UHGV-0016410

Genome information

Genome length 28,663 bps

CDS count 60

Completeness 70.28% (medium-quality)

geNomad score 0.9720

Prediction confidence Confident

Genome information
Genome ID	UHGV-0016410
vOTU ID	vOTU-022493
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-A-D_O_6_1198__NODE_3323_length_28663_cov_18.296404
BioSample	NA
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	70.28% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9720
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	19.42
Jumbo phage	No

Genome content
Genome length	28,663 bps
GC content	42.90%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	60
CDS density	87.93%
Average CDS length	425.85 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0016410_2	PHROG	phrog_26484	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0016410_2	UniRef90	UniRef90_C6JN48	PC4 domain-containing protein	NA
UHGV-0016410_2	eggNOG-mapper	469618.FVAG_00192	Transcriptional Coactivator p15 (PC4)	NA
UHGV-0016410_2	COG	COG4443	NA	NA
UHGV-0016410_2	Structural annotation	COG4443	NA	NA
UHGV-0016410_3	COG	COG0507	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0016410_4	PHROG	phrog_87	metallo-protease	other
UHGV-0016410_4	UniRef90	UniRef90_A0A166RHY4	Metallopeptidase ImmA	NA
UHGV-0016410_4	eggNOG-mapper	1294142.CINTURNW_0291	IrrE N-terminal-like domain	NA
UHGV-0016410_4	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0016410_4	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0016410_4	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0016410_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0016410_5	UniRef90	UniRef90_A0A4R2LQN9	Helix-turn-helix protein	NA
UHGV-0016410_5	eggNOG-mapper	411462.DORLON_00819	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0016410_5	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0016410_5	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0016410_5	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0016410_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0016410_6	UniRef90	UniRef90_UPI00162837A4	helix-turn-helix domain-containing protein	NA
UHGV-0016410_6	eggNOG-mapper	696281.Desru_1067	Helix-turn-helix XRE-family like proteins	NA
UHGV-0016410_6	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0016410_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0016410_17	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0016410_17	UniRef90	UniRef90_A0A844E6Y4	Recombinase	NA
UHGV-0016410_17	eggNOG-mapper	1095750.HMPREF9970_1677	YqaJ viral recombinase family	NA
UHGV-0016410_17	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0016410_17	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0016410_17	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0016410_17	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0016410_18	PHROG	phrog_674	NA	unknown function
UHGV-0016410_18	UniRef90	UniRef90_A0A6N7XHF2	NA	NA
UHGV-0016410_18	eggNOG-mapper	742765.HMPREF9457_02106	NA	NA
UHGV-0016410_18	Pfam	PF07083	NA	DUF1351
UHGV-0016410_18	Structural annotation	PF07083	NA	NA
UHGV-0016410_19	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0016410_19	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0016410_19	UniRef90	UniRef90_A0A1C5PRW1	p33	NA
UHGV-0016410_19	eggNOG-mapper	742765.HMPREF9457_02107	RecT family	NA
UHGV-0016410_19	Pfam	PF03837	RecT family	RecT
UHGV-0016410_19	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0016410_19	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0016410_19	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0016410_20	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0016410_20	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0016410_20	UniRef90	UniRef90_UPI001C3B6F21	single-stranded DNA-binding protein	NA
UHGV-0016410_20	eggNOG-mapper	1321814.HMPREF9089_01469	Single-stranded DNA-binding protein	NA
UHGV-0016410_20	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0016410_20	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0016410_20	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0016410_20	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0016410_20	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0016410_21	PHROG	phrog_8489	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0016410_21	UniRef90	UniRef90_A0A6N7WK53	DNA replication protein	NA
UHGV-0016410_21	eggNOG-mapper	931626.Awo_c31180	DnaD domain protein	NA
UHGV-0016410_21	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0016410_21	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-0016410_22	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0016410_22	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0016410_22	UniRef90	UniRef90_A0A410PX27	IstB_IS21 domain-containing protein	NA
UHGV-0016410_22	eggNOG-mapper	428125.CLOLEP_01820	NA	NA
