UHGV-0016817

Genome information

Genome length 36,789 bps

CDS count 71

Completeness 92.26% (high-quality)

geNomad score 0.9779

Prediction confidence Confident

Genome information
Genome ID	UHGV-0016817
vOTU ID	vOTU-065972
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-A-D_E_6_1152__NODE_2548_length_36789_cov_6.319351
BioSample	SAMEA4765612
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	92.26% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9779
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	46.88
Jumbo phage	No

Genome content
Genome length	36,789 bps
GC content	57.32%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	71
CDS density	92.93%
Average CDS length	485.20 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0016817_1	PHROG	phrog_21498	NA	unknown function
UHGV-0016817_1	UniRef90	UniRef90_A0A4Q5AKJ0	Chromosome partitioning protein ParB	NA
UHGV-0016817_1	eggNOG-mapper	469378.Ccur_02830	DNA binding	NA
UHGV-0016817_1	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0016817_1	Structural annotation	PF05869, TIGR01712	NA	NA
UHGV-0016817_2	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0016817_2	Structural annotation	PF04545, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0016817_3	UniRef90	UniRef90_UPI001D08E07B	thymidylate synthase ThyX	NA
UHGV-0016817_3	eggNOG-mapper	397290.C810_01371	NA	NA
UHGV-0016817_3	Pfam	PF02511	Thymidylate synthase complementing protein	Thy1
UHGV-0016817_3	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-0016817_5	PHROG	phrog_1485	NA	unknown function
UHGV-0016817_5	UniRef90	UniRef90_A0A6B4I5K6	NA	NA
UHGV-0016817_5	eggNOG-mapper	1415774.U728_1099	NA	NA
UHGV-0016817_5	Pfam	PF07659	Nucleotide modification associated domain 1	DUF1599
UHGV-0016817_6	Structural annotation	TIGR03655	NA	NA
UHGV-0016817_8	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0016817_8	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0016817_8	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0016817_8	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0016817_12	Structural annotation	PF08962	NA	NA
UHGV-0016817_14	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0016817_14	eggNOG-mapper	887929.HMP0721_1279	NA	NA
UHGV-0016817_14	Structural annotation	PF01870, MF_01490, COG1591	NA	NA
UHGV-0016817_15	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0016817_15	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0016817_15	UniRef90	UniRef90_A0A1Q6PWP3	DNA helicase	NA
UHGV-0016817_15	eggNOG-mapper	1408428.JNJP01000053_gene2425	it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins	NA
UHGV-0016817_15	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0016817_15	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0016817_15	COG	COG0305	Replicative DNA helicase	NA
UHGV-0016817_15	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0016817_16	PHROG	phrog_16304	NA	unknown function
UHGV-0016817_16	Pfam	PF19808	NA	DUF6291
UHGV-0016817_17	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0016817_17	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0016817_17	UniRef90	UniRef90_A0A7C6SPS4	Single-stranded DNA-binding protein	NA
UHGV-0016817_17	eggNOG-mapper	1123511.KB905849_gene3281	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0016817_17	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0016817_17	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0016817_17	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0016817_17	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0016817_17	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0016817_18	PHROG	phrog_398	NA	unknown function
UHGV-0016817_18	UniRef90	UniRef90_K1U9S1	NA	NA
UHGV-0016817_18	eggNOG-mapper	585503.HMPREF7545_1716	Putative HNHc nuclease	NA
UHGV-0016817_18	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-0016817_18	Structural annotation	PF16784	NA	NA
UHGV-0016817_19	PHROG	phrog_659	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0016817_19	UniRef90	UniRef90_UPI001E5A6693	NA	NA
UHGV-0016817_19	eggNOG-mapper	1507.HMPREF0262_00431	NA	NA
UHGV-0016817_19	Pfam	PF06378	NA	DUF1071
UHGV-0016817_19	Structural annotation	PF06378, COG4712	NA	NA
UHGV-0016817_23	eggNOG-mapper	742735.HMPREF9467_00844	NA	NA
