UHGV-0014567

Genome information

Genome length 40,093 bps

CDS count 50

Completeness 91.13% (high-quality)

geNomad score 0.9813

Prediction confidence Confident

Genome information
Genome ID	UHGV-0014567
vOTU ID	vOTU-010498
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-A-D_D_21_1577__NODE_2296_length_40093_cov_25.834066
BioSample	SAMEA4765862
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	91.13% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	5
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9813
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	22.34
Jumbo phage	No

Genome content
Genome length	40,093 bps
GC content	57.59%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	94.08%
Average CDS length	759.66 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0014567_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0014567_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0014567_1	UniRef90	UniRef90_A0A1Y4W9M2	Recombinase family protein	NA
UHGV-0014567_1	eggNOG-mapper	445972.ANACOL_00133	Resolvase, N terminal domain	NA
UHGV-0014567_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0014567_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-0014567_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0014567_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0014567_1	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-0014567_2	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0014567_2	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0014567_2	UniRef90	UniRef90_R7QUM8	DNA-binding helix-turn-helix protein	NA
UHGV-0014567_2	eggNOG-mapper	411470.RUMGNA_00189	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0014567_2	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0014567_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0014567_2	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0014567_4	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0014567_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0014567_4	UniRef90	UniRef90_A0A8E3SLX4	Helix-turn-helix transcriptional regulator	NA
UHGV-0014567_4	eggNOG-mapper	748224.HMPREF9436_01444	NA	NA
UHGV-0014567_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0014567_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0014567_4	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0014567_7	PHROG	phrog_7566	NA	unknown function
UHGV-0014567_7	UniRef90	UniRef90_A0A8D9UHC0	Recombination enhancement function protein nuclease	NA
UHGV-0014567_7	eggNOG-mapper	1007096.BAGW01000031_gene114	NA	NA
UHGV-0014567_11	eggNOG-mapper	1226322.HMPREF1545_00300	NA	NA
UHGV-0014567_12	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0014567_12	UniRef90	UniRef90_A0A3E2T6B6	NA	NA
UHGV-0014567_12	eggNOG-mapper	155864.EDL933_1712	NA	NA
UHGV-0014567_12	Pfam	PF14359	NA	DUF4406
UHGV-0014567_12	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0014567_12	Structural annotation	PF14359, MF_03036, COG3613	NA	NA
UHGV-0014567_13	UniRef90	UniRef90_UPI0008494214	NA	NA
UHGV-0014567_13	Pfam	PF04448	NA	DUF551
UHGV-0014567_14	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0014567_14	PHROG	phrog_5696	NA	unknown function
UHGV-0014567_14	UniRef90	UniRef90_R6LQQ9	N6_Mtase domain-containing protein	NA
UHGV-0014567_14	eggNOG-mapper	445972.ANACOL_00159	N-6 DNA Methylase	NA
UHGV-0014567_14	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0014567_14	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0014567_14	Structural annotation	PF05185, TIGR00497, COG0286	NA	NA
UHGV-0014567_15	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0014567_15	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0014567_15	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0014567_15	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0014567_17	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0014567_17	PHROG	phrog_23224	DNA methyltransferase	other
UHGV-0014567_17	UniRef90	UniRef90_A0A0F9N708	N6_N4_Mtase domain-containing protein	NA
UHGV-0014567_17	eggNOG-mapper	981335.G4W934_9CAUD	N-methyltransferase activity	NA
UHGV-0014567_17	PADLOC	MTase_II_00172	Type II methyltransferase	RM
UHGV-0014567_17	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0014567_17	Structural annotation	PF01555, NF010253, COG0863	NA	NA
UHGV-0014567_18	UniRef90	UniRef90_A0A098GES5	Putative phage associated protein	NA
UHGV-0014567_20	PHROG	phrog_954	DNA methyltransferase	other
UHGV-0014567_20	UniRef90	UniRef90_A0A810Q0N4	Methyltransferase	NA
UHGV-0014567_20	eggNOG-mapper	1280698.AUJS01000007_gene1028	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA	NA
