UHGV-0016752

Genome information

Genome length 20,514 bps

CDS count 24

Completeness 54.55% (medium-quality)

geNomad score 0.9768

Prediction confidence Confident

Genome information
Genome ID	UHGV-0016752
vOTU ID	vOTU-029090
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-A-D_G_6_1094__NODE_3598_length_20514_cov_6.132113
BioSample	SAMEA4765554
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	54.55% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9768
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.93
Jumbo phage	No

Genome content
Genome length	20,514 bps
GC content	61.62%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	24
CDS density	96.62%
Average CDS length	828.38 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0016752_1	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0016752_1	eggNOG-mapper	742738.HMPREF9460_04063	NA	NA
UHGV-0016752_2	UniRef90	UniRef90_UPI001F232519	cysteine-rich KTR domain-containing protein	NA
UHGV-0016752_2	eggNOG-mapper	1226322.HMPREF1545_00110	Cysteine-rich KTR	NA
UHGV-0016752_2	Pfam	PF14205	Cysteine-rich KTR	Cys_rich_KTR
UHGV-0016752_2	Structural annotation	PF14205	NA	NA
UHGV-0016752_3	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0016752_3	UniRef90	UniRef90_UPI001BB476DD	HNH endonuclease	NA
UHGV-0016752_3	eggNOG-mapper	693746.OBV_19960	HNH endonuclease	NA
UHGV-0016752_3	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0016752_3	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0016752_3	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0016752_4	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0016752_4	UniRef90	UniRef90_UPI001EDE2A13	phage terminase small subunit P27 family	NA
UHGV-0016752_4	eggNOG-mapper	1007096.BAGW01000012_gene2373	Phage terminase, small subunit	NA
UHGV-0016752_4	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0016752_4	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0016752_4	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0016752_4	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0016752_5	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0016752_5	UniRef90	UniRef90_UPI0019583763	terminase large subunit	NA
UHGV-0016752_5	eggNOG-mapper	1007096.BAGW01000012_gene2374	Phage Terminase	NA
UHGV-0016752_5	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0016752_5	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0016752_5	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0016752_5	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0016752_7	PHROG	phrog_12	portal protein	head and packaging
UHGV-0016752_7	UniRef90	UniRef90_UPI001958B72F	phage portal protein	NA
UHGV-0016752_7	eggNOG-mapper	1007103.AFHW01000142_gene1297	Phage portal protein	NA
UHGV-0016752_7	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0016752_7	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0016752_7	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0016752_7	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0016752_8	PHROG	phrog_16951	NA	unknown function
UHGV-0016752_8	eggNOG-mapper	742738.HMPREF9460_04070	NA	NA
UHGV-0016752_8	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0016752_9	PHROG	phrog_10	major head protein	head and packaging
UHGV-0016752_9	UniRef90	UniRef90_UPI00195B1FEC	phage major capsid protein	NA
UHGV-0016752_9	eggNOG-mapper	742740.HMPREF9474_04304	Phage capsid family	NA
UHGV-0016752_9	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0016752_9	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0016752_9	Structural annotation	PF05065, PF14182, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0016752_10	UniRef90	UniRef90_UPI0019597439	head-tail connector protein	NA
UHGV-0016752_10	eggNOG-mapper	693746.OBV_20060	NA	NA
UHGV-0016752_10	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0016752_11	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0016752_11	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0016752_11	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0016752_12	UniRef90	UniRef90_UPI00156FE9DA	HK97 gp10 family phage protein	NA
UHGV-0016752_12	eggNOG-mapper	1158604.I591_01763	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0016752_12	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0016752_12	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0016752_13	Structural annotation	PF05657	NA	NA
UHGV-0016752_14	PHROG	phrog_2175	protein with Ig domain	other
UHGV-0016752_14	eggNOG-mapper	1219626.HMPREF1639_07450	NA	NA
UHGV-0016752_14	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0016752_15	Structural annotation	PF17388	NA	NA
UHGV-0016752_16	eggNOG-mapper	1219626.HMPREF1639_07460	NA	NA
UHGV-0016752_17	PHROG	phrog_23464	NA	unknown function
UHGV-0016752_17	UniRef90	UniRef90_A0A1C6H5M9	Phage-related minor tail protein	NA
UHGV-0016752_17	eggNOG-mapper	1378168.N510_03078	Tail tape measure protein, TP901 family	NA
UHGV-0016752_17	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0016752_17	Structural annotation	PF20155	NA	NA
UHGV-0016752_18	UniRef90	UniRef90_UPI000E5CE8E9	phage tail family protein	NA
UHGV-0016752_18	eggNOG-mapper	1235792.C808_05378	NA	NA
UHGV-0016752_18	Structural annotation	PF05709, PF11699, TIGR01633, NF009806, COG4722	NA	NA
UHGV-0016752_19	PHROG	phrog_3558	tail protein	tail
UHGV-0016752_19	UniRef90	UniRef90_A0A8J6U198	Phage tail protein	NA
UHGV-0016752_19	eggNOG-mapper	1235800.C819_02223	Prophage endopeptidase tail	NA
UHGV-0016752_19	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0016752_19	COG	COG4926	Phage-related protein	NA
UHGV-0016752_19	Structural annotation	PF06605, PF21683, TIGR01665, COG4926	NA	NA
UHGV-0016752_20	PHROG	phrog_372	tail protein	tail
UHGV-0016752_20	UniRef90	UniRef90_UPI001373A0FD	NA	NA
UHGV-0016752_20	eggNOG-mapper	1235802.C823_05263	NA	NA
UHGV-0016752_20	Pfam	PF05895	NA	DUF859
UHGV-0016752_20	COG	COG4675	Phage tail collar domain	NA
UHGV-0016752_20	Structural annotation	PF05895, MF_04116, NF010681, COG3291	NA	NA
UHGV-0016752_21	PHROG	phrog_11541	NA	unknown function
UHGV-0016752_21	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-0016752_21	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-0016752_22	PHROG	phrog_199	holin	lysis
UHGV-0016752_22	UniRef90	UniRef90_UPI001BEFC888	Phage holin family protein	NA
UHGV-0016752_22	eggNOG-mapper	1160721.RBI_I01565	Bacteriophage holin family	NA
UHGV-0016752_22	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0016752_22	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0016752_22	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0016752_22	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0016752_23	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0016752_23	PHROG	phrog_435	endolysin	lysis
UHGV-0016752_23	UniRef90	UniRef90_UPI001BF1661D	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0016752_23	eggNOG-mapper	994573.T472_0210960	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-0016752_23	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0016752_23	Pfam	PF05036	SPOR domain	SPOR
UHGV-0016752_23	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0016752_23	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0016752_24	eggNOG-mapper	742738.HMPREF9460_01415	Bacterial SH3 domain	NA
UHGV-0016752_24	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA