PHROG	phrog_14556	NA	unknown function
UHGV-0014038_15	eggNOG-mapper	477974.Daud_0706	PFAM copper amine oxidase domain protein	NA
UHGV-0014038_15	COG	COG0103	Ribosomal protein S9	NA
UHGV-0014038_16	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0014038_16	UniRef90	UniRef90_UPI001E54DE4F	helix-turn-helix domain-containing protein	NA
UHGV-0014038_16	eggNOG-mapper	1378168.N510_01712	NA	NA
UHGV-0014038_16	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0014038_18	Structural annotation	PF13601, TIGR04176	NA	NA
UHGV-0014038_19	Structural annotation	PF21291, NF041951, COG1513	NA	NA
UHGV-0014038_21	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0014038_24	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0014038_24	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-0014038_24	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-0014038_24	Structural annotation	PF04098, TIGR00607, COG4380	NA	NA
UHGV-0014038_25	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0014038_25	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0014038_25	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0014038_25	Structural annotation	PF05772	NA	NA
UHGV-0014038_26	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0014038_26	UniRef90	UniRef90_A0A3D1LDS4	HNH domain-containing protein	NA
UHGV-0014038_26	eggNOG-mapper	445972.ANACOL_01826	HNH nucleases	NA
UHGV-0014038_27	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0014038_27	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0014038_27	UniRef90	UniRef90_A0A810QFR8	Single-stranded DNA-binding protein	NA
UHGV-0014038_27	eggNOG-mapper	1007096.BAGW01000007_gene1922	Single-strand binding protein family	NA
UHGV-0014038_27	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0014038_27	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0014038_27	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0014038_27	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0014038_27	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0014038_29	PHROG	phrog_16304	NA	unknown function
UHGV-0014038_29	UniRef90	UniRef90_UPI001E36D421	NA	NA
UHGV-0014038_29	eggNOG-mapper	1139219.I569_00067	DnaD domain protein	NA
UHGV-0014038_29	Pfam	PF19808	NA	DUF6291
UHGV-0014038_29	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0014038_29	Structural annotation	PF19808	NA	NA
UHGV-0014038_33	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0014038_33	UniRef90	UniRef90_UPI001C82C15D	NA	NA
UHGV-0014038_33	eggNOG-mapper	342113.DM82_1124	NA	NA
UHGV-0014038_33	Pfam	PF06356	NA	DUF1064
UHGV-0014038_33	Structural annotation	PF06356	NA	NA
UHGV-0014038_35	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0014038_35	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0014038_35	UniRef90	UniRef90_A0A7C4YDR6	PAPS_reduct domain-containing protein	NA
UHGV-0014038_35	eggNOG-mapper	1235800.C819_02256	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0014038_35	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0014038_35	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0014038_35	Structural annotation	PF01507, MF_00063, TIGR00434, COG0175	NA	NA
UHGV-0014038_36	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0014038_36	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0014038_36	UniRef90	UniRef90_H1CIV2	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0014038_36	eggNOG-mapper	1121334.KB911073_gene1852	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0014038_36	PADLOC	MTase_II_00164	Type II methyltransferase	RM
UHGV-0014038_36	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0014038_36	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0014038_36	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0014038_41	eggNOG-mapper	445972.ANACOL_01862	Phage antirepressor protein KilAC domain	NA
UHGV-0014038_41	COG	COG3617	Prophage antirepressor	NA
UHGV-0014038_43	PHROG	phrog_156	portal protein	head and packaging
UHGV-0014038_43	eggNOG-mapper	1410650.JHWL01000003_gene2833	NA	NA
UHGV-0014038_43	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0014038_44	KOfam	K07584	NA	NA
UHGV-0014038_44	PHROG	phrog_4478	peptidase	other
UHGV-0014038_44	UniRef90	UniRef90_A0A7Y3P0U9	Ribosomal-processing cysteine protease Prp	NA
UHGV-0014038_44	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0014038_44	COG	COG2868	NA	NA
UHGV-0014038_44	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-0014038_45	PHROG	phrog_13908	NA	unknown function
UHGV-0014038_45	eggNOG-mapper	1410650.JHWL01000003_gene2831	NA	NA
UHGV-0014038_46	PHROG	phrog_1357	major head protein	head and packaging
UHGV-0014038_46	UniRef90	UniRef90_A0A2V2CFL5	N4-gp56 family major capsid protein	NA
UHGV-0014038_46	eggNOG-mapper	1410650.JHWL01000003_gene2830	NA	NA
UHGV-0014038_46	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0014038_46	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0014038_48	PHROG	phrog_12105	NA	unknown function
UHGV-0014038_48	eggNOG-mapper	1519439.JPJG01000060_gene1891	NA	NA
UHGV-0014038_49	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-0014038_49	eggNOG-mapper	1410650.JHWL01000003_gene2827	NA	NA
UHGV-0014038_49	Structural annotation	PF11134, TIGR03300, NF038126, COG1520	NA	NA
UHGV-0014038_50	Structural annotation	NF038340	NA	NA
UHGV-0014038_51	PHROG	phrog_372	tail protein	tail
UHGV-0014038_51	UniRef90	UniRef90_A0A3E3E6C0	Pilus assembly protein	NA
UHGV-0014038_51	eggNOG-mapper	1235799.C818_01005	the current gene model (or a revised gene model) may contain a frame shift	NA
UHGV-0014038_51	Pfam	PF05895	NA	DUF859
UHGV-0014038_51	COG	COG4675	Phage tail collar domain	NA
UHGV-0014038_51	Structural annotation	PF05895, MF_04116, NF010681, COG3291	NA	NA
UHGV-0014038_53	KOfam	K07726	K07726; putative transcriptional regulator	NA
UHGV-0014038_53	PHROG	phrog_25567	NA	unknown function
UHGV-0014038_53	UniRef90	UniRef90_UPI00164AED9E	helix-turn-helix domain-containing protein	NA
UHGV-0014038_53	eggNOG-mapper	1410631.JHWZ01000002_gene1263	sequence-specific DNA binding	NA
UHGV-0014038_53	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0014038_53	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-0014038_53	Structural annotation	NF040522, COG2944	NA	NA