UHGV-0014567_20	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0014567_20	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-0014567_20	COG	COG1092	23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI	NA
UHGV-0014567_20	Structural annotation	PF05148, MF_03044, NF033398, COG1041	NA	NA
UHGV-0014567_22	PHROG	phrog_38832	NA	unknown function
UHGV-0014567_24	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0014567_24	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0014567_24	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0014567_24	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0014567_24	Structural annotation	PF14354, TIGR03655, COG4888	NA	NA
UHGV-0014567_26	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0014567_26	UniRef90	UniRef90_A0A4U9RLZ8	NA	NA
UHGV-0014567_26	eggNOG-mapper	293826.Amet_2596	NA	NA
UHGV-0014567_26	Structural annotation	PF12643, MF_01020, TIGR03188	NA	NA
UHGV-0014567_27	PHROG	phrog_1233	NA	unknown function
UHGV-0014567_27	eggNOG-mapper	445972.ANACOL_01876	NA	NA
UHGV-0014567_31	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0014567_31	eggNOG-mapper	1226322.HMPREF1545_03841	NA	NA
UHGV-0014567_31	Structural annotation	PF01446, NF041486	NA	NA
UHGV-0014567_33	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0014567_33	eggNOG-mapper	1226322.HMPREF1545_03842	DNA-packaging protein gp3	NA
UHGV-0014567_33	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0014567_33	Structural annotation	PF16677	NA	NA
UHGV-0014567_34	PHROG	phrog_12105	NA	unknown function
UHGV-0014567_34	eggNOG-mapper	1226322.HMPREF1545_03850	NA	NA
UHGV-0014567_37	PHROG	phrog_1863	NA	unknown function
UHGV-0014567_37	eggNOG-mapper	665956.HMPREF1032_03922	NA	NA
UHGV-0014567_38	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0014567_38	PHROG	phrog_435	endolysin	lysis
UHGV-0014567_38	UniRef90	UniRef90_A0A810PUG7	SPOR domain-containing protein	NA
UHGV-0014567_38	eggNOG-mapper	1410670.JHXF01000007_gene612	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0014567_38	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0014567_38	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0014567_38	Structural annotation	PF01520, PF01471, MF_00562, TIGR02883, COG0860, COG3409	NA	NA
UHGV-0014567_39	Structural annotation	PF09682, TIGR01673	NA	NA
UHGV-0014567_40	PHROG	phrog_21357	endolysin	lysis
UHGV-0014567_40	UniRef90	UniRef90_A0A6I2R6Q1	CHAP domain-containing protein	NA
UHGV-0014567_40	eggNOG-mapper	97139.C824_00684	lysozyme activity	NA
UHGV-0014567_40	Pfam	PF05257	CHAP domain	CHAP
UHGV-0014567_40	COG	COG1388	LysM repeat	NA
UHGV-0014567_40	Structural annotation	PF10030, TIGR02594, COG4322	NA	NA
UHGV-0014567_42	PHROG	phrog_35275	NA	unknown function
UHGV-0014567_42	eggNOG-mapper	1226322.HMPREF1545_03846	NA	NA
UHGV-0014567_43	PHROG	phrog_24113	NA	unknown function
UHGV-0014567_43	eggNOG-mapper	1226322.HMPREF1545_03847	NA	NA
UHGV-0014567_43	Structural annotation	PF11133, COG5471	NA	NA
UHGV-0014567_44	PHROG	phrog_371	major head protein	head and packaging
UHGV-0014567_44	UniRef90	UniRef90_A0A8F2JBL2	Mu-like prophage major head subunit gpT family protein	NA
UHGV-0014567_44	eggNOG-mapper	1226322.HMPREF1545_03848	NA	NA
UHGV-0014567_44	Pfam	PF10124	Mu-like prophage major head subunit gpT	Mu-like_gpT
UHGV-0014567_44	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0014567_45	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0014567_45	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0014567_45	UniRef90	UniRef90_UPI001105ADB4	PBSX family phage terminase large subunit	NA
UHGV-0014567_45	eggNOG-mapper	1226322.HMPREF1545_03843	phage Terminase large subunit	NA
UHGV-0014567_45	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0014567_45	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0014567_45	COG	COG1783	Phage terminase large subunit	NA
UHGV-0014567_45	Structural annotation	PF04466, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0014567_47	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-0014567_47	eggNOG-mapper	1519439.JPJG01000060_gene1903	NA	NA
UHGV-0014567_47	Structural annotation	PF11134, TIGR03300, NF038126, COG1520	NA	NA
UHGV-0014567_48	PHROG	phrog_156	portal protein	head and packaging
UHGV-0014567_48	eggNOG-mapper	1519439.JPJG01000060_gene1886	NA	NA
UHGV-0014567_48	Structural annotation	PF12236, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0014567_49	eggNOG-mapper	1519439.JPJG01000060_gene1904	NA	NA
UHGV-0014567_50	PHROG	phrog_13543	NA	unknown function
UHGV-0014567_50	UniRef90	UniRef90_U2SNH2	LPD23 domain-containing protein	NA
UHGV-0014567_50	eggNOG-mapper	1226322.HMPREF1545_00787	NA	NA
UHGV-0014567_50	Pfam	PF18838	Large polyvalent protein associated domain 23	LPD23