UHGV-0016817_25	Structural annotation	PF12728, NF033787, COG3311	NA	NA
UHGV-0016817_26	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0016817_26	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0016817_26	UniRef90	UniRef90_A0A136Q823	DNA-binding helix-turn-helix protein	NA
UHGV-0016817_26	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0016817_26	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0016817_26	Structural annotation	PF01381, MF_00535, TIGR03070, COG1476	NA	NA
UHGV-0016817_27	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0016817_27	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0016817_27	UniRef90	UniRef90_UPI000EB190FD	helix-turn-helix transcriptional regulator	NA
UHGV-0016817_27	eggNOG-mapper	935565.JAEM01000002_gene3717	Helix-turn-helix XRE-family like proteins	NA
UHGV-0016817_27	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0016817_27	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0016817_27	COG	COG0662	Mannose-6-phosphate isomerase, cupin superfamily	NA
UHGV-0016817_27	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0016817_28	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0016817_28	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0016817_28	UniRef90	UniRef90_A0A175A2K7	HTH-type transcriptional regulator immR	NA
UHGV-0016817_28	eggNOG-mapper	1449343.JQLQ01000002_gene1558	transcriptional	NA
UHGV-0016817_28	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0016817_28	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0016817_28	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0016817_28	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0016817_29	UniRef90	UniRef90_A0A419VV00	Tetratricopeptide repeat protein	NA
UHGV-0016817_29	eggNOG-mapper	1114856.C496_14291	COG0457 FOG TPR repeat	NA
UHGV-0016817_29	Pfam	PF13181	Tetratricopeptide repeat	TPR_8
UHGV-0016817_33	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0016817_33	Structural annotation	PF01381, MF_00535, NF041951, COG1396	NA	NA
UHGV-0016817_34	KOfam	K14059	int; integrase	NA
UHGV-0016817_34	PHROG	phrog_1	integrase	integration and excision
UHGV-0016817_34	UniRef90	UniRef90_A0A1Q6PWD2	Tyr recombinase domain-containing protein	NA
UHGV-0016817_34	eggNOG-mapper	1203606.HMPREF1526_00215	Phage integrase family	NA
UHGV-0016817_34	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0016817_34	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0016817_34	Structural annotation	PF00589, PF13102, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0016817_37	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0016817_38	PHROG	phrog_16490	NA	unknown function
UHGV-0016817_40	PHROG	phrog_21718	NA	unknown function
UHGV-0016817_40	eggNOG-mapper	1235790.C805_00058	NA	NA
UHGV-0016817_45	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0016817_45	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0016817_45	UniRef90	UniRef90_A0A415ZLW7	DNA-binding response regulator	NA
UHGV-0016817_45	eggNOG-mapper	1280664.AUIX01000040_gene2326	Plasmid pRiA4b ORF-3-like protein	NA
UHGV-0016817_45	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0016817_45	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0016817_46	UniRef90	UniRef90_A0A843IZ65	Sigma70_r4 domain-containing protein	NA
UHGV-0016817_46	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0016817_46	Structural annotation	PF08281, MF_00245, NF001070, COG2739	NA	NA
UHGV-0016817_47	PHROG	phrog_10091	holin	lysis
UHGV-0016817_47	UniRef90	UniRef90_A0A367GJ74	Phage holin	NA
UHGV-0016817_47	eggNOG-mapper	428127.EUBDOL_01206	COG5546 Small integral membrane protein	NA
UHGV-0016817_47	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0016817_47	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0016817_47	COG	COG5546	NA	NA
UHGV-0016817_47	Structural annotation	COG5546	NA	NA
UHGV-0016817_48	eggNOG-mapper	641107.CDLVIII_1359	NA	NA
UHGV-0016817_49	KOfam	K21471	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	NA
UHGV-0016817_49	PHROG	phrog_329	minor tail protein	tail
UHGV-0016817_49	UniRef90	UniRef90_A0A7C6FNM5	NlpC/P60 domain-containing protein	NA
UHGV-0016817_49	eggNOG-mapper	755731.Clo1100_1179	cysteine-type peptidase activity	NA
