UHGV-0014456

Genome information

Genome length 38,178 bps

CDS count 64

Completeness 99.90% (high-quality)

geNomad score 0.9716

Prediction confidence Confident

Genome information
Genome ID	UHGV-0014456
vOTU ID	vOTU-010490
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_PheChl_Fiber-Hadza-Nepal_A_16_1650__NODE_384_length_102904_cov_6.599881_1
BioSample	NA
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9716
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	58.48
Jumbo phage	No

Genome content
Genome length	38,178 bps
GC content	28.18%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	64
CDS density	90.55%
Average CDS length	543.23 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0014456_1	KOfam	K14059	int; integrase	NA
UHGV-0014456_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0014456_1	UniRef90	UniRef90_R6HDS7	Phage integrase	NA
UHGV-0014456_1	eggNOG-mapper	935948.KE386495_gene1213	Phage integrase family	NA
UHGV-0014456_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0014456_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0014456_1	Structural annotation	PF00589, PF02920, MF_01808, TIGR02224, COG4974, COG3422	NA	NA
UHGV-0014456_2	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0014456_2	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0014456_2	UniRef90	UniRef90_R5YSE6	Peptidase_S24 domain-containing protein	NA
UHGV-0014456_2	eggNOG-mapper	394503.Ccel_3317	Peptidase S24-like	NA
UHGV-0014456_2	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0014456_2	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0014456_2	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, NF010465, COG1974, COG1476	NA	NA
UHGV-0014456_3	UniRef90	UniRef90_R5ZN14	HTH_8 domain-containing protein	NA
UHGV-0014456_3	eggNOG-mapper	431943.CKL_2015	NA	NA
UHGV-0014456_3	Structural annotation	PF05339, NF007271, COG3655	NA	NA
UHGV-0014456_4	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0014456_4	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0014456_4	UniRef90	UniRef90_A0A1H8KVS3	Anti-repressor protein	NA
UHGV-0014456_4	eggNOG-mapper	663952.SDD27957_09340	AntA/AntB antirepressor	NA
UHGV-0014456_4	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0014456_4	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0014456_4	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0014456_4	Structural annotation	PF03374, PF02498, TIGR02681, COG3617, COG3645	NA	NA
UHGV-0014456_5	Structural annotation	PF21531, NF033787	NA	NA
UHGV-0014456_10	PHROG	phrog_7566	NA	unknown function
UHGV-0014456_10	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0014456_11	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-0014456_11	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0014456_11	UniRef90	UniRef90_UPI0011599948	helix-turn-helix domain-containing protein	NA
UHGV-0014456_11	eggNOG-mapper	218284.CCDN010000001_gene839	Helix-turn-helix domain	NA
UHGV-0014456_11	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0014456_11	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0014456_11	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0014456_11	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0014456_11	Structural annotation	PF13730, NF040939, COG3355	NA	NA
UHGV-0014456_12	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0014456_12	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0014456_12	UniRef90	UniRef90_R5ZPV6	DNA helicase	NA
UHGV-0014456_12	eggNOG-mapper	289376.THEYE_A0337	Participates in initiation and elongation during chromosome replication	NA
UHGV-0014456_12	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0014456_12	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0014456_12	COG	COG0305	Replicative DNA helicase	NA
UHGV-0014456_12	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0014456_16	Structural annotation	PF09871, TIGR00739	NA	NA
UHGV-0014456_17	PHROG	phrog_98	NA	unknown function
UHGV-0014456_17	UniRef90	UniRef90_A0A0X8JTB6	YopX domain-containing protein	NA
UHGV-0014456_17	eggNOG-mapper	1220589.CD32_00355	YopX protein	NA
UHGV-0014456_17	Pfam	PF09643	YopX protein	YopX
UHGV-0014456_17	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0014456_17	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0014456_29	PHROG	phrog_6716	NA	unknown function
UHGV-0014456_32	Structural annotation	PF07374, MF_00674, TIGR02950, COG2739	NA	NA
UHGV-0014456_35	PHROG	phrog_1066	NA	unknown function
UHGV-0014456_35	eggNOG-mapper	1094508.Tsac_2428	NA	NA
UHGV-0014456_35	Structural annotation	PF05119, TIGR01558	NA	NA
UHGV-0014456_36	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0014456_36	UniRef90	UniRef90_A0A1B1YAC1	Terminase	NA
UHGV-0014456_36	eggNOG-mapper	1094508.Tsac_2427	Phage Terminase	NA
UHGV-0014456_36	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0014456_36	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0014456_36	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0014456_36	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0014456_37	PHROG	phrog_12	portal protein	head and packaging
UHGV-0014456_37	UniRef90	UniRef90_W9EA43	Phage portal protein, HK97 family	NA
UHGV-0014456_37	eggNOG-mapper	1094508.Tsac_2426	Portal protein	NA
UHGV-0014456_37	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0014456_37	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0014456_37	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0014456_38	KOfam	K06904	NA	NA
