UHGV-0016454

Genome information

Genome length 32,385 bps

CDS count 49

Completeness 95.10% (high-quality)

geNomad score 0.9814

Prediction confidence Confident

Genome information
Genome ID	UHGV-0016454
vOTU ID	vOTU-081239
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_E_17_1727__NODE_4065_length_32385_cov_8.045964
BioSample	SAMEA4766007
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.10% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9814
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	48.65
Jumbo phage	No

Genome content
Genome length	32,385 bps
GC content	39.03%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	93.73%
Average CDS length	622.65 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0016454_1	PHROG	phrog_37604	NA	unknown function
UHGV-0016454_1	eggNOG-mapper	457412.RSAG_01109	NA	NA
UHGV-0016454_2	eggNOG-mapper	552396.HMPREF0863_01651	lysozyme activity	NA
UHGV-0016454_2	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0016454_5	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-0016454_6	PHROG	phrog_5555	tail protein	tail
UHGV-0016454_6	UniRef90	UniRef90_UPI00189BED7C	phage tail protein	NA
UHGV-0016454_6	eggNOG-mapper	1280689.AUJC01000007_gene3306	Phage minor structural protein	NA
UHGV-0016454_6	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0016454_6	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0016454_6	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0016454_6	Structural annotation	PF14594, PF04862, TIGR01665, TIGR04362, COG4926	NA	NA
UHGV-0016454_7	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0016454_7	UniRef90	UniRef90_R6N293	Putative phage tail component domain protein	NA
UHGV-0016454_7	COG	COG4722	Phage-related protein YomH	NA
UHGV-0016454_7	Structural annotation	PF20753, PF20195, TIGR01633, COG4722	NA	NA
UHGV-0016454_8	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-0016454_8	UniRef90	UniRef90_A0A3A6E908	TMP_3 domain-containing protein	NA
UHGV-0016454_8	eggNOG-mapper	1216932.CM240_0683	tape measure	NA
UHGV-0016454_8	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0016454_8	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0016454_8	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0016454_8	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0016454_9	PHROG	phrog_706	NA	unknown function
UHGV-0016454_9	UniRef90	UniRef90_A0A143ZUS4	Bacteriophage Gp15 protein	NA
UHGV-0016454_9	eggNOG-mapper	1300150.EMQU_2490	Bacteriophage Gp15 protein	NA
UHGV-0016454_9	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0016454_9	Structural annotation	PF06854	NA	NA
UHGV-0016454_11	PHROG	phrog_820	major tail protein	tail
UHGV-0016454_11	UniRef90	UniRef90_A0A3A6EPU8	S-l_SbsC_C domain-containing protein	NA
UHGV-0016454_11	eggNOG-mapper	428125.CLOLEP_00178	Belongs to the glycosyl hydrolase family 6	NA
UHGV-0016454_11	COG	COG5492	NA	NA
UHGV-0016454_11	Structural annotation	PF06199, PF18316, TIGR02126, COG5437	NA	NA
UHGV-0016454_12	Structural annotation	PF12691	NA	NA
UHGV-0016454_13	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0016454_13	UniRef90	UniRef90_A0A2K4QBZ3	Putative Minor capsid protein	NA
UHGV-0016454_13	eggNOG-mapper	1395513.P343_12640	Minor capsid protein	NA
UHGV-0016454_13	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0016454_13	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0016454_14	PHROG	phrog_793	head-tail adaptor	connector
UHGV-0016454_14	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0016454_15	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0016454_15	UniRef90	UniRef90_A0A023CQT5	Protein gp8	NA
UHGV-0016454_15	eggNOG-mapper	1295642.H839_08319	NA	NA
UHGV-0016454_16	PHROG	phrog_422	major head protein	head and packaging
UHGV-0016454_16	UniRef90	UniRef90_A0A316T938	S-l_SbsC_C domain-containing protein	NA
UHGV-0016454_16	eggNOG-mapper	428125.CLOLEP_00183	COG NOG28280 non supervised orthologous group	NA
UHGV-0016454_16	Structural annotation	PF19821, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0016454_20	PHROG	phrog_27009	NA	unknown function
UHGV-0016454_21	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0016454_21	UniRef90	UniRef90_UPI001E5C8078	phage minor capsid protein	NA
UHGV-0016454_21	eggNOG-mapper	428125.CLOLEP_01802	NA	NA
UHGV-0016454_21	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0016454_21	COG	COG2369	NA	NA
UHGV-0016454_21	Structural annotation	PF06152, PF12636	NA	NA
UHGV-0016454_22	PHROG	phrog_533	portal protein	head and packaging
UHGV-0016454_22	UniRef90	UniRef90_UPI001898C571	phage portal protein	NA
UHGV-0016454_22	eggNOG-mapper	428125.CLOLEP_01803	NA	NA
UHGV-0016454_22	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0016454_22	NCBIFam	TIGR01542.1	phage portal protein	NA
UHGV-0016454_22	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0016454_23	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0016454_23	PHROG	phrog_29775	NA	unknown function
UHGV-0016454_23	UniRef90	UniRef90_A7VTB2	Phage terminase, large subunit, PBSX family	NA
UHGV-0016454_23	eggNOG-mapper	428125.CLOLEP_01804	Phage terminase, large subunit, PBSX family	NA
UHGV-0016454_23	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0016454_23	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0016454_23	COG	COG1783	Phage terminase large subunit	NA
