UHGV-0014054

Genome information

vOTU vOTU-011978

Genome length 35,161 bps

CDS count 51

Completeness 92.39% (high-quality)

geNomad score 0.9781

Prediction confidence Confident

Genome information
Genome ID	UHGV-0014054
vOTU ID	vOTU-011978
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_PheChl_Fiber-Hadza-Nepal_A_8_1525__NODE_878_length_68772_cov_15.644195_1
BioSample	SAMEA4765816
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	92.39% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9781
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	65.72
Jumbo phage	No

Genome content
Genome length	35,161 bps
GC content	45.02%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	92.26%
Average CDS length	638.77 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0014054_1	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0014054_1	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0014054_1	UniRef90	UniRef90_A0A1C6E8P6	Peptidase S24-like	NA
UHGV-0014054_1	eggNOG-mapper	641112.ACOK01000073_gene2861	Peptidase S24-like	NA
UHGV-0014054_1	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0014054_1	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0014054_1	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0014054_1	Structural annotation	PF00717, PF01381, MF_00015, NF041951, NF007621, COG2932	NA	NA
UHGV-0014054_8	PHROG	phrog_26314	NA	unknown function
UHGV-0014054_11	PHROG	phrog_38338	NA	unknown function
UHGV-0014054_11	eggNOG-mapper	1514668.JOOA01000001_gene227	NA	NA
UHGV-0014054_12	PHROG	phrog_8470	NA	unknown function
UHGV-0014054_12	UniRef90	UniRef90_UPI0019175B9C	PcfJ domain-containing protein	NA
UHGV-0014054_12	eggNOG-mapper	641112.ACOK01000073_gene2870	PcfJ-like protein	NA
UHGV-0014054_12	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0014054_12	Structural annotation	PF14284	NA	NA
UHGV-0014054_14	PHROG	phrog_15609	NA	unknown function
UHGV-0014054_14	UniRef90	UniRef90_A0A373VML2	NA	NA
UHGV-0014054_14	eggNOG-mapper	641112.ACOK01000073_gene2872	NA	NA
UHGV-0014054_14	Structural annotation	PF11300, NF033725	NA	NA
UHGV-0014054_15	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0014054_15	UniRef90	UniRef90_UPI0019171ADA	siphovirus Gp157 family protein	NA
UHGV-0014054_15	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0014054_15	Structural annotation	PF05565	NA	NA
UHGV-0014054_16	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0014054_16	UniRef90	UniRef90_UPI001A9B3ECC	AAA family ATPase	NA
UHGV-0014054_16	eggNOG-mapper	754027.HMPREF9554_00709	NA	NA
UHGV-0014054_16	Pfam	PF13479	AAA domain	AAA_24
UHGV-0014054_16	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0014054_17	KOfam	K19789	radD; DNA repair protein RadD	NA
UHGV-0014054_17	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0014054_17	UniRef90	UniRef90_A0A356CZA9	Helicase	NA
UHGV-0014054_17	eggNOG-mapper	1410670.JHXF01000015_gene2270	helicase	NA
UHGV-0014054_17	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0014054_17	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0014054_17	Pfam	PF18766	SWI2/SNF2 ATPase	SWI2_SNF2
UHGV-0014054_17	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0014054_17	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0014054_17	Structural annotation	PF04851, PF00271, MF_01489, TIGR04095, COG1061	NA	NA
UHGV-0014054_18	PHROG	phrog_5702	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0014054_18	UniRef90	UniRef90_UPI000A4B1865	VRR-NUC domain-containing protein	NA
UHGV-0014054_18	eggNOG-mapper	1410670.JHXF01000015_gene2271	VRR_NUC	NA
UHGV-0014054_18	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0014054_18	Structural annotation	PF01870, MF_00130, NF002581, COG1591	NA	NA
UHGV-0014054_19	PHROG	phrog_378	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0014054_19	UniRef90	UniRef90_UPI0006852132	NA	NA
UHGV-0014054_19	eggNOG-mapper	1410670.JHXF01000015_gene2272	NA	NA
UHGV-0014054_19	Pfam	PF05037	NA	DUF669
UHGV-0014054_19	Structural annotation	PF05037, NF004948	NA	NA
UHGV-0014054_20	KOfam	K06919	K06919; putative DNA primase/helicase	NA
UHGV-0014054_20	PHROG	phrog_1829	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0014054_20	UniRef90	UniRef90_A0A6N4ALN1	SF3 helicase domain-containing protein	NA
