UHGV-0014495

Genome information

Genome length 40,487 bps

CDS count 40

Completeness 89.63% (medium-quality)

geNomad score 0.9388

Prediction confidence Confident

Genome information
Genome ID	UHGV-0014495
vOTU ID	vOTU-016867
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Nepal_MoBio_Fiber-Hadza-Nepal_D_7_CHE0004BZ__NODE_1219_length_52868_cov_7.021576_1
BioSample	NA
Country	Nepal
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	89.63% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9388
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.86
Jumbo phage	No

Genome content
Genome length	40,487 bps
GC content	31.30%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	40
CDS density	90.00%
Average CDS length	914.85 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0014495_3	COG	COG2844	UTP:GlnB (protein PII) uridylyltransferase	NA
UHGV-0014495_4	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0014495_4	PHROG	phrog_216	integrase	integration and excision
UHGV-0014495_4	UniRef90	UniRef90_A0A316NKR0	Site-specific integrase	NA
UHGV-0014495_4	eggNOG-mapper	1243664.CAVL020000054_gene3041	Integrase	NA
UHGV-0014495_4	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0014495_4	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0014495_4	Structural annotation	PF00589, MF_02055, NF040815, COG4973	NA	NA
UHGV-0014495_5	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0014495_5	PHROG	phrog_5867	endolysin	lysis
UHGV-0014495_5	UniRef90	UniRef90_A0A292SUJ5	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0014495_5	eggNOG-mapper	1255043.TVNIR_1739	Chitinase class I	NA
UHGV-0014495_5	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0014495_5	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0014495_5	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0014495_7	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0014495_7	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0014495_7	UniRef90	UniRef90_A0A292SUF1	PBSX family phage terminase large subunit	NA
UHGV-0014495_7	eggNOG-mapper	1267535.KB906767_gene2463	phage Terminase large subunit	NA
UHGV-0014495_7	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0014495_7	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0014495_7	COG	COG1783	Phage terminase large subunit	NA
UHGV-0014495_7	Structural annotation	PF04466, PF17289, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0014495_8	PHROG	phrog_1863	NA	unknown function
UHGV-0014495_8	UniRef90	UniRef90_A0A2K9NYV1	Holin	NA
UHGV-0014495_8	eggNOG-mapper	428125.CLOLEP_01781	NA	NA
UHGV-0014495_9	PHROG	phrog_1158	tail assembly chaperone	tail
UHGV-0014495_9	UniRef90	UniRef90_A0A843HT70	NA	NA
UHGV-0014495_9	Pfam	PF07087	NA	DUF1353
UHGV-0014495_9	Structural annotation	PF07087	NA	NA
UHGV-0014495_15	Structural annotation	PF11039, MF_02210, NF008072, COG1247	NA	NA
UHGV-0014495_16	Structural annotation	PF11134, MF_00923, NF000022, COG4257	NA	NA
UHGV-0014495_17	UniRef90	UniRef90_UPI0004801501	NA	NA
UHGV-0014495_17	eggNOG-mapper	1410616.JHXE01000020_gene2702	NA	NA
UHGV-0014495_17	Pfam	PF12686	NA	DUF3800
UHGV-0014495_18	Structural annotation	PF20387	NA	NA
UHGV-0014495_20	PHROG	phrog_24894	NA	unknown function
UHGV-0014495_20	Structural annotation	COG4288	NA	NA
UHGV-0014495_21	PHROG	phrog_267	major head protein	head and packaging
UHGV-0014495_21	UniRef90	UniRef90_UPI000BA5E4E9	P22 coat protein - protein 5 domain protein	NA
UHGV-0014495_21	eggNOG-mapper	632518.Calow_0833	P22 coat protein-protein 5 domain protein	NA
UHGV-0014495_21	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0014495_24	PHROG	phrog_332	head-tail adaptor	connector
UHGV-0014495_24	UniRef90	UniRef90_K2EAN5	Portal protein	NA
UHGV-0014495_24	Structural annotation	PF12236, MF_04120, TIGR01538, COG4695	NA	NA
UHGV-0014495_26	Structural annotation	PF17574	NA	NA
UHGV-0014495_28	eggNOG-mapper	857087.Metme_1985	NA	NA
UHGV-0014495_28	Pfam	PF21781	NA	DUF6876
UHGV-0014495_28	Structural annotation	PF21781	NA	NA
UHGV-0014495_29	PHROG	phrog_22302	NA	unknown function
UHGV-0014495_29	eggNOG-mapper	1203606.HMPREF1526_03123	Putative amidoligase enzyme	NA
UHGV-0014495_29	Pfam	PF12224	Putative amidoligase enzyme	Amidoligase_2
UHGV-0014495_29	Structural annotation	PF12224, MF_01609, NF010042, COG2170	NA	NA
UHGV-0014495_30	UniRef90	UniRef90_A0A347VSW6	Glutamine amidotransferase type-2 domain-containing protein	NA
UHGV-0014495_30	COG	COG0449	Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains	NA
UHGV-0014495_30	Structural annotation	PF13230, MF_01931, TIGR01134, COG0121	NA	NA
UHGV-0014495_32	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0014495_32	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0014495_32	UniRef90	UniRef90_A0A292SUM5	Peptidase_S24 domain-containing protein	NA
UHGV-0014495_32	eggNOG-mapper	644076.SCH4B_1728	transcriptional regulator	NA
UHGV-0014495_32	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0014495_32	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0014495_32	Structural annotation	PF00717, PF20432, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0014495_34	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0014495_34	UniRef90	UniRef90_A0A292SUI4	YqaJ domain-containing protein	NA
UHGV-0014495_34	eggNOG-mapper	1150474.JQJI01000006_gene830	YqaJ-like viral recombinase domain	NA
UHGV-0014495_34	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0014495_34	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0014495_34	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0014495_34	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0014495_35	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0014495_35	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0014495_35	UniRef90	UniRef90_A0A292SUJ4	Recombinase RecT	NA
UHGV-0014495_35	eggNOG-mapper	391009.Tmel_1472	RecT family	NA
UHGV-0014495_35	Pfam	PF03837	RecT family	RecT
UHGV-0014495_35	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0014495_35	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0014495_35	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0014495_36	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0014495_37	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0014495_37	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0014495_37	UniRef90	UniRef90_A0A292SUW2	DNA helicase	NA
UHGV-0014495_37	eggNOG-mapper	273068.TTE2774	Participates in initiation and elongation during chromosome replication	NA
UHGV-0014495_37	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0014495_37	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0014495_37	COG	COG0305	Replicative DNA helicase	NA
UHGV-0014495_37	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0014495_39	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0014495_39	COG	COG2452	Predicted site-specific integrase-resolvase	NA
UHGV-0014495_40	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0014495_40	PHROG	phrog_1	integrase	integration and excision
UHGV-0014495_40	UniRef90	UniRef90_A0A843HLZ3	Site-specific integrase	NA
UHGV-0014495_40	eggNOG-mapper	1379858.N508_01106	Phage integrase family	NA
UHGV-0014495_40	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0014495_40	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0014495_40	Structural annotation	PF00589, PF20172, MF_01808, TIGR02224, COG4974	NA	NA