UHGV-0016817_49	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0016817_49	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0016817_49	Structural annotation	PF00877, PF14627, NF033742, COG0791, COG4991	NA	NA
UHGV-0016817_51	Structural annotation	PF10651, NF033814	NA	NA
UHGV-0016817_53	PHROG	phrog_30034	NA	unknown function
UHGV-0016817_53	UniRef90	UniRef90_R5QX84	Carbohydrate binding domain protein	NA
UHGV-0016817_53	eggNOG-mapper	411460.RUMTOR_02099	NA	NA
UHGV-0016817_53	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0016817_53	Structural annotation	PF14600	NA	NA
UHGV-0016817_54	PHROG	phrog_918	NA	unknown function
UHGV-0016817_54	UniRef90	UniRef90_UPI0008DFA801	NA	NA
UHGV-0016817_54	eggNOG-mapper	357809.Cphy_2966	NA	NA
UHGV-0016817_54	Pfam	PF19791	NA	DUF6275
UHGV-0016817_54	Structural annotation	PF19791	NA	NA
UHGV-0016817_56	eggNOG-mapper	743722.Sph21_2090	NA	NA
UHGV-0016817_56	Pfam	PF21722	Glycine-rich domain	Gly_rich_2
UHGV-0016817_56	Pfam	PF07679	Immunoglobulin I-set domain	I-set
UHGV-0016817_56	COG	COG1361	S-layer protein MJ0795, predicted component of type IV pili-like system	NA
UHGV-0016817_57	PHROG	phrog_9534	head protein	head and packaging
UHGV-0016817_57	eggNOG-mapper	748224.HMPREF9436_00702	COG NOG18825 non supervised orthologous group	NA
UHGV-0016817_57	Structural annotation	PF20747	NA	NA
UHGV-0016817_58	PHROG	phrog_538	minor tail protein	tail
UHGV-0016817_58	UniRef90	UniRef90_UPI001111490C	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0016817_58	eggNOG-mapper	397290.C810_00431	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0016817_58	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0016817_58	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0016817_59	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0016817_59	UniRef90	UniRef90_A0A6N3F5Z2	Phage tail protein	NA
UHGV-0016817_59	eggNOG-mapper	411471.SUBVAR_06982	Phage tail protein	NA
UHGV-0016817_59	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0016817_60	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0016817_60	UniRef90	UniRef90_A0A3D0EFB4	Phage tail protein (Fragment)	NA
UHGV-0016817_60	eggNOG-mapper	1123312.KB904569_gene357	Phage tail tape measure protein TP901	NA
UHGV-0016817_60	COG	COG5412	Phage-related protein	NA
UHGV-0016817_61	eggNOG-mapper	931626.Awo_c30390	Possible plasma membrane-binding motif in junctophilins, PIP-5-kinases and protein kinases.	NA
UHGV-0016817_61	Pfam	PF02493	MORN repeat	MORN
UHGV-0016817_61	COG	COG4642	NA	NA
UHGV-0016817_63	PHROG	phrog_1021	NA	unknown function
UHGV-0016817_63	eggNOG-mapper	1256908.HMPREF0373_00470	NA	NA
UHGV-0016817_64	PHROG	phrog_885	major tail protein	tail
UHGV-0016817_64	eggNOG-mapper	1256908.HMPREF0373_00471	NA	NA
UHGV-0016817_64	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0016817_65	Structural annotation	PF11367	NA	NA
UHGV-0016817_66	PHROG	phrog_17977	NA	unknown function
UHGV-0016817_66	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0016817_66	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0016817_68	PHROG	phrog_247	major head protein	head and packaging
UHGV-0016817_68	UniRef90	UniRef90_UPI000E4FE492	phage coat protein	NA
UHGV-0016817_68	eggNOG-mapper	1151292.QEW_4535	NA	NA
UHGV-0016817_68	COG	COG1106	ATPase/GTPase, AAA15 family	NA
UHGV-0016817_68	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0016817_69	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0016817_69	UniRef90	UniRef90_A0A174AAF6	Clp R domain-containing protein	NA
UHGV-0016817_69	eggNOG-mapper	1238184.CM001792_gene93	Phage minor structural protein GP20	NA
UHGV-0016817_69	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0016817_69	Structural annotation	PF06810	NA	NA
UHGV-0016817_70	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0016817_70	eggNOG-mapper	509191.AEDB02000075_gene2797	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0016817_70	Structural annotation	TIGR01725, COG5005	NA	NA
UHGV-0016817_71	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-0016817_71	UniRef90	UniRef90_A0A8G2BMZ6	Phage Mu protein F like protein	NA
UHGV-0016817_71	eggNOG-mapper	1192868.CAIU01000008_gene919	Phage Mu protein F like protein	NA
UHGV-0016817_71	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0016817_71	COG	COG2369	NA	NA