UHGV-0014054_20	eggNOG-mapper	1410670.JHXF01000015_gene2274	Phage plasmid primase, P4 family	NA
UHGV-0014054_20	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-0014054_20	Pfam	PF19263	NA	DUF5906
UHGV-0014054_20	Pfam	PF03288	Poxvirus D5 protein-like	Pox_D5
UHGV-0014054_20	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-0014054_20	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-0014054_20	Structural annotation	PF08706, PF05272, PF02257, MF_04000, NF011296, COG3378, COG4983	NA	NA
UHGV-0014054_22	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0014054_22	UniRef90	UniRef90_A0A315Y0X2	MazG-like nucleotide pyrophosphohydrolase family protein	NA
UHGV-0014054_22	Structural annotation	PF01503, MF_01019, NF001613, COG0140	NA	NA
UHGV-0014054_23	PHROG	phrog_6072	NA	unknown function
UHGV-0014054_25	PHROG	phrog_8684	NA	unknown function
UHGV-0014054_25	UniRef90	UniRef90_A0A1C6DXL6	YopX protein	NA
UHGV-0014054_25	eggNOG-mapper	1234679.BN424_2637	YopX protein	NA
UHGV-0014054_25	Pfam	PF09643	YopX protein	YopX
UHGV-0014054_25	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0014054_29	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0014054_29	UniRef90	UniRef90_UPI0005D1DECF	NA	NA
UHGV-0014054_29	eggNOG-mapper	742741.HMPREF9475_02386	sigma factor activity	NA
UHGV-0014054_29	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0014054_29	Structural annotation	PF07374, MF_00674, TIGR01636, COG2739	NA	NA
UHGV-0014054_31	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0014054_31	UniRef90	UniRef90_UPI000C75D643	phage terminase small subunit P27 family	NA
UHGV-0014054_31	eggNOG-mapper	536233.CLO_1359	phage terminase small subunit	NA
UHGV-0014054_31	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0014054_31	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0014054_31	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0014054_32	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0014054_32	UniRef90	UniRef90_A0A352DNQ0	Terminase	NA
UHGV-0014054_32	eggNOG-mapper	1414720.CBYM010000002_gene575	Terminase	NA
UHGV-0014054_32	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0014054_32	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0014054_32	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0014054_32	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0014054_33	KOfam	K07450	K07450; putative resolvase	NA
UHGV-0014054_33	PHROG	phrog_6620	transposase	integration and excision
UHGV-0014054_33	UniRef90	UniRef90_A0A1C5SU60	Resolvase, N terminal domain	NA
UHGV-0014054_33	eggNOG-mapper	12336.Q331V0_CBCP	MerR HTH family regulatory protein	NA
UHGV-0014054_33	Pfam	PF00376	MerR family regulatory protein	MerR
UHGV-0014054_33	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0014054_33	NCBIFam	NF033518.0	IS607 family transposase	NA
UHGV-0014054_33	Structural annotation	PF00239, PF12728, NF033518, COG2452	NA	NA
UHGV-0014054_34	KOfam	K07496	K07496; putative transposase	NA
UHGV-0014054_34	PHROG	phrog_506	transposase	integration and excision
UHGV-0014054_34	UniRef90	UniRef90_A0A1C5STU6	Transposase, IS605 OrfB family	NA
UHGV-0014054_34	eggNOG-mapper	1120998.AUFC01000003_gene1405	Transposase, IS605 OrfB family	NA
UHGV-0014054_34	PADLOC	Type_V_V_U4	Cas12	CRISPR-CAS
UHGV-0014054_34	Pfam	PF12323	Helix-turn-helix domain	HTH_OrfB_IS605
UHGV-0014054_34	Pfam	PF01385	Probable transposase	OrfB_IS605
UHGV-0014054_34	Pfam	PF07282	Putative transposase DNA-binding domain	OrfB_Zn_ribbon
UHGV-0014054_34	NCBIFam	NF040570.1	RNA-guided endonuclease TnpB family protein	NA
UHGV-0014054_34	COG	COG0675	Transposase	NA
UHGV-0014054_34	Structural annotation	PF07282, PF01385, NF038281, COG0675	NA	NA
UHGV-0014054_35	PHROG	phrog_12	portal protein	head and packaging
UHGV-0014054_35	UniRef90	UniRef90_A0A315Y4J8	HK97 family phage portal protein	NA
UHGV-0014054_35	eggNOG-mapper	1304866.K413DRAFT_1223	Phage portal protein, HK97 family	NA
UHGV-0014054_35	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0014054_35	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0014054_35	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0014054_36	Structural annotation	PF12305	NA	NA
UHGV-0014054_37	KOfam	K06904	NA	NA
UHGV-0014054_37	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0014054_37	UniRef90	UniRef90_A0A315Y107	HK97 family phage prohead protease	NA
UHGV-0014054_37	eggNOG-mapper	1304866.K413DRAFT_1224	Phage prohead protease, HK97 family	NA
UHGV-0014054_37	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0014054_37	COG	COG3740	Phage head maturation protease	NA
UHGV-0014054_37	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0014054_38	PHROG	phrog_10	major head protein	head and packaging
UHGV-0014054_38	UniRef90	UniRef90_UPI0009511B79	phage major capsid protein	NA
UHGV-0014054_38	eggNOG-mapper	397288.C806_00073	phage major capsid protein, HK97 family	NA
UHGV-0014054_38	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0014054_38	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0014054_38	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0014054_38	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0014054_39	UniRef90	UniRef90_A0A315Y307	Gp6-like head-tail connector protein	NA
UHGV-0014054_39	eggNOG-mapper	536233.CLO_1364	Phage gp6-like head-tail connector protein	NA
UHGV-0014054_39	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0014054_39	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0014054_40	PHROG	phrog_25	head closure Hc1	connector
UHGV-0014054_40	UniRef90	UniRef90_A0A315Y1I6	SPP1 family predicted phage head-tail adaptor	NA
UHGV-0014054_40	eggNOG-mapper	1235799.C818_00437	Phage head-tail joining protein	NA
UHGV-0014054_40	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0014054_40	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0014054_40	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0014054_40	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0014054_41	UniRef90	UniRef90_UPI001CFE163F	HK97 gp10 family phage protein	NA
UHGV-0014054_41	eggNOG-mapper	1226322.HMPREF1545_00119	NA	NA
UHGV-0014054_41	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0014054_41	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0014054_42	eggNOG-mapper	638301.HMPREF0444_1501	NA	NA
UHGV-0014054_42	Structural annotation	PF20765	NA	NA
UHGV-0014054_43	UniRef90	UniRef90_A0A3D3FES6	S-l_SbsC_C domain-containing protein	NA
UHGV-0014054_43	eggNOG-mapper	588581.Cpap_1267	NA	NA
UHGV-0014054_43	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0014054_44	eggNOG-mapper	665956.HMPREF1032_00110	NA	NA
UHGV-0014054_45	PHROG	phrog_19074	NA	unknown function
UHGV-0014054_45	UniRef90	UniRef90_A0A352DNT9	Phage tail tape measure protein	NA
UHGV-0014054_45	eggNOG-mapper	1118059.CAHC01000003_gene808	Phage tail tape measure protein, TP901 family	NA
UHGV-0014054_45	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0014054_45	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0014054_45	COG	COG5283	Phage-related tail protein	NA
UHGV-0014054_45	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0014054_46	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0014054_46	UniRef90	UniRef90_A0A110A7B6	Phage tail protein	NA
UHGV-0014054_46	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0014054_48	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0014054_48	UniRef90	UniRef90_A0A352DNT6	Prophage_tailD1 domain-containing protein	NA
UHGV-0014054_48	eggNOG-mapper	272562.CA_C0063	Prophage endopeptidase tail	NA
UHGV-0014054_48	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0014054_48	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0014054_48	COG	COG4926	Phage-related protein	NA
UHGV-0014054_50	PHROG	phrog_199	holin	lysis
UHGV-0014054_50	UniRef90	UniRef90_UPI0002E39164	phage holin family protein	NA
UHGV-0014054_50	eggNOG-mapper	1437610.BREU_1264	Bacteriophage holin family	NA
UHGV-0014054_50	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0014054_50	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0014054_50	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0014054_51	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0014054_51	PHROG	phrog_894	endolysin	lysis
UHGV-0014054_51	UniRef90	UniRef90_R7GQH8	Peptidase M15	NA
UHGV-0014054_51	eggNOG-mapper	641112.ACOK01000068_gene2796	hydrolase, family 25	NA
UHGV-0014054_51	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0014054_51	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0014054_51	COG	COG3108	NA	NA
UHGV-0014054_51	Structural annotation	PF05951, PF01471, COG3108, COG3409	NA	NA