UHGV-0015278

Genome information

Genome length 42,130 bps

CDS count 63

Completeness 92.43% (high-quality)

geNomad score 0.9800

Prediction confidence Confident

Genome information
Genome ID	UHGV-0015278
vOTU ID	vOTU-065384
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-A-D_M_24_1194__NODE_1734_length_42130_cov_7.489929
BioSample	SAMEA4765653
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	92.43% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9800
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.74
Jumbo phage	No

Genome content
Genome length	42,130 bps
GC content	44.47%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	63
CDS density	90.86%
Average CDS length	609.95 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0015278_1	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0015278_1	UniRef90	UniRef90_UPI00164ECEF5	YqaJ viral recombinase family protein	NA
UHGV-0015278_1	eggNOG-mapper	1121866.AUGK01000003_gene1405	YqaJ viral recombinase family	NA
UHGV-0015278_1	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0015278_2	Structural annotation	PF05037, NF005674	NA	NA
UHGV-0015278_3	PHROG	phrog_1485	NA	unknown function
UHGV-0015278_3	UniRef90	UniRef90_UPI00164CE11C	nucleotide modification associated domain-containing protein	NA
UHGV-0015278_3	eggNOG-mapper	1415774.U728_1099	NA	NA
UHGV-0015278_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0015278_3	Pfam	PF07659	Nucleotide modification associated domain 1	DUF1599
UHGV-0015278_4	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0015278_4	PHROG	phrog_12862	NA	unknown function
UHGV-0015278_4	UniRef90	UniRef90_A0A1C6BAK4	Methyltransferase	NA
UHGV-0015278_4	eggNOG-mapper	585394.RHOM_02055	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0015278_4	PADLOC	MTase_II_00037	Type II methyltransferase	RM
UHGV-0015278_4	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0015278_4	COG	COG0863	DNA modification methylase	NA
UHGV-0015278_5	KOfam	K03698	cbf, cbf1; 3'-5' exoribonuclease [EC:3.1.-.-]	NA
UHGV-0015278_5	PHROG	phrog_5889	NA	unknown function
UHGV-0015278_5	UniRef90	UniRef90_A0A1C5MUY3	Predicted HD-superfamily hydrolase	NA
UHGV-0015278_5	eggNOG-mapper	1219626.HMPREF1639_07345	metal-dependent phosphohydrolase, HD sub domain	NA
UHGV-0015278_5	COG	COG3481	3'-5' exoribonuclease YhaM, can participate in 23S rRNA maturation, HD superfamily	NA
UHGV-0015278_5	Structural annotation	PF01966, MF_01427, NF010007, COG3481	NA	NA
UHGV-0015278_6	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0015278_6	UniRef90	UniRef90_R6PFX4	Putative phage reductase	NA
UHGV-0015278_6	eggNOG-mapper	760568.Desku_0566	NA	NA
UHGV-0015278_6	PADLOC	SspD_00001	SspD	SSP
UHGV-0015278_6	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0015278_6	Structural annotation	PF01507, MF_00063, NF006327, COG0175	NA	NA
UHGV-0015278_7	KOfam	K03465	thyX, thy1; thymidylate synthase (FAD) [EC:2.1.1.148]	NA
UHGV-0015278_7	PHROG	phrog_85	thymidylate synthase	DNA, RNA and nucleotide metabolism
UHGV-0015278_7	UniRef90	UniRef90_UPI001A9AFBB0	FAD-dependent thymidylate synthase	NA
UHGV-0015278_7	eggNOG-mapper	1410631.JHWZ01000001_gene1062	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant	NA
UHGV-0015278_7	Pfam	PF02511	Thymidylate synthase complementing protein	Thy1
UHGV-0015278_7	NCBIFam	TIGR02170.1	FAD-dependent thymidylate synthase	NA
UHGV-0015278_7	COG	COG1351	Thymidylate synthase ThyX, FAD-dependent family	NA
UHGV-0015278_7	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-0015278_10	PHROG	phrog_1829	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0015278_10	UniRef90	UniRef90_UPI00164DE9BA	primase C-terminal domain-containing protein	NA
UHGV-0015278_10	eggNOG-mapper	1121866.AUGK01000003_gene1409	Phage plasmid primase, P4 family domain protein	NA
UHGV-0015278_10	Pfam	PF08708	Primase C terminal 1 (PriCT-1)	PriCT_1
UHGV-0015278_10	COG	COG4983	Primase-polymerase (Primpol) domain protein	NA
UHGV-0015278_11	PHROG	phrog_5070	NA	unknown function
UHGV-0015278_11	eggNOG-mapper	1121356.AQUW01000020_gene775	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-0015278_11	Pfam	PF18836	YdcK Beta solenoid repeat	B_solenoid_ydck
UHGV-0015278_11	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-0015278_13	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0015278_13	UniRef90	UniRef90_A0A412AV49	Restriction alleviation protein, Lar family	NA
UHGV-0015278_13	eggNOG-mapper	1235790.C805_00069	Restriction alleviation protein Lar	NA
UHGV-0015278_13	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0015278_13	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0015278_13	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0015278_13	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0015278_15	PHROG	phrog_22543	NA	unknown function
UHGV-0015278_15	UniRef90	UniRef90_UPI001D08B1AD	Lar family restriction alleviation protein	NA
UHGV-0015278_17	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0015278_17	UniRef90	UniRef90_R6E548	Prophage pi1 protein 29	NA
UHGV-0015278_17	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-0015278_18	UniRef90	UniRef90_A0A2V2FJ47	NA	NA
UHGV-0015278_18	Pfam	PF04448	NA	DUF551
UHGV-0015278_21	Structural annotation	PF19885	NA	NA
UHGV-0015278_22	PHROG	phrog_864	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0015278_22	UniRef90	UniRef90_A0A6N3B7J5	SF3 helicase domain-containing protein	NA
UHGV-0015278_22	eggNOG-mapper	657322.FPR_24010	Phage plasmid primase, P4 family	NA
UHGV-0015278_22	Pfam	PF19263	NA	DUF5906
UHGV-0015278_22	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-0015278_22	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-0015278_22	Structural annotation	PF05272, PF02257, NF005477, COG3378	NA	NA
UHGV-0015278_24	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0015278_24	UniRef90	UniRef90_UPI001C012D23	DNA-packaging protein	NA
UHGV-0015278_24	eggNOG-mapper	877421.AUJT01000054_gene66	NA	NA
UHGV-0015278_24	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0015278_24	Structural annotation	PF16677	NA	NA
UHGV-0015278_25	UniRef90	UniRef90_A0A348ZKJ8	NA	NA
UHGV-0015278_25	eggNOG-mapper	877420.ATVW01000001_gene2263	NA	NA
UHGV-0015278_25	Pfam	PF10387	NA	DUF2442
UHGV-0015278_25	Structural annotation	PF10387	NA	NA
UHGV-0015278_27	eggNOG-mapper	1095770.CAHE01000085_gene1290	NA	NA
UHGV-0015278_28	PHROG	phrog_6244	NA	unknown function
UHGV-0015278_28	eggNOG-mapper	1354300.AUQY01000005_gene215	NA	NA
UHGV-0015278_30	PHROG	phrog_12389	NA	unknown function
UHGV-0015278_30	eggNOG-mapper	1511.CLOST_1250	NA	NA
UHGV-0015278_31	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0015278_31	PHROG	phrog_95	integrase	integration and excision
UHGV-0015278_31	UniRef90	UniRef90_UPI00164DD5BB	recombinase family protein	NA
UHGV-0015278_31	eggNOG-mapper	697329.Rumal_3466	resolvase	NA
UHGV-0015278_31	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0015278_31	Pfam	PF07508	Recombinase	Recombinase
UHGV-0015278_31	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0015278_31	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-0015278_32	eggNOG-mapper	1410670.JHXF01000014_gene1980	recombinase activity	NA
UHGV-0015278_32	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0015278_32	Structural annotation	PF02796, PF15653	NA	NA
UHGV-0015278_33	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0015278_33	UniRef90	UniRef90_UPI00164E3A67	phage terminase large subunit	NA
UHGV-0015278_33	eggNOG-mapper	1298920.KI911353_gene2682	TIGRFAM Phage	NA
UHGV-0015278_33	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0015278_33	COG	COG5410	NA	NA
UHGV-0015278_33	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0015278_34	PHROG	phrog_64	portal protein	head and packaging
UHGV-0015278_34	UniRef90	UniRef90_UPI001C02F349	phage portal protein	NA
UHGV-0015278_34	eggNOG-mapper	1123263.AUKY01000015_gene1609	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0015278_34	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0015278_34	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0015278_35	UniRef90	UniRef90_A0A7C7EK05	NA	NA
UHGV-0015278_36	PHROG	phrog_247	major head protein	head and packaging
UHGV-0015278_36	UniRef90	UniRef90_A0A3D0LY55	Coat protein	NA
UHGV-0015278_36	eggNOG-mapper	903814.ELI_3208	NA	NA
UHGV-0015278_36	Pfam	PF20036	Major capsid protein 13-like	Gp13-like
UHGV-0015278_36	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0015278_38	UniRef90	UniRef90_UPI00164E20D5	phage head-tail connector protein	NA
UHGV-0015278_38	eggNOG-mapper	1298920.KI911353_gene2658	NA	NA
UHGV-0015278_38	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0015278_38	Structural annotation	TIGR01560	NA	NA
UHGV-0015278_39	eggNOG-mapper	1121866.AUGK01000003_gene1432	NA	NA
UHGV-0015278_40	eggNOG-mapper	1298920.KI911353_gene2654	NA	NA
UHGV-0015278_41	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0015278_42	PHROG	phrog_158	major tail protein	tail
UHGV-0015278_42	UniRef90	UniRef90_UPI00164D954A	phage tail protein	NA
UHGV-0015278_42	eggNOG-mapper	1232453.BAIF02000058_gene1634	NA	NA
UHGV-0015278_42	Pfam	PF08813	Phage tail tube protein, TTP	Phage_tail_3
UHGV-0015278_42	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0015278_43	UniRef90	UniRef90_UPI00164D364F	NA	NA
UHGV-0015278_43	eggNOG-mapper	469596.HMPREF9488_01311	NA	NA
UHGV-0015278_43	Pfam	PF16478	NA	DUF5055
UHGV-0015278_43	Structural annotation	PF16478	NA	NA
UHGV-0015278_44	eggNOG-mapper	1121333.JMLH01000047_gene1011	NA	NA
UHGV-0015278_45	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0015278_45	eggNOG-mapper	665956.HMPREF1032_00686	phage tail tape measure protein	NA
UHGV-0015278_45	COG	COG5412	Phage-related protein	NA
UHGV-0015278_46	PHROG	phrog_1194	NA	unknown function
UHGV-0015278_46	eggNOG-mapper	665956.HMPREF1032_03056	NA	NA
UHGV-0015278_46	Pfam	PF20458	NA	DUF6711
UHGV-0015278_46	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0015278_47	PHROG	phrog_13879	NA	unknown function
UHGV-0015278_47	eggNOG-mapper	645991.Sgly_0356	NA	NA
UHGV-0015278_47	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0015278_48	PHROG	phrog_18725	NA	unknown function
UHGV-0015278_48	eggNOG-mapper	693746.OBV_18220	NA	NA
UHGV-0015278_50	PHROG	phrog_962	holin	lysis
UHGV-0015278_50	UniRef90	UniRef90_A0A6P1MHI0	Phage holin	NA
UHGV-0015278_50	eggNOG-mapper	936375.HMPREF1152_0014	Bacteriophage holin	NA
UHGV-0015278_50	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0015278_50	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0015278_50	COG	COG5546	NA	NA
UHGV-0015278_50	Structural annotation	COG5546	NA	NA
UHGV-0015278_51	PHROG	phrog_1863	NA	unknown function
UHGV-0015278_51	eggNOG-mapper	693746.OBV_18260	NA	NA
UHGV-0015278_52	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0015278_52	PHROG	phrog_1794	amidase	lysis
UHGV-0015278_52	UniRef90	UniRef90_A0A3D2HTX7	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0015278_52	eggNOG-mapper	1203606.HMPREF1526_01931	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0015278_52	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0015278_52	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0015278_52	Structural annotation	PF01510, PF18342, MF_04111, NF008758, COG3023, COG4991	NA	NA
UHGV-0015278_55	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0015278_55	PHROG	phrog_95	integrase	integration and excision
UHGV-0015278_55	UniRef90	UniRef90_UPI00164E9A6A	recombinase family protein	NA
UHGV-0015278_55	eggNOG-mapper	665956.HMPREF1032_01888	NA	NA
UHGV-0015278_55	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0015278_55	Pfam	PF07508	Recombinase	Recombinase
UHGV-0015278_55	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0015278_55	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0015278_55	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0015278_56	Structural annotation	PF12844, MF_00535, NF007257, COG1476	NA	NA
UHGV-0015278_58	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0015278_58	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0015278_58	UniRef90	UniRef90_A0A6N2R468	Bro-N domain-containing protein	NA
UHGV-0015278_58	eggNOG-mapper	1289596.M1PKL6_9CAUD	BRO family, N-terminal domain	NA
UHGV-0015278_58	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0015278_58	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0015278_58	Structural annotation	PF02498, PF03374, TIGR02681, COG3617	NA	NA
UHGV-0015278_61	KOfam	K03552	hjr; holliday junction resolvase Hjr [EC:3.1.21.10]	NA
UHGV-0015278_61	UniRef90	UniRef90_UPI0018982E6D	Holliday junction resolvase RecU	NA
UHGV-0015278_61	eggNOG-mapper	1232453.BAIF02000010_gene3342	Recombination protein U	NA
UHGV-0015278_61	Pfam	PF01870	Archaeal holliday junction resolvase (hjc)	Hjc
UHGV-0015278_61	Structural annotation	PF03838, MF_01490, NF002581, COG1591	NA	NA
UHGV-0015278_62	KOfam	K18959	uvsW; ATP-dependent DNA helicase UvsW [EC:5.6.2.4]	NA
UHGV-0015278_62	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0015278_62	UniRef90	UniRef90_UPI00164EB154	DEAD/DEAH box helicase family protein	NA
UHGV-0015278_62	eggNOG-mapper	1449050.JNLE01000003_gene3908	Type III restriction protein res subunit	NA
UHGV-0015278_62	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0015278_62	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0015278_62	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0015278_62	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0015278_62	Structural annotation	PF04851, PF16203, MF_01489, TIGR00603, COG1061	NA	NA
UHGV-0015278_63	PHROG	phrog_1252	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0015278_63	eggNOG-mapper	1121866.AUGK01000003_gene1403	DNA replication proofreading	NA
UHGV-0015278_63	COG	COG0417	DNA polymerase B elongation subunit	NA