UHGV-0014701

Genome information

vOTU vOTU-021978

Genome length 31,414 bps

CDS count 53

Completeness 78.99% (medium-quality)

geNomad score 0.9820

Prediction confidence Confident

Genome information
Genome ID	UHGV-0014701
vOTU ID	vOTU-021978
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Pilot_MoBio_Fiber_I_11_1003__NODE_3197_length_39924_cov_15.603709_1
BioSample	SAMN20031487
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	78.99% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9820
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	50.83
Jumbo phage	No

Genome content
Genome length	31,414 bps
GC content	51.04%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	93.73%
Average CDS length	562.36 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0014701_2	PHROG	phrog_25567	NA	unknown function
UHGV-0014701_2	eggNOG-mapper	1235798.C817_04600	NA	NA
UHGV-0014701_2	Structural annotation	NF040522, COG2944	NA	NA
UHGV-0014701_3	eggNOG-mapper	742738.HMPREF9460_00886	NA	NA
UHGV-0014701_3	Pfam	PF08792	A2L zinc ribbon domain	A2L_zn_ribbon
UHGV-0014701_3	Structural annotation	TIGR03826	NA	NA
UHGV-0014701_4	PHROG	phrog_199	holin	lysis
UHGV-0014701_4	UniRef90	UniRef90_A0A2V2FS45	Holin	NA
UHGV-0014701_4	eggNOG-mapper	1195236.CTER_1371	toxin secretion phage lysis holin	NA
UHGV-0014701_4	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0014701_4	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0014701_4	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0014701_4	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0014701_5	KOfam	K13277	epr; minor extracellular protease Epr [EC:3.4.21.-]	NA
UHGV-0014701_5	PHROG	phrog_3677	protease	other
UHGV-0014701_5	UniRef90	UniRef90_A0A2N0ZN02	Peptidase_S8 domain-containing protein	NA
UHGV-0014701_5	eggNOG-mapper	333138.LQ50_00310	Belongs to the peptidase S8 family	NA
UHGV-0014701_5	PADLOC	subtilase	NA	NA
UHGV-0014701_5	Pfam	PF00082	Subtilase family	Peptidase_S8
UHGV-0014701_5	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0014701_5	COG	COG1404	Serine protease, subtilisin family	NA
UHGV-0014701_5	Structural annotation	PF00082, PF01471, PF00877, TIGR03921, NF033743, COG1404	NA	NA
UHGV-0014701_6	KOfam	K18454	deaA; chitin disaccharide deacetylase [EC:3.5.1.105]	NA
UHGV-0014701_6	PHROG	phrog_27545	NA	unknown function
UHGV-0014701_6	UniRef90	UniRef90_A0A1C5VT90	Chitinase A1	NA
UHGV-0014701_6	eggNOG-mapper	994573.T472_0212005	NA	NA
UHGV-0014701_6	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0014701_6	Structural annotation	PF14600	NA	NA
UHGV-0014701_8	Structural annotation	PF21722	NA	NA
UHGV-0014701_9	PHROG	phrog_9534	head protein	head and packaging
UHGV-0014701_9	eggNOG-mapper	748224.HMPREF9436_00702	COG NOG18825 non supervised orthologous group	NA
UHGV-0014701_10	PHROG	phrog_538	minor tail protein	tail
UHGV-0014701_10	UniRef90	UniRef90_UPI0011064D4D	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0014701_10	eggNOG-mapper	748224.HMPREF9436_03324	NA	NA
UHGV-0014701_10	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0014701_10	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0014701_11	PHROG	phrog_36410	NA	unknown function
UHGV-0014701_11	UniRef90	UniRef90_A0A564T4N7	Phage tail protein	NA
UHGV-0014701_11	eggNOG-mapper	748224.HMPREF9436_00700	Phage tail protein	NA
UHGV-0014701_11	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0014701_12	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0014701_12	eggNOG-mapper	536233.CLO_1577	tape measure	NA
UHGV-0014701_12	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0014701_14	PHROG	phrog_18646	NA	unknown function
UHGV-0014701_14	UniRef90	UniRef90_B6CXF0	Peptidase-colicin	NA
UHGV-0014701_15	PHROG	phrog_885	major tail protein	tail
UHGV-0014701_15	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-0014701_15	eggNOG-mapper	1111121.HMPREF1247_0789	NA	NA
UHGV-0014701_15	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0014701_16	PHROG	phrog_17405	head protein	head and packaging
UHGV-0014701_16	UniRef90	UniRef90_A0A415JI88	NA	NA
UHGV-0014701_16	Structural annotation	PF11367	NA	NA
UHGV-0014701_17	PHROG	phrog_17977	NA	unknown function
UHGV-0014701_17	UniRef90	UniRef90_A0A285PT57	Phage head-tail joining protein	NA
UHGV-0014701_17	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0014701_20	PHROG	phrog_267	major head protein	head and packaging
UHGV-0014701_20	UniRef90	UniRef90_F8UBM2	p22 coat protein	NA
UHGV-0014701_20	eggNOG-mapper	673376.F2VHW8_9CAUD	viral capsid	NA
UHGV-0014701_20	Pfam	PF11651	P22 coat protein - gene protein 5	P22_CoatProtein
UHGV-0014701_20	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0014701_21	UniRef90	UniRef90_A0A072YE30	Scaffolding protein	NA
UHGV-0014701_21	Structural annotation	PF06810	NA	NA
UHGV-0014701_22	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0014701_22	UniRef90	UniRef90_A0A7X5E1T2	HK97 gp10 family phage protein	NA
UHGV-0014701_22	eggNOG-mapper	1280685.AUKC01000004_gene1630	NA	NA
UHGV-0014701_22	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0014701_22	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0014701_22	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0014701_23	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-0014701_23	UniRef90	UniRef90_A0A4D7AUA1	Phage head morphogenesis protein	NA
UHGV-0014701_23	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-0014701_23	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0014701_23	COG	COG2369	NA	NA
UHGV-0014701_23	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0014701_24	PHROG	phrog_64	portal protein	head and packaging
UHGV-0014701_24	UniRef90	UniRef90_UPI0018A8A301	phage portal protein	NA
UHGV-0014701_24	eggNOG-mapper	673376.F2VHW1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0014701_24	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0014701_24	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0014701_25	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0014701_25	PHROG	phrog_10250	NA	unknown function
UHGV-0014701_25	UniRef90	UniRef90_A0A3D3Y0N9	PBSX family phage terminase large subunit	NA
UHGV-0014701_25	eggNOG-mapper	1226322.HMPREF1545_00043	Phage terminase large subunit	NA
UHGV-0014701_25	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0014701_25	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0014701_25	COG	COG1783	Phage terminase large subunit	NA
UHGV-0014701_25	Structural annotation	PF04466, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0014701_26	UniRef90	UniRef90_UPI0009523D83	helix-turn-helix domain containing protein	NA
UHGV-0014701_26	eggNOG-mapper	1226322.HMPREF1545_00042	NA	NA
UHGV-0014701_26	Pfam	PF04218	CENP-B N-terminal DNA-binding domain	CENP-B_N
UHGV-0014701_26	Structural annotation	PF13542	NA	NA
UHGV-0014701_28	PHROG	phrog_8680	NA	unknown function
UHGV-0014701_28	UniRef90	UniRef90_UPI00189ACAD3	NA	NA
UHGV-0014701_28	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-0014701_28	Pfam	PF14386	NA	DUF4417
UHGV-0014701_28	Structural annotation	PF14386	NA	NA
UHGV-0014701_29	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0014701_29	Structural annotation	PF05263, TIGR01636	NA	NA
UHGV-0014701_34	UniRef90	UniRef90_A0A316RKY6	NA	NA
UHGV-0014701_34	Pfam	PF04448	NA	DUF551
UHGV-0014701_35	PHROG	phrog_7704	NA	unknown function
UHGV-0014701_35	UniRef90	UniRef90_A0A316RLR0	NA	NA
UHGV-0014701_35	eggNOG-mapper	1316932.MHH_c17560	NA	NA
UHGV-0014701_35	Pfam	PF04448	NA	DUF551
UHGV-0014701_36	PHROG	phrog_22543	NA	unknown function