UHGV-0014456_38	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0014456_38	UniRef90	UniRef90_A0A2N2DQ29	HK97 family phage prohead protease	NA
UHGV-0014456_38	eggNOG-mapper	1278311.AUAL01000001_gene29	Phage prohead protease, HK97 family	NA
UHGV-0014456_38	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0014456_38	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0014456_38	COG	COG3740	Phage head maturation protease	NA
UHGV-0014456_38	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0014456_39	PHROG	phrog_10	major head protein	head and packaging
UHGV-0014456_39	UniRef90	UniRef90_A0A1W2AS24	Phage major capsid protein, HK97 family	NA
UHGV-0014456_39	eggNOG-mapper	293826.Amet_2414	Phage capsid family	NA
UHGV-0014456_39	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0014456_39	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0014456_39	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0014456_40	PHROG	phrog_5223	neck protein	connector
UHGV-0014456_40	eggNOG-mapper	1382358.JHVN01000024_gene1709	NA	NA
UHGV-0014456_41	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0014456_41	eggNOG-mapper	386043.lwe1228	head-tail adaptor	NA
UHGV-0014456_41	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0014456_41	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0014456_41	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0014456_42	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0014456_42	UniRef90	UniRef90_A0A559U366	Bacteriophage HK97-gp10 putative tail-component	NA
UHGV-0014456_42	eggNOG-mapper	1121105.ATXL01000027_gene749	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0014456_42	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0014456_42	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0014456_43	eggNOG-mapper	742740.HMPREF9474_01208	NA	NA
UHGV-0014456_43	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-0014456_44	PHROG	phrog_88	major tail protein	tail
UHGV-0014456_44	UniRef90	UniRef90_A0A4R3Z8N6	Phi13 family phage major tail protein	NA
UHGV-0014456_44	eggNOG-mapper	552396.HMPREF0863_01441	phage major tail protein, phi13 family	NA
UHGV-0014456_44	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0014456_44	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0014456_45	PHROG	phrog_709	NA	unknown function
UHGV-0014456_45	Structural annotation	PF11836	NA	NA
UHGV-0014456_46	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0014456_46	UniRef90	UniRef90_UPI0012B073A8	phage tail tape measure protein	NA
UHGV-0014456_46	eggNOG-mapper	665956.HMPREF1032_00108	Phage tail tape measure protein, TP901 family	NA
UHGV-0014456_46	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0014456_46	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0014456_47	PHROG	phrog_5218	NA	unknown function
UHGV-0014456_47	eggNOG-mapper	665956.HMPREF1032_00108	Phage tail tape measure protein, TP901 family	NA
UHGV-0014456_47	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0014456_47	Structural annotation	COG5280	NA	NA
UHGV-0014456_48	eggNOG-mapper	1232447.BAHW02000014_gene818	NA	NA
UHGV-0014456_48	Structural annotation	COG3758	NA	NA
UHGV-0014456_49	UniRef90	UniRef90_A0A552V736	CopG family transcriptional regulator	NA
UHGV-0014456_49	eggNOG-mapper	1105031.HMPREF1141_1146	NA	NA
UHGV-0014456_49	Structural annotation	PF01402, NF041793, COG4710	NA	NA
UHGV-0014456_51	PHROG	phrog_15609	NA	unknown function
UHGV-0014456_51	UniRef90	UniRef90_UPI000CF907AA	NA	NA
UHGV-0014456_51	eggNOG-mapper	1262449.CP6013_1921	NA	NA
UHGV-0014456_51	Pfam	PF11300	NA	DUF3102
UHGV-0014456_51	COG	COG0188	DNA gyrase/topoisomerase IV, subunit A	NA
UHGV-0014456_51	Structural annotation	PF11300, NF038070	NA	NA
UHGV-0014456_52	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0014456_52	Structural annotation	PF10552	NA	NA
UHGV-0014456_53	PHROG	phrog_13564	minor tail protein	tail
UHGV-0014456_53	UniRef90	UniRef90_A0A7G9T4R1	Phage baseplate protein	NA
UHGV-0014456_53	eggNOG-mapper	397287.C807_03967	NA	NA
UHGV-0014456_53	Pfam	PF16774	Distal tail protein, N-terminal domain	Dit_N
UHGV-0014456_53	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0014456_54	UniRef90	UniRef90_A0A1Q6K3Z9	Ricin B-type lectin domain-containing protein	NA
UHGV-0014456_54	Structural annotation	PF14594, NF033848, COG4926	NA	NA
UHGV-0014456_57	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-0014456_57	Structural annotation	TIGR03711	NA	NA
UHGV-0014456_59	UniRef90	UniRef90_R7F968	Peptidoglycan-binding domain 1 protein	NA
UHGV-0014456_59	eggNOG-mapper	717606.PaecuDRAFT_1762	Papain-like cysteine protease AvrRpt2	NA
UHGV-0014456_59	Pfam	PF13529	Peptidase_C39 like family	Peptidase_C39_2
UHGV-0014456_59	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0014456_59	COG	COG0768	Cell division protein FtsI, peptidoglycan transpeptidase (Penicillin-binding protein 2)	NA
UHGV-0014456_59	Structural annotation	PF03412, PF08239, NF040678, COG3807, COG3271	NA	NA
UHGV-0014456_61	PHROG	phrog_9659	NA	unknown function
UHGV-0014456_63	UniRef90	UniRef90_R6I264	HTH cro/C1-type domain-containing protein	NA
UHGV-0014456_63	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0014456_63	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0014456_63	Structural annotation	PF01381, NF010465, COG1476	NA	NA