UHGV-0016657

Genome information

Genome length 24,841 bps

CDS count 45

Completeness 59.12% (medium-quality)

geNomad score 0.9833

Prediction confidence Confident

Genome information
Genome ID	UHGV-0016657
vOTU ID	vOTU-022548
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_A_6_1816__NODE_2178_length_24841_cov_42.155993
BioSample	SAMEA4766053
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	59.12% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9833
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	21.22
Jumbo phage	No

Genome content
Genome length	24,841 bps
GC content	53.91%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	94.92%
Average CDS length	528.27 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0016657_2	Pfam	PF21722	Glycine-rich domain	Gly_rich_2
UHGV-0016657_2	Structural annotation	PF21722	NA	NA
UHGV-0016657_3	Pfam	PF21722	Glycine-rich domain	Gly_rich_2
UHGV-0016657_3	Structural annotation	PF21722	NA	NA
UHGV-0016657_5	PHROG	phrog_18725	NA	unknown function
UHGV-0016657_5	eggNOG-mapper	1235797.C816_02657	NA	NA
UHGV-0016657_5	COG	COG3292	Periplasmic ligand-binding sensor domain	NA
UHGV-0016657_5	Structural annotation	PF13754, COG2372	NA	NA
UHGV-0016657_6	KOfam	K01361	E3.4.21.96; lactocepin [EC:3.4.21.96]	NA
UHGV-0016657_6	PHROG	phrog_11157	NA	unknown function
UHGV-0016657_6	UniRef90	UniRef90_UPI001C10C6DC	Ig-like domain-containing protein	NA
UHGV-0016657_6	eggNOG-mapper	476272.RUMHYD_02867	NA	NA
UHGV-0016657_6	Pfam	PF19077	Bacterial Ig-like domain	Big_13
UHGV-0016657_6	Pfam	PF09136	Glucodextranase, domain B	Glucodextran_B
UHGV-0016657_6	COG	COG3292	Periplasmic ligand-binding sensor domain	NA
UHGV-0016657_6	Structural annotation	PF09136, PF13205, PF13754, MF_04116, NF032891, COG2372, COG5456	NA	NA
UHGV-0016657_8	PHROG	phrog_13879	NA	unknown function
UHGV-0016657_8	eggNOG-mapper	1226322.HMPREF1545_00061	NA	NA
UHGV-0016657_8	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0016657_9	PHROG	phrog_1194	NA	unknown function
UHGV-0016657_9	eggNOG-mapper	1226322.HMPREF1545_00060	NA	NA
UHGV-0016657_9	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0016657_10	KOfam	K03529	smc; chromosome segregation protein	NA
UHGV-0016657_10	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0016657_10	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-0016657_10	eggNOG-mapper	1235797.C816_04182	SLT domain	NA
UHGV-0016657_10	COG	COG1511	NA	NA
UHGV-0016657_10	Structural annotation	PF16789, TIGR02473	NA	NA
UHGV-0016657_11	PHROG	phrog_806	NA	unknown function
UHGV-0016657_11	UniRef90	UniRef90_A0A212ITM5	Telomeric repeat-binding factor 2	NA
UHGV-0016657_11	eggNOG-mapper	476272.RUMHYD_01730	NA	NA
UHGV-0016657_11	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0016657_11	Pfam	PF11611	NA	DUF4352
UHGV-0016657_11	Structural annotation	PF11611, MF_00791, NF003967, COG2967	NA	NA
UHGV-0016657_12	PHROG	phrog_706	NA	unknown function
UHGV-0016657_12	UniRef90	UniRef90_UPI000682A80B	Gp15 family bacteriophage protein	NA
UHGV-0016657_12	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-0016657_12	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0016657_12	Structural annotation	PF06854	NA	NA
UHGV-0016657_13	PHROG	phrog_11299	NA	unknown function
UHGV-0016657_13	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-0016657_13	Structural annotation	PF10666	NA	NA
UHGV-0016657_14	PHROG	phrog_3099	NA	unknown function
UHGV-0016657_14	eggNOG-mapper	1226322.HMPREF1545_00056	NA	NA
UHGV-0016657_14	Structural annotation	TIGR02126	NA	NA
UHGV-0016657_15	PHROG	phrog_3266	tail completion	connector
UHGV-0016657_15	UniRef90	UniRef90_A0A2Z4QA01	Minor capsid protein	NA
UHGV-0016657_15	eggNOG-mapper	1232443.BAIA02000078_gene24	NA	NA
UHGV-0016657_15	Structural annotation	PF12691	NA	NA
UHGV-0016657_16	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0016657_16	UniRef90	UniRef90_UPI00195E1497	minor capsid protein	NA
UHGV-0016657_16	eggNOG-mapper	1226322.HMPREF1545_00054	Minor capsid protein	NA
UHGV-0016657_16	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0016657_16	Structural annotation	PF11114	NA	NA
UHGV-0016657_17	PHROG	phrog_3366	NA	unknown function
UHGV-0016657_17	eggNOG-mapper	1226322.HMPREF1545_00053	NA	NA
UHGV-0016657_17	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0016657_18	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0016657_18	eggNOG-mapper	642492.Clole_0822	NA	NA
UHGV-0016657_19	PHROG	phrog_544	major head protein	head and packaging
UHGV-0016657_19	UniRef90	UniRef90_A0A810PZM2	S-l_SbsC_C domain-containing protein	NA
UHGV-0016657_19	eggNOG-mapper	1347392.CCEZ01000005_gene1236	NA	NA
UHGV-0016657_19	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0016657_20	UniRef90	UniRef90_A0A6B9SU02	Fibronectin autolysin	NA
UHGV-0016657_20	Structural annotation	PF06810	NA	NA
UHGV-0016657_21	Structural annotation	PF18152	NA	NA
UHGV-0016657_23	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0016657_23	UniRef90	UniRef90_UPI001D080D49	phage minor capsid protein	NA
UHGV-0016657_23	eggNOG-mapper	1226322.HMPREF1545_00046	Phage minor capsid protein 2	NA
UHGV-0016657_23	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0016657_23	COG	COG2369	NA	NA
UHGV-0016657_23	Structural annotation	PF06152	NA	NA
UHGV-0016657_25	PHROG	phrog_533	portal protein	head and packaging
UHGV-0016657_25	UniRef90	UniRef90_A0A1C5N775	Phage portal protein, putative, A118 family	NA
UHGV-0016657_25	eggNOG-mapper	1226322.HMPREF1545_00044	NA	NA
UHGV-0016657_25	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0016657_25	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0016657_26	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0016657_26	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0016657_26	UniRef90	UniRef90_A0A3D3Y0N9	PBSX family phage terminase large subunit	NA
UHGV-0016657_26	eggNOG-mapper	1226322.HMPREF1545_00043	Phage terminase large subunit	NA
UHGV-0016657_26	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0016657_26	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0016657_26	COG	COG1783	Phage terminase large subunit	NA
UHGV-0016657_26	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0016657_27	UniRef90	UniRef90_UPI0009523D83	helix-turn-helix domain containing protein	NA
UHGV-0016657_27	eggNOG-mapper	1226322.HMPREF1545_00042	NA	NA
UHGV-0016657_27	Structural annotation	PF13542	NA	NA
UHGV-0016657_28	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0016657_29	Structural annotation	PF06003, MF_01354, TIGR00739, COG5475	NA	NA
UHGV-0016657_32	UniRef90	UniRef90_A0A8D9PDT5	Hydrogenase/urease nickel incorporation protein	NA
UHGV-0016657_37	KOfam	K05925	METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]	NA
UHGV-0016657_37	PHROG	phrog_359	DNA methyltransferase	other
UHGV-0016657_37	UniRef90	UniRef90_A0A3D1PJR7	DNA methyltransferase	NA
UHGV-0016657_37	eggNOG-mapper	400682.PAC_15710341	primary miRNA methylation	NA
UHGV-0016657_37	PADLOC	MTase_II_00048	Type II methyltransferase	RM
UHGV-0016657_37	Pfam	PF05063	MT-A70	MT-A70
UHGV-0016657_37	COG	COG4725	N6-adenosine-specific RNA methylase IME4	NA
UHGV-0016657_37	Structural annotation	PF05063, MF_01872, NF010253, COG4725	NA	NA
UHGV-0016657_38	UniRef90	UniRef90_A0A8D9PDK1	Anti-repressor	NA
UHGV-0016657_41	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0016657_41	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0016657_41	UniRef90	UniRef90_A0A1H7KWC5	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase	NA
UHGV-0016657_41	eggNOG-mapper	1280696.ATVY01000096_gene1971	NA	NA
UHGV-0016657_41	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0016657_41	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0016657_41	Structural annotation	PF01507, MF_00063, NF006327, COG0175	NA	NA
UHGV-0016657_42	UniRef90	UniRef90_A0A844U3V8	Leucine-rich repeat protein	NA
UHGV-0016657_43	UniRef90	UniRef90_A0A098GES5	Putative phage associated protein	NA
UHGV-0016657_43	Structural annotation	PF01423, MF_00257, NF001963, COG1958	NA	NA
UHGV-0016657_44	Structural annotation	PF19885	NA	NA
UHGV-0016657_45	Pfam	PF06356	NA	DUF1064