UHGV-0016454_23	Structural annotation	PF04466, PF20441, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0016454_25	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0016454_25	PHROG	phrog_21498	NA	unknown function
UHGV-0016454_25	UniRef90	UniRef90_A0A7X2P836	ParB domain-containing protein	NA
UHGV-0016454_25	eggNOG-mapper	469378.Ccur_02830	DNA binding	NA
UHGV-0016454_25	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0016454_25	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0016454_25	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0016454_25	Structural annotation	PF02195, PF05869, MF_02015, TIGR00180, TIGR01712, COG5119	NA	NA
UHGV-0016454_26	UniRef90	UniRef90_UPI0018A04B6B	NA	NA
UHGV-0016454_26	Pfam	PF07374	NA	DUF1492
UHGV-0016454_27	PHROG	phrog_9804	NA	unknown function
UHGV-0016454_27	UniRef90	UniRef90_A0A3D1LDS2	Inhibitor_G39P domain-containing protein	NA
UHGV-0016454_27	eggNOG-mapper	1410650.JHWL01000003_gene2847	Loader and inhibitor of phage G40P	NA
UHGV-0016454_27	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0016454_27	Structural annotation	PF11417	NA	NA
UHGV-0016454_30	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0016454_36	PHROG	phrog_5968	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0016454_36	UniRef90	UniRef90_UPI001D4A22B1	phage replisome organizer N-terminal domain-containing protein	NA
UHGV-0016454_36	eggNOG-mapper	565664.EFXG_01794	Phage replisome organizer, N-terminal domain protein	NA
UHGV-0016454_36	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0016454_36	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0016454_36	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0016454_36	Structural annotation	PF09681, TIGR01714, COG3756	NA	NA
UHGV-0016454_37	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0016454_37	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0016454_37	UniRef90	UniRef90_A5ZPW8	Crossover junction endodeoxyribonuclease RusA	NA
UHGV-0016454_37	eggNOG-mapper	411459.RUMOBE_01038	COG COG4570 Holliday junction resolvase	NA
UHGV-0016454_37	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0016454_37	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0016454_37	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0016454_38	PHROG	phrog_4973	NA	unknown function
UHGV-0016454_38	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0016454_38	Structural annotation	PF14090, NF040939, COG4738	NA	NA
UHGV-0016454_39	PHROG	phrog_7566	NA	unknown function
UHGV-0016454_39	eggNOG-mapper	1304866.K413DRAFT_1198	NA	NA
UHGV-0016454_40	PHROG	phrog_1389	NA	unknown function
UHGV-0016454_40	eggNOG-mapper	883156.HMPREF9282_01223	NA	NA
UHGV-0016454_40	Structural annotation	PF11056, TIGR04376, COG1842	NA	NA
UHGV-0016454_41	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0016454_41	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0016454_41	UniRef90	UniRef90_A0A1T4K5I1	Single-stranded DNA-binding protein	NA
UHGV-0016454_41	eggNOG-mapper	1384057.CD33_14010	Single-strand binding protein family	NA
UHGV-0016454_41	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0016454_41	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0016454_41	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0016454_41	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0016454_41	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0016454_42	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0016454_42	UniRef90	UniRef90_UPI001898EED4	siphovirus Gp157 family protein	NA
UHGV-0016454_42	eggNOG-mapper	910314.HMPREF9220_0635	Siphovirus Gp157	NA
UHGV-0016454_42	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0016454_44	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0016454_44	UniRef90	UniRef90_UPI0018AC33A4	ERF family protein	NA
UHGV-0016454_44	eggNOG-mapper	1484479.DI14_04910	ERF superfamily	NA
UHGV-0016454_44	Pfam	PF04404	ERF superfamily	ERF
UHGV-0016454_44	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0016454_47	UniRef90	UniRef90_A0A3R6RM60	XRE family transcriptional regulator	NA
UHGV-0016454_47	eggNOG-mapper	718252.FP2_01130	NA	NA
UHGV-0016454_47	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0016454_48	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0016454_48	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0016454_48	UniRef90	UniRef90_A0A448W7R3	Transcriptional repressor DicA	NA
UHGV-0016454_48	eggNOG-mapper	526218.Sterm_3926	sequence-specific DNA binding	NA
UHGV-0016454_48	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0016454_48	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0016454_48	Pfam	PF13413	Helix-turn-helix domain	HTH_25
UHGV-0016454_48	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0016454_48	NCBIFam	NF041951.1	RstR family transcriptional repressor	NA
UHGV-0016454_48	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0016454_48	Structural annotation	PF01381, MF_00535, NF041951, NF007257, COG1396, COG1513	NA	NA
UHGV-0016454_49	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0016454_49	PHROG	phrog_95	integrase	integration and excision
UHGV-0016454_49	UniRef90	UniRef90_A0A1C6CR25	Recombinase	NA
UHGV-0016454_49	eggNOG-mapper	1256908.HMPREF0373_00206	Resolvase, N terminal domain	NA
UHGV-0016454_49	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0016454_49	Pfam	PF07508	Recombinase	Recombinase
UHGV-0016454_49	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0016454_49	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA