UHGV-0016955

Genome information

Genome length 32,171 bps

CDS count 53

Completeness 84.16% (medium-quality)

geNomad score 0.9800

Prediction confidence Confident

Genome information
Genome ID	UHGV-0016955
vOTU ID	vOTU-029335
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-A-D_J_22_1662__NODE_3567_length_32171_cov_8.463887
BioSample	NA
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	84.16% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9800
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.05
Jumbo phage	No

Genome content
Genome length	32,171 bps
GC content	58.41%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	89.54%
Average CDS length	546.00 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0016955_1	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0016955_1	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0016955_1	UniRef90	UniRef90_UPI00030EB95F	helix-turn-helix domain-containing protein	NA
UHGV-0016955_1	eggNOG-mapper	1007096.BAGW01000011_gene2356	sequence-specific DNA binding	NA
UHGV-0016955_1	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0016955_1	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0016955_1	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0016955_2	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0016955_2	UniRef90	UniRef90_UPI00189C29C4	helix-turn-helix domain-containing protein	NA
UHGV-0016955_2	eggNOG-mapper	1226325.HMPREF1548_03112	Helix-turn-helix domain	NA
UHGV-0016955_2	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0016955_2	Structural annotation	PF12844, MF_00535, NF041951, COG3655	NA	NA
UHGV-0016955_3	Structural annotation	PF03444, COG0640	NA	NA
UHGV-0016955_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0016955_6	Structural annotation	PF01381, MF_02017, TIGR03070, COG3655	NA	NA
UHGV-0016955_7	KOfam	K14059	int; integrase	NA
UHGV-0016955_7	PHROG	phrog_1	integrase	integration and excision
UHGV-0016955_7	UniRef90	UniRef90_A0A1H8A220	Site-specific recombinase XerD	NA
UHGV-0016955_7	eggNOG-mapper	1507.HMPREF0262_00307	Phage integrase family	NA
UHGV-0016955_7	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0016955_7	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0016955_7	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0016955_8	UniRef90	UniRef90_A0A7M1RSZ3	RNA polymerase sigma factor/ubiquitin-like protein	NA
UHGV-0016955_8	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-0016955_10	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0016955_16	UniRef90	UniRef90_A0A6N3FXW7	Helix-turn-helix	NA
UHGV-0016955_16	eggNOG-mapper	742738.HMPREF9460_04059	Helix-turn-helix XRE-family like proteins	NA
UHGV-0016955_16	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0016955_16	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0016955_16	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0016955_18	UniRef90	UniRef90_A0A658JVX5	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0016955_18	Structural annotation	PF04545, MF_00674, NF008895, COG1342	NA	NA
UHGV-0016955_19	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0016955_19	PHROG	phrog_18955	NA	unknown function
UHGV-0016955_19	UniRef90	UniRef90_UPI001C035E39	D-Ala-D-Ala carboxypeptidase family metallohydrolase	NA
UHGV-0016955_19	eggNOG-mapper	1235797.C816_04171	Peptidase M15	NA
UHGV-0016955_19	Pfam	PF09992	Phosphodiester glycosidase	NAGPA
UHGV-0016955_19	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0016955_19	COG	COG3108	NA	NA
UHGV-0016955_19	Structural annotation	PF09992, PF08291, COG4632, COG3108	NA	NA
UHGV-0016955_20	PHROG	phrog_199	holin	lysis
UHGV-0016955_20	UniRef90	UniRef90_K1UL76	Holin, toxin secretion/phage lysis	NA
UHGV-0016955_20	eggNOG-mapper	411467.BACCAP_00280	Bacteriophage holin family	NA
UHGV-0016955_20	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0016955_20	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0016955_20	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0016955_20	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0016955_22	PHROG	phrog_10993	Hoc-like head decoration	head and packaging
UHGV-0016955_22	UniRef90	UniRef90_K1UI43	NA	NA
UHGV-0016955_22	eggNOG-mapper	1121334.KB911071_gene1970	NA	NA
UHGV-0016955_22	Pfam	PF19789	NA	DUF6273
UHGV-0016955_22	Structural annotation	PF19789	NA	NA
UHGV-0016955_24	PHROG	phrog_13589	NA	unknown function
UHGV-0016955_24	eggNOG-mapper	428125.CLOLEP_01434	NA	NA
UHGV-0016955_25	PHROG	phrog_31538	NA	unknown function
UHGV-0016955_26	Structural annotation	PF10651, NF038186	NA	NA
UHGV-0016955_28	PHROG	phrog_32744	NA	unknown function
UHGV-0016955_28	eggNOG-mapper	1120998.AUFC01000030_gene2247	NA	NA
UHGV-0016955_28	Structural annotation	PF14594, PF21722, NF033848, COG4379	NA	NA
UHGV-0016955_30	PHROG	phrog_23464	NA	unknown function
UHGV-0016955_30	eggNOG-mapper	33035.JPJF01000023_gene3232	phage tail tape measure protein	NA
UHGV-0016955_30	COG	COG5412	Phage-related protein	NA
UHGV-0016955_30	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-0016955_32	PHROG	phrog_88	major tail protein	tail
UHGV-0016955_32	UniRef90	UniRef90_R5EB96	Phage major tail protein phi13 family	NA
UHGV-0016955_32	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0016955_33	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0016955_33	UniRef90	UniRef90_R5IIS5	HK97 gp10 family phage protein	NA
UHGV-0016955_33	eggNOG-mapper	1203606.HMPREF1526_00974	NA	NA
UHGV-0016955_33	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0016955_33	Structural annotation	TIGR01725	NA	NA
UHGV-0016955_34	UniRef90	UniRef90_A0A4S2AEF8	Phage tail protein	NA
UHGV-0016955_34	eggNOG-mapper	1203606.HMPREF1526_00975	NA	NA
UHGV-0016955_34	Structural annotation	PF05657	NA	NA
UHGV-0016955_35	PHROG	phrog_25	head closure Hc1	connector
UHGV-0016955_35	UniRef90	UniRef90_UPI001898DBDF	phage head closure protein	NA
UHGV-0016955_35	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0016955_35	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0016955_35	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0016955_35	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0016955_36	UniRef90	UniRef90_UPI0010315EA4	phage gp6-like head-tail connector protein	NA
UHGV-0016955_36	eggNOG-mapper	742738.HMPREF9460_00878	NA	NA
UHGV-0016955_36	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0016955_36	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0016955_37	PHROG	phrog_10	major head protein	head and packaging
UHGV-0016955_37	UniRef90	UniRef90_A0A1Y4RLC8	Phage major capsid protein	NA
UHGV-0016955_37	eggNOG-mapper	469616.FMAG_00561	Phage capsid family	NA
UHGV-0016955_37	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0016955_37	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0016955_37	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0016955_37	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0016955_38	PHROG	phrog_16951	NA	unknown function
UHGV-0016955_38	UniRef90	UniRef90_R6LX42	PE-PGRS family protein	NA
UHGV-0016955_38	eggNOG-mapper	742738.HMPREF9460_04070	NA	NA
UHGV-0016955_38	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0016955_39	PHROG	phrog_12	portal protein	head and packaging
UHGV-0016955_39	UniRef90	UniRef90_A0A845R2J9	Phage portal protein	NA
UHGV-0016955_39	eggNOG-mapper	397288.C806_01508	Phage portal protein	NA
UHGV-0016955_39	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0016955_39	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0016955_39	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0016955_39	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0016955_41	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0016955_41	UniRef90	UniRef90_A0A845R4S1	Terminase large subunit	NA
UHGV-0016955_41	eggNOG-mapper	742738.HMPREF9460_00872	Phage Terminase	NA
UHGV-0016955_41	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0016955_41	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0016955_41	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0016955_41	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0016955_42	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0016955_42	UniRef90	UniRef90_UPI001EDE2A13	phage terminase small subunit P27 family	NA
UHGV-0016955_42	eggNOG-mapper	1007096.BAGW01000012_gene2373	Phage terminase, small subunit	NA
UHGV-0016955_42	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0016955_42	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0016955_42	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0016955_42	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0016955_43	PHROG	phrog_21498	NA	unknown function
UHGV-0016955_43	UniRef90	UniRef90_C7MM70	ParB-like nuclease	NA
UHGV-0016955_43	eggNOG-mapper	469378.Ccur_02830	DNA binding	NA
UHGV-0016955_43	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0016955_43	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0016955_43	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0016955_43	Structural annotation	PF02195, MF_02015, TIGR04285, TIGR01712, COG1475	NA	NA
UHGV-0016955_44	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0016955_44	UniRef90	UniRef90_UPI001EDE5545	HNH endonuclease	NA
UHGV-0016955_44	eggNOG-mapