UHGV-0014710

Genome information

Genome length 32,327 bps

CDS count 41

Completeness 85.67% (medium-quality)

geNomad score 0.9672

Prediction confidence Confident

Genome information
Genome ID	UHGV-0014710
vOTU ID	vOTU-015230
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_C-REDO_H_8_1596__NODE_732_length_32327_cov_14.815070
BioSample	NA
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	85.67% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9672
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	67.54
Jumbo phage	No

Genome content
Genome length	32,327 bps
GC content	27.67%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	41
CDS density	90.34%
Average CDS length	713.42 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0014710_1	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0014710_1	eggNOG-mapper	536232.CLM_2936	Phage terminase, small subunit	NA
UHGV-0014710_1	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0014710_2	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0014710_2	UniRef90	UniRef90_A0A174DJR6	HNH endonuclease	NA
UHGV-0014710_2	eggNOG-mapper	1391647.AVSV01000039_gene1095	HNH endonuclease	NA
UHGV-0014710_2	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0014710_2	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0014710_2	Structural annotation	PF09889, COG4068	NA	NA
UHGV-0014710_3	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0014710_3	UniRef90	UniRef90_A0A336QB97	NA	NA
UHGV-0014710_3	eggNOG-mapper	1391647.AVSV01000022_gene2550	NA	NA
UHGV-0014710_3	Structural annotation	PF08281, MF_00245, NF001068, COG2739	NA	NA
UHGV-0014710_5	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0014710_5	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0014710_5	UniRef90	UniRef90_A0A386PKT7	Single-stranded DNA-binding protein	NA
UHGV-0014710_5	eggNOG-mapper	1280689.AUJC01000014_gene1707	Single-stranded DNA-binding protein	NA
UHGV-0014710_5	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0014710_5	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0014710_5	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0014710_5	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0014710_5	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0014710_7	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0014710_7	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0014710_7	UniRef90	UniRef90_UPI001ABAB1E8	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0014710_7	eggNOG-mapper	195103.CPF_0942	Endodeoxyribonuclease RusA	NA
UHGV-0014710_7	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0014710_7	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0014710_7	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0014710_8	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0014710_8	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0014710_8	UniRef90	UniRef90_A0A7T0GMR8	DNA helicase	NA
UHGV-0014710_8	eggNOG-mapper	545697.HMPREF0216_03166	DnaB-like helicase N terminal domain	NA
UHGV-0014710_8	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0014710_8	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0014710_8	COG	COG0305	Replicative DNA helicase	NA
UHGV-0014710_8	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0014710_9	PHROG	phrog_19658	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0014710_9	UniRef90	UniRef90_A0A1G9PJ92	Phg_2220_C domain-containing protein	NA
UHGV-0014710_9	eggNOG-mapper	1391647.AVSV01000022_gene2531	DnaD domain protein	NA
UHGV-0014710_9	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0014710_10	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0014710_10	UniRef90	UniRef90_UPI000985D1CB	ERF family protein	NA
UHGV-0014710_10	eggNOG-mapper	386415.NT01CX_2192	ERF superfamily	NA
UHGV-0014710_10	Pfam	PF04404	ERF superfamily	ERF
UHGV-0014710_10	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0014710_13	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0014710_13	UniRef90	UniRef90_A0A5M9N7P5	Siphovirus Gp157 family protein	NA
UHGV-0014710_13	eggNOG-mapper	1121342.AUCO01000012_gene1652	Siphovirus Gp157	NA
UHGV-0014710_13	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0014710_13	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0014710_14	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0014710_14	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0014710_14	UniRef90	UniRef90_A0A7T0D4H6	Phage antirepressor Ant	NA
UHGV-0014710_14	eggNOG-mapper	1567013.A0A0A7RVQ9_9CAUD	AntA/AntB antirepressor	NA
UHGV-0014710_14	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0014710_14	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0014710_14	Structural annotation	PF10552, PF08346, NF008573, COG3561	NA	NA
UHGV-0014710_17	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0014710_17	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0014710_17	UniRef90	UniRef90_A0A336QRN3	Helix-turn-helix domain-containing protein	NA
UHGV-0014710_17	eggNOG-mapper	929506.CbC4_8001	Helix-turn-helix XRE-family like proteins	NA
UHGV-0014710_17	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0014710_17	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0014710_17	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0014710_17	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0014710_18	PHROG	phrog_10934	NA	unknown function
UHGV-0014710_18	eggNOG-mapper	1158607.UAU_05190	NA	NA
UHGV-0014710_21	PHROG	phrog_391	replication initiation O-like	DNA, RNA and nucleotide metabolism
UHGV-0014710_21	UniRef90	UniRef90_A0A6N2YAS5	MarR family protein	NA
UHGV-0014710_21	eggNOG-mapper	632245.CLP_2588	NA	NA
UHGV-0014710_21	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0014710_21	Structural annotation	PF07106, MF_01177, NF040642, COG0640	NA	NA
UHGV-0014710_22	PHROG	phrog_33472	NA	unknown function
UHGV-0014710_23	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0014710_23	PHROG	phrog_435	endolysin	lysis
UHGV-0014710_23	UniRef90	UniRef90_UPI0018A88F77	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0014710_23	eggNOG-mapper	195103.CPF_1753	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0014710_23	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0014710_23	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0014710_23	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0014710_23	Structural annotation	PF01520, PF18342, MF_00417, TIGR02883, COG0860, COG4991	NA	NA
UHGV-0014710_24	PHROG	phrog_9492	NA	unknown function
UHGV-0014710_24	UniRef90	UniRef90_A0A7T0D4K9	Cobalt ABC transporter permease	NA
UHGV-0014710_24	eggNOG-mapper	1391647.AVSV01000022_gene2578	NA	NA
UHGV-0014710_25	PHROG	phrog_1863	NA	unknown function
UHGV-0014710_25	eggNOG-mapper	1499683.CCFF01000014_gene3893	NA	NA
UHGV-0014710_26	UniRef90	UniRef90_A0A7T0D4K2	XkdX family protein	NA
UHGV-0014710_26	NCBIFam	TIGR01669.1	XkdX family protein	NA
UHGV-0014710_27	PHROG	phrog_16573	NA	unknown function
UHGV-0014710_27	UniRef90	UniRef90_A0A7T0GLA2	BppU family phage baseplate upper protein	NA
UHGV-0014710_27	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0014710_27	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0014710_27	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-0014710_28	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0014710_28	UniRef90	UniRef90_A0A7T0GMP6	Prophage_tail domain-containing protein	NA
UHGV-0014710_28	eggNOG-mapper	999411.HMPREF1092_03309	Prophage endopeptidase tail	NA
UHGV-0014710_28	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0014710_28	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0014710_28	COG	COG4926	Phage-related protein	NA
UHGV-0014710_28	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0014710_29	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0014710_29	UniRef90	UniRef90_A0A7T0GMH4	Phage tail protein	NA
UHGV-0014710_29	eggNOG-mapper	1443125.Z962_07965	phage tail	NA
UHGV-0014710_29	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0014710_29	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0014710_29	COG	COG4722	Phage-related protein YomH	NA
UHGV-0014710_29	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0014710_30	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0014710_30	UniRef90	UniRef90_A0A7T0D4M4	Phage tail tape measure protein	NA
UHGV-0014710_30	eggNOG-mapper	946235.CAER01000065_gene2435	Phage tail tape measure protein	NA
UHGV-0014710_30	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0014710_30	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0014710_30	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0014710_30	Structural annotation	PF10145, PF05546, TIGR01760, COG5280	NA	NA
UHGV-0014710_31	PHROG	phrog_187	head-tail adaptor	connector
UHGV-0014710_31	eggNOG-mapper	1234664.AMRO01000024_gene1815	NA	NA
UHGV-0014710_31	Structural annotation	PF06896	NA	NA
UHGV-0014710_32	KOfam	K20697	GNBP1; gram-negative bacteria-binding protein 1	NA
UHGV-0014710_32	UniRef90	UniRef90_A0A7T0GM54	Family 16 glycosylhydrolase	NA
UHGV-0014710_32	eggNOG-mapper	573061.Clocel_2716	family 16	NA
UHGV-0014710_32	Pfam	PF00722	Glycosyl hydrolases family 16	Glyco_hydro_16
UHGV-0014710_32	COG	COG2273	Beta-glucanase, GH16 family	NA
UHGV-0014710_33	PHROG	phrog_88	major tail protein	tail
UHGV-0014710_33	UniRef90	UniRef90_A0A7T0D4S8	Phage tail protein	NA
UHGV-0014710_33	eggNOG-mapper	411459.RUMOBE_01728	phage major tail protein, phi13 family	NA
UHGV-0014710_33	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0014710_33	COG	COG5492	NA	NA
UHGV-0014710_33	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0014710_34	PHROG	phrog_78	tail terminator	connector
UHGV-0014710_34	UniRef90	UniRef90_I2E8V8	Gp10	NA
UHGV-0014710_34	eggNOG-mapper	195103.CPF_1580	NA	NA
UHGV-0014710_34	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-0014710_35	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0014710_35	UniRef90	UniRef90_UPI00164C40CD	HK97 gp10 family phage protein	NA
UHGV-0014710_35	eggNOG-mapper	1124578.H0USW9_9CAUD	exonuclease activity	NA
UHGV-0014710_35	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0014710_35	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0014710_35	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-0014710_36	PHROG	phrog_25	head closure Hc1	connector
UHGV-0014710_36	UniRef90	UniRef90_A0A7T0D4U5	Phage head closure protein	NA
UHGV-0014710_36	eggNOG-mapper	195103.CPF_1582	Phage head-tail adaptor	NA
UHGV-0014710_36	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0014710_36	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0014710_36	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0014710_37	UniRef90	UniRef90_A0A7T0D4Q6	Phage gp6-like head-tail connector protein	NA
UHGV-0014710_37	eggNOG-mapper	536232.CLM_1660	Phage gp6-like head-tail connector protein	NA
UHGV-0014710_37	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0014710_37	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0014710_37	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0014710_38	PHROG	phrog_10	major head protein	head and packaging
UHGV-0014710_38	UniRef90	UniRef90_A0A7T0D4L4	Phage major capsid protein	NA
UHGV-0014710_38	eggNOG-mapper	536233.CLO_1424	Phage major capsid protein, HK97 family	NA
UHGV-0014710_38	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0014710_38	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0014710_38	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0014710_38	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0014710_39	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0014710_39	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0014710_39	UniRef90	UniRef90_A0A7T0D4K0	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0014710_39	eggNOG-mapper	1567013.A0A0A7RTN2_9CAUD	Clp protease	NA
UHGV-0014710_39	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0014710_39	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0014710_40	PHROG	phrog_12	portal protein	head and packaging
UHGV-0014710_40	UniRef90	UniRef90_A0A7T0D4M6	Phage portal protein	NA
UHGV-0014710_40	eggNOG-mapper	536232.CLM_1657	Phage portal protein, HK97 family	NA
UHGV-0014710_40	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0014710_40	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0014710_40	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0014710_40	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0014710_41	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0014710_41	UniRef90	UniRef90_A0A7T0D4V3	Terminase large subunit	NA
UHGV-0014710_41	eggNOG-mapper	536232.CLM_1656	Terminase	NA
UHGV-0014710_41	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0014710_41	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0014710_41	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0014710_41	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA