UHGV-0015292

Genome information

Genome length 31,946 bps

CDS count 44

Completeness 71.11% (medium-quality)

geNomad score 0.9784

Prediction confidence Confident

Genome information
Genome ID	UHGV-0015292
vOTU ID	vOTU-022188
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_A_21_1706__NODE_2304_length_31946_cov_31.508017
BioSample	SAMEA4765986
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	71.11% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9784
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.21
Jumbo phage	No

Genome content
Genome length	31,946 bps
GC content	32.87%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	44
CDS density	89.91%
Average CDS length	655.23 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0015292_1	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0015292_1	PHROG	phrog_3088	amidase	lysis
UHGV-0015292_1	UniRef90	UniRef90_A0A413UF85	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0015292_1	eggNOG-mapper	428125.CLOLEP_01782	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0015292_1	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0015292_1	Pfam	PF08460	Bacterial SH3 domain	SH3_5
UHGV-0015292_1	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0015292_1	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0015292_2	PHROG	phrog_443	holin	lysis
UHGV-0015292_2	UniRef90	UniRef90_A0A2U2ELA1	Membrane protein	NA
UHGV-0015292_2	eggNOG-mapper	476272.RUMHYD_01759	Putative lactococcus lactis phage r1t holin	NA
UHGV-0015292_2	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0015292_2	Structural annotation	PF16945	NA	NA
UHGV-0015292_4	PHROG	phrog_20016	NA	unknown function
UHGV-0015292_4	UniRef90	UniRef90_A0A395WF88	BclA_C domain-containing protein	NA
UHGV-0015292_4	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0015292_4	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0015292_5	UniRef90	UniRef90_A0A8F0WFQ8	Outer capsid protein/viral fiber	NA
UHGV-0015292_5	eggNOG-mapper	476272.RUMHYD_01770	NA	NA
UHGV-0015292_10	PHROG	phrog_2310	NA	unknown function
UHGV-0015292_11	eggNOG-mapper	476272.RUMHYD_00002	NA	NA
UHGV-0015292_11	Structural annotation	PF10651	NA	NA
UHGV-0015292_12	Structural annotation	PF05895, MF_04116, NF010681, COG1361	NA	NA
UHGV-0015292_13	Structural annotation	PF10651, COG5513	NA	NA
UHGV-0015292_14	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0015292_14	eggNOG-mapper	1232446.BAIE02000002_gene836	Phage minor structural protein	NA
UHGV-0015292_14	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0015292_14	COG	COG4926	Phage-related protein	NA
UHGV-0015292_14	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0015292_15	Structural annotation	PF05939, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0015292_16	KOfam	K20282	GCC2; GRIP and coiled-coil domain-containing protein 2	NA
UHGV-0015292_16	PHROG	phrog_13339	tail length tape measure protein	tail
UHGV-0015292_16	UniRef90	UniRef90_A0A395WD11	Phage tail tape measure protein	NA
UHGV-0015292_16	eggNOG-mapper	999425.HMPREF9186_02045	Phage-related minor tail protein	NA
UHGV-0015292_16	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0015292_16	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0015292_16	COG	COG5283	Phage-related tail protein	NA
UHGV-0015292_16	Structural annotation	PF10145, TIGR01760, TIGR02971, COG5280	NA	NA
UHGV-0015292_17	PHROG	phrog_3033	NA	unknown function
UHGV-0015292_18	Structural annotation	PF11836	NA	NA
UHGV-0015292_19	PHROG	phrog_88	major tail protein	tail
UHGV-0015292_19	UniRef90	UniRef90_A0A395WA58	Phage tail protein	NA
UHGV-0015292_19	eggNOG-mapper	1111134.HMPREF1253_0377	Phage major tail protein, phi13 family	NA
UHGV-0015292_19	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0015292_19	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0015292_20	UniRef90	UniRef90_A0A374RUJ8	HK97 gp10 family phage protein	NA
UHGV-0015292_20	eggNOG-mapper	86416.Clopa_0344	NA	NA
UHGV-0015292_20	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0015292_20	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0015292_21	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-0015292_22	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0015292_22	UniRef90	UniRef90_A0A395WC07	Head-tail adaptor protein	NA
UHGV-0015292_22	eggNOG-mapper	588581.Cpap_1270	NA	NA
UHGV-0015292_22	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0015292_23	PHROG	phrog_5223	neck protein	connector
UHGV-0015292_23	UniRef90	UniRef90_A0A374RXD1	DNA-packaging protein	NA
UHGV-0015292_23	Structural annotation	TIGR01560	NA	NA
UHGV-0015292_24	PHROG	phrog_10	major head protein	head and packaging
UHGV-0015292_24	UniRef90	UniRef90_A0A395WF70	Phage major capsid protein	NA
UHGV-0015292_24	eggNOG-mapper	1536774.H70357_10630	Phage capsid family	NA
UHGV-0015292_24	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0015292_24	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0015292_24	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0015292_24	Structural annotation	PF05065, PF19962, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0015292_25	KOfam	K06904	NA	NA
UHGV-0015292_25	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0015292_25	UniRef90	UniRef90_A0A413UET6	HK97 family phage prohead protease	NA
UHGV-0015292_25	eggNOG-mapper	411470.RUMGNA_02064	Caudovirus prohead serine protease	NA
UHGV-0015292_25	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0015292_25	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0015292_25	COG	COG3740	Phage head maturation protease	NA
UHGV-0015292_25	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0015292_26	PHROG	phrog_12	portal protein	head and packaging
UHGV-0015292_26	UniRef90	UniRef90_A0A395W9X2	Phage portal protein	NA
UHGV-0015292_26	eggNOG-mapper	1203606.HMPREF1526_01337	Portal protein	NA
UHGV-0015292_26	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0015292_26	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0015292_26	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0015292_27	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0015292_27	UniRef90	UniRef90_A0A395WD03	Terminase large subunit	NA
UHGV-0015292_27	eggNOG-mapper	411471.SUBVAR_05848	large subunit	NA
UHGV-0015292_27	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0015292_27	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0015292_27	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0015292_27	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0015292_28	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-0015292_28	UniRef90	UniRef90_A0A7C6YMQ8	P27 family phage terminase small subunit	NA
UHGV-0015292_28	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0015292_28	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0015292_28	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0015292_29	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0015292_29	UniRef90	UniRef90_A0A395WA48	HNH endonuclease	NA
UHGV-0015292_29	eggNOG-mapper	1211814.CAPG01000074_gene3460	HNH endonuclease	NA
UHGV-0015292_29	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0015292_29	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0015292_30	UniRef90	UniRef90_A0A806LDM6	HTH cro/C1-type domain-containing protein	NA
UHGV-0015292_30	eggNOG-mapper	1145276.T479_01760	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0015292_30	Structural annotation	PF13560, TIGR02612, COG1396	NA	NA
UHGV-0015292_35	eggNOG-mapper	592031.GCWU000322_00057	NA	NA
UHGV-0015292_37	COG	COG4842	Secreted virulence factor YukE/EsxA, WXG100 family	NA
UHGV-0015292_42	PHROG	phrog_4525	NA	unknown function
UHGV-0015292_43	PHROG	phrog_2316	NA	unknown function
UHGV-0015292_43	UniRef90	UniRef90_A0A3E4YBW5	NA	NA
UHGV-0015292_43	eggNOG-mapper	1280676.AUJO01000024_gene3262	NA	NA
UHGV-0015292_43	Structural annotation	PF16475, MF_00436, NF033216	NA	NA