UHGV-0014701_37	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0014701_37	UniRef90	UniRef90_A0A412AV49	Restriction alleviation protein, Lar family	NA
UHGV-0014701_37	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0014701_37	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0014701_37	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0014701_39	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0014701_39	UniRef90	UniRef90_A0A2V2FLE3	PAPS_reduct domain-containing protein	NA
UHGV-0014701_39	eggNOG-mapper	1235800.C819_02256	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0014701_39	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0014701_39	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0014701_39	Structural annotation	PF01507, MF_00063, TIGR00434, COG0175	NA	NA
UHGV-0014701_41	PHROG	phrog_3301	pyrophosphatase	other
UHGV-0014701_41	eggNOG-mapper	411459.RUMOBE_01042	Mazg nucleotide pyrophosphohydrolase	NA
UHGV-0014701_41	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0014701_41	Structural annotation	COG1694	NA	NA
UHGV-0014701_43	PHROG	phrog_824	NA	unknown function
UHGV-0014701_43	UniRef90	UniRef90_A0A2V2FQB3	VRR-NUC domain-containing protein	NA
UHGV-0014701_43	eggNOG-mapper	1232452.BAIB02000007_gene1645	VRR_NUC	NA
UHGV-0014701_43	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0014701_44	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0014701_44	UniRef90	UniRef90_A0A8B3R1H0	Phage replication protein	NA
UHGV-0014701_44	eggNOG-mapper	1226322.HMPREF1545_04072	HNH endonuclease	NA
UHGV-0014701_44	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0014701_44	Structural annotation	PF01475, NF006999, COG0735	NA	NA
UHGV-0014701_45	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0014701_45	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0014701_45	UniRef90	UniRef90_A0A2V2FMD6	Single-stranded DNA-binding protein	NA
UHGV-0014701_45	eggNOG-mapper	1042163.BRLA_c031440	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0014701_45	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0014701_45	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0014701_45	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0014701_45	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0014701_45	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0014701_46	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0014701_46	UniRef90	UniRef90_A0A2V2FQC1	HNHc domain-containing protein	NA
UHGV-0014701_46	eggNOG-mapper	445972.ANACOL_01826	HNH nucleases	NA
UHGV-0014701_46	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0014701_47	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0014701_47	UniRef90	UniRef90_UPI000C7BF263	recombination protein NinB	NA
UHGV-0014701_47	eggNOG-mapper	1507.HMPREF0262_00432	NA	NA
UHGV-0014701_47	Structural annotation	PF05772	NA	NA
UHGV-0014701_48	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0014701_48	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-0014701_48	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-0014701_48	Structural annotation	PF04098, TIGR00607, COG4380	NA	NA
UHGV-0014701_49	PHROG	phrog_2205	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0014701_49	UniRef90	UniRef90_UPI00084D812A	host-nuclease inhibitor Gam family protein	NA
UHGV-0014701_49	eggNOG-mapper	445972.ANACOL_03335	Bacteriophage Mu Gam like protein	NA
UHGV-0014701_49	Pfam	PF07352	Bacteriophage Mu Gam like protein	Phage_Mu_Gam
UHGV-0014701_53	PHROG	phrog_4433	NA	unknown function
UHGV-0014701_53	eggNOG-mapper	886882.PPSC2_p0048	regulation of DNA-templated transcription, elongation	NA
UHGV-0014701_53	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0014701_53	Structural annotation	NF007410	NA	NA