UHGV-0016410_22	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0016410_22	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0016410_23	PHROG	phrog_9804	NA	unknown function
UHGV-0016410_26	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0016410_26	eggNOG-mapper	1280692.AUJL01000044_gene2344	NA	NA
UHGV-0016410_26	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-0016410_27	PHROG	phrog_1271	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0016410_27	Pfam	PF12855	ECL1/2/3 zinc binding proteins	Ecl1
UHGV-0016410_27	Structural annotation	PF09889, NF001638, COG4068, COG4338	NA	NA
UHGV-0016410_28	PHROG	phrog_31107	NA	unknown function
UHGV-0016410_29	PHROG	phrog_22292	NA	unknown function
UHGV-0016410_30	UniRef90	UniRef90_UPI001D005DC4	NA	NA
UHGV-0016410_30	eggNOG-mapper	1408423.JHYA01000024_gene1215	NA	NA
UHGV-0016410_30	Pfam	PF07866	NA	DUF1653
UHGV-0016410_30	COG	COG4728	NA	NA
UHGV-0016410_30	Structural annotation	PF07866, COG4728	NA	NA
UHGV-0016410_33	UniRef90	UniRef90_UPI001D005DC4	NA	NA
UHGV-0016410_33	eggNOG-mapper	592028.GCWU000321_00789	NA	NA
UHGV-0016410_33	Pfam	PF07866	NA	DUF1653
UHGV-0016410_33	COG	COG4728	NA	NA
UHGV-0016410_33	Structural annotation	PF07866, COG4728	NA	NA
UHGV-0016410_34	Structural annotation	PF13876	NA	NA
UHGV-0016410_35	eggNOG-mapper	537007.BLAHAN_05459	NA	NA
UHGV-0016410_35	Structural annotation	PF09871, COG4014	NA	NA
UHGV-0016410_36	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0016410_36	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0016410_36	UniRef90	UniRef90_A0A7U9R7H5	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0016410_36	eggNOG-mapper	397291.C804_05723	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0016410_36	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0016410_36	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0016410_36	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0016410_38	UniRef90	UniRef90_A0A6N2Z2X2	HTH cro/C1-type domain-containing protein	NA
UHGV-0016410_38	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0016410_38	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0016410_40	UniRef90	UniRef90_A0A414QEQ0	NA	NA
UHGV-0016410_43	PHROG	phrog_1374	NA	unknown function
UHGV-0016410_43	UniRef90	UniRef90_Q4ZD31	ORF040	NA
UHGV-0016410_43	eggNOG-mapper	1141106.CAIB01000118_gene947	NA	NA
UHGV-0016410_43	Structural annotation	TIGR04438	NA	NA
UHGV-0016410_44	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0016410_44	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0016410_44	UniRef90	UniRef90_A0A496N5A7	Deoxyuridine 5'-triphosphate nucleotidohydrolase	NA
UHGV-0016410_44	eggNOG-mapper	1163671.JAGI01000002_gene2135	NA	NA
UHGV-0016410_44	Pfam	PF00692	dUTPase	dUTPase
UHGV-0016410_44	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0016410_44	Structural annotation	PF00692, PF08866, MF_00116, TIGR00576, COG0756	NA	NA
UHGV-0016410_46	PHROG	phrog_474	phosphofructokinase	other
UHGV-0016410_46	UniRef90	UniRef90_UPI00195F5FF7	NA	NA
UHGV-0016410_46	eggNOG-mapper	1203606.HMPREF1526_00237	NA	NA
UHGV-0016410_46	Pfam	PF19905	NA	DUF6378
UHGV-0016410_47	KOfam	K06416	spoVS; stage V sporulation protein S	NA
UHGV-0016410_47	UniRef90	UniRef90_A0A3M1N1V4	Stage V sporulation protein S	NA
UHGV-0016410_47	Pfam	PF04232	Stage V sporulation protein S (SpoVS)	SpoVS
UHGV-0016410_47	COG	COG2359	Stage V sporulation protein SpoVS, predicted DNA-binding, AlbA superfamily	NA
UHGV-0016410_49	KOfam	K04078	groES, HSPE1; chaperonin GroES	NA
UHGV-0016410_49	PHROG	phrog_3188	co-chaperonin GroES	other
UHGV-0016410_49	UniRef90	UniRef90_A0A7X8GYN4	Co-chaperonin GroES	NA
UHGV-0016410_49	eggNOG-mapper	52598.EE36_03888	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter	NA
UHGV-0016410_49	Pfam	PF00166	Chaperonin 10 Kd subunit	Cpn10
UHGV-0016410_49	COG	COG0234	Co-chaperonin GroES (HSP10)	NA
UHGV-0016410_49	Structural annotation	PF00166, MF_00580, NF001531, COG0234	NA	NA
UHGV-0016410_56	PHROG	phrog_2059	anti-restriction protein	moron, auxiliary metabolic gene and host takeover
UHGV-0016410_56	UniRef90	UniRef90_UPI001F39E69D	antirestriction protein ArdA	NA
UHGV-0016410_56	eggNOG-mapper	1105031.HMPREF1141_2776	NA	NA
UHGV-0016410_56	Pfam	PF07275	Antirestriction protein (ArdA)	ArdA
UHGV-0016410_56	dbAPIS	APIS003	DNA mimetics, i.e. structurally and electrostatically imitate the B-form of DNA and thus function as competitive inhibitors of restriction enzymes.	NA
UHGV-0016410_56	COG	COG4227	Antirestriction protein ArdC	NA
UHGV-0016410_56	Structural annotation	PF07275, COG4734	NA	NA
UHGV-0016410_57	Structural annotation	NF040976	NA	NA
UHGV-0016410_60	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0016410_60	UniRef90	UniRef90_UPI001F401ABC	terminase family protein	NA
UHGV-0016410_60	eggNOG-mapper	316274.Haur_0564	NA	NA
UHGV-0016410_60	COG	COG4373	Mu-like prophage FluMu protein gp28	NA