UHGV-0015801

Genome information

Genome length 53,567 bps

CDS count 94

Completeness 97.00% (high-quality)

geNomad score 0.9672

Prediction confidence Confident

Genome information
Genome ID	UHGV-0015801
vOTU ID	vOTU-010790
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-A-D_L_5_1538__NODE_704_length_53567_cov_5.665377
BioSample	SAMEA4765828
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.00% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9672
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	46.9
Jumbo phage	No

Genome content
Genome length	53,567 bps
GC content	26.79%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	94
CDS density	88.34%
Average CDS length	506.65 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0015801_2	PHROG	phrog_31463	NA	unknown function
UHGV-0015801_2	UniRef90	UniRef90_UPI001160B515	LemA family protein	NA
UHGV-0015801_5	PHROG	phrog_98	NA	unknown function
UHGV-0015801_5	UniRef90	UniRef90_A0A0X8JTB6	YopX domain-containing protein	NA
UHGV-0015801_5	eggNOG-mapper	39103.U5U4M8_9CAUD	YopX protein	NA
UHGV-0015801_5	Pfam	PF09643	YopX protein	YopX
UHGV-0015801_5	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0015801_5	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0015801_8	UniRef90	UniRef90_A0A844U3V8	Leucine-rich repeat protein	NA
UHGV-0015801_8	eggNOG-mapper	563031.HMPREF0666_01114	NA	NA
UHGV-0015801_9	Pfam	PF00560	Leucine Rich Repeat	LRR_1
UHGV-0015801_11	KOfam	K06940	NA	NA
UHGV-0015801_11	PHROG	phrog_32498	NA	unknown function
UHGV-0015801_11	UniRef90	UniRef90_A0A7J3HPC0	YkgJ family cysteine cluster protein (Fragment)	NA
UHGV-0015801_11	Pfam	PF03692	Putative zinc- or iron-chelating domain	CxxCxxCC
UHGV-0015801_11	COG	COG0727	NA	NA
UHGV-0015801_20	KOfam	K05925	METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]	NA
UHGV-0015801_20	PHROG	phrog_359	DNA methyltransferase	other
UHGV-0015801_20	UniRef90	UniRef90_A0A424N484	DNA methyltransferase	NA
UHGV-0015801_20	eggNOG-mapper	411463.EUBVEN_01655	MT-A70	NA
UHGV-0015801_20	PADLOC	MTase_II_00048	Type II methyltransferase	RM
UHGV-0015801_20	Pfam	PF05063	MT-A70	MT-A70
UHGV-0015801_20	COG	COG4725	N6-adenosine-specific RNA methylase IME4	NA
UHGV-0015801_20	Structural annotation	PF05063, MF_01872, NF010253, COG4725	NA	NA
UHGV-0015801_22	PHROG	phrog_17284	NA	unknown function
UHGV-0015801_22	UniRef90	UniRef90_A0A843GTH9	DNA (Cytosine-5-)-methyltransferase	NA
UHGV-0015801_22	eggNOG-mapper	224308.BSU20250	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0015801_22	PADLOC	oMTase_00023	orphan methyltransferase	RM
UHGV-0015801_22	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0015801_22	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0015801_23	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0015801_23	UniRef90	UniRef90_A0A2S1GSI4	HNH homing endonuclease	NA
UHGV-0015801_23	eggNOG-mapper	10685.B6V2J8_BPSP1	sequence-specific DNA binding transcription factor activity	NA
UHGV-0015801_23	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0015801_23	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0015801_23	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0015801_23	Structural annotation	PF07463, PF07453, TIGR01453	NA	NA
UHGV-0015801_24	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0015801_24	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0015801_24	UniRef90	UniRef90_UPI0008FB837B	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0015801_24	eggNOG-mapper	646413.C5IUI7_9CAUD	C-5 cytosine-specific DNA methylase	NA
UHGV-0015801_24	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0015801_24	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0015801_24	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0015801_24	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0015801_25	PHROG	phrog_9576	NA	unknown function
UHGV-0015801_26	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0015801_26	UniRef90	UniRef90_A0A174GVB6	Superfamily II helicase	NA
UHGV-0015801_26	eggNOG-mapper	568816.Acin_1851	NA	NA
UHGV-0015801_26	Pfam	PF06048	NA	DUF927
UHGV-0015801_26	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0015801_26	COG	COG5519	NA	NA
UHGV-0015801_26	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0015801_28	UniRef90	UniRef90_UPI001D07B715	DNA-packaging protein	NA
UHGV-0015801_28	eggNOG-mapper	1235793.C809_00539	NA	NA
UHGV-0015801_28	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0015801_32	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0015801_32	UniRef90	UniRef90_UPI00071E3AD4	NUMOD4 motif-containing HNH endonuclease	NA
UHGV-0015801_32	eggNOG-mapper	51369.Q8LTA9_9CAUD	HNH endonuclease	NA
UHGV-0015801_32	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0015801_32	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0015801_32	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0015801_32	Structural annotation	PF07463, PF20987	NA	NA
UHGV-0015801_35	PHROG	phrog_1233	NA	unknown function
UHGV-0015801_35	Structural annotation	PF13058	NA	NA
UHGV-0015801_36	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0015801_36	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0015801_36	UniRef90	UniRef90_A0A1Q6L4F6	dUTP diphosphatase	NA
UHGV-0015801_36	eggNOG-mapper	1214166.ALLG01000009_gene518	dUTPase	NA
UHGV-0015801_36	Pfam	PF00692	dUTPase	dUTPase
UHGV-0015801_36	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0015801_36	Structural annotation	PF00692, MF_00116, NF010561, COG0756	NA	NA
UHGV-0015801_41	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0015801_41	UniRef90	UniRef90_A0A4Q5C857	Terminase_6C domain-containing protein	NA
UHGV-0015801_41	eggNOG-mapper	1232453.BAIF02000058_gene1623	TIGRFAM Phage	NA
UHGV-0015801_41	COG	COG5410	NA	NA
UHGV-0015801_41	Structural annotation	PF17289, MF_04147, NF033889, COG5362	NA	NA
UHGV-0015801_42	PHROG	phrog_64	portal protein	head and packaging
UHGV-0015801_42	UniRef90	UniRef90_UPI001BAB50B9	phage portal protein	NA
UHGV-0015801_42	eggNOG-mapper	1232453.BAIF02000058_gene1625	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0015801_42	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0015801_42	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0015801_43	Structural annotation	PF14265	NA	NA
UHGV-0015801_44	PHROG	phrog_909	major head protein	head and packaging
UHGV-0015801_44	UniRef90	UniRef90_A0A098MDH2	NA	NA
UHGV-0015801_44	eggNOG-mapper	268407.PWYN_15680	NA	NA
UHGV-0015801_44	Structural annotation	PF02924	NA	NA
UHGV-0015801_45	PHROG	phrog_29	major head protein	head and packaging
UHGV-0015801_45	UniRef90	UniRef90_UPI00082C04A5	major capsid protein	NA
UHGV-0015801_45	eggNOG-mapper	1158612.I580_01912	Phage major capsid protein E	NA
UHGV-0015801_45	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0015801_45	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0015801_48	UniRef90	UniRef90_A0A845R6M6	DNA-packaging protein	NA
UHGV-0015801_49	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0015801_50	Structural annotation	PF17395, TIGR01725	NA	NA
UHGV-0015801_51	PHROG	phrog_158	major tail protein	tail
UHGV-0015801_51	eggNOG-mapper	469596.HMPREF9488_01310	NA	NA
UHGV-0015801_51	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0015801_52	UniRef90	UniRef90_A0A374HKD4	NA	NA
UHGV-0015801_52	eggNOG-mapper	1121333.JMLH01000047_gene1012	NA	NA
UHGV-0015801_52	Pfam	PF16478	NA	DUF5055
UHGV-0015801_52	Structural annotation	PF16478	NA	NA
UHGV-0015801_53	eggNOG-mapper	1121333.JMLH01000047_gene1011	NA	NA
UHGV-0015801_54	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0015801_54	eggNOG-mapper	203119.Cthe_1709	Phage tail tape measure protein, TP901 family	NA
UHGV-0015801_54	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0015801_55	PHROG	phrog_1194	NA	unknown function
UHGV-0015801_55	eggNOG-mapper	483218.BACPEC_01144	NA	NA
UHGV-0015801_55	Pfam	PF20458	NA	DUF6711
UHGV-0015801_55	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0015801_56	PHROG	phrog_6616	tail protein	tail
UHGV-0015801_56	eggNOG-mapper	1262449.CP6013_3213	Phage minor structural protein	NA
UHGV-0015801_56	Pfam	PF02018	Carbohydrate binding domain	CBM_4_9
UHGV-0015801_56	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0015801_56	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0015801_57	PHROG	phrog_2712	tail fiber protein	tail
UHGV-0015801_57	eggNOG-mapper	1111134.HMPREF1253_0369	beta-propeller repeat	NA
UHGV-0015801_57	COG	COG1520	Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat	NA
UHGV-0015801_59	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0015801_59	UniRef90	UniRef90_UPI000BBC0648	NUMOD4 motif-containing HNH endonuclease	NA
UHGV-0015801_59	eggNOG-mapper	1423814.HMPREF0549_1779	NUMOD4 motif	NA
UHGV-0015801_59	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0015801_59	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0015801_59	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0015801_61	Pfam	PF04647	Accessory gene regulator B	AgrB
UHGV-0015801_63	eggNOG-mapper	476272.RUMHYD_01952	NA	NA
UHGV-0015801_65	PHROG	phrog_16490	NA	unknown function
UHGV-0015801_65	eggNOG-mapper	476272.RUMHYD_01770	NA	NA
UHGV-0015801_66	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-0015801_67	PHROG	phrog_28802	NA	unknown function
UHGV-0015801_67	eggNOG-mapper	476272.RUMHYD_01772	NA	NA
UHGV-0015801_68	PHROG	phrog_3754	NA	unknown function
UHGV-0015801_68	eggNOG-mapper	1235790.C805_00054	NA	NA
UHGV-0015801_70	Structural annotation	PF08481, NF032891, COG5456	NA	NA
UHGV-0015801_74	Structural annotation	PF16938	NA	NA
UHGV-0015801_75	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0015801_75	PHROG	phrog_7698	endolysin	lysis
UHGV-0015801_75	UniRef90	UniRef90_A0A413UF85	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0015801_75	eggNOG-mapper	561177.ANHYDRO_01866	Cpl-7 lysozyme C-terminal domain protein	NA
UHGV-0015801_75	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0015801_75	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0015801_75	COG	COG1388	LysM repeat	NA
UHGV-0015801_75	Structural annotation	PF01510, PF01471, MF_04111, NF008758, COG5632, COG3409	NA	NA
UHGV-0015801_76	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0015801_76	PHROG	phrog_11992	NA	unknown function
UHGV-0015801_76	UniRef90	UniRef90_UPI00189C71A7	CHC2 zinc finger domain-containing protein	NA
UHGV-0015801_76	eggNOG-mapper	411471.SUBVAR_04339	YodL-like	NA
UHGV-0015801_76	PADLOC	drt-cluster192	DRT	DRT
UHGV-0015801_76	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0015801_76	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0015801_76	Structural annotation	PF01807, PF00401	NA	NA
UHGV-0015801_78	PHROG	phrog_5702	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0015801_78	UniRef90	UniRef90_A0A2I1K296	VRR-NUC domain-containing protein	NA
UHGV-0015801_78	eggNOG-mapper	1410670.JHXF01000015_gene2271	VRR_NUC	NA
UHGV-0015801_78	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0015801_78	Structural annotation	PF01870, MF_00130, NF002581, COG1591	NA	NA
UHGV-0015801_79	KOfam	K19789	radD; DNA repair protein RadD	NA
UHGV-0015801_79	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0015801_79	UniRef90	UniRef90_A0A1U7M6F3	UvrABC system protein B	NA
UHGV-0015801_79	eggNOG-mapper	1410670.JHXF01000015_gene2270	helicase	NA
UHGV-0015801_79	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0015801_79	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0015801_79	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0015801_79	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0015801_79	Structural annotation	PF04851, PF00271, MF_01489, TIGR04095, COG1061	NA	NA
UHGV-0015801_81	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0015801_81	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0015801_81	UniRef90	UniRef90_R6XT61	Single-stranded DNA-binding protein	NA
UHGV-0015801_81	eggNOG-mapper	398512.JQKC01000002_gene1869	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0015801_81	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0015801_81	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0015801_81	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0015801_81	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0015801_81	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0015801_83	PHROG	phrog_1227	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0015801_83	UniRef90	UniRef90_A0A374HKI3	NA	NA
UHGV-0015801_83	eggNOG-mapper	1120998.AUFC01000030_gene2216	NA	NA
UHGV-0015801_83	Pfam	PF12684	NA	DUF3799
UHGV-0015801_83	COG	COG1074	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0015801_83	Structural annotation	PF12684, TIGR01896, COG4343	NA	NA
UHGV-0015801_87	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0015801_87	UniRef90	UniRef90_UPI0011C8A287	recombinase RecT	NA
UHGV-0015801_87	eggNOG-mapper	33035.JPJF01000071_gene4462	NA	NA
UHGV-0015801_87	Pfam	PF03837	RecT family	RecT
UHGV-0015801_89	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0015801_89	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0015801_89	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0015801_91	PHROG	phrog_2349	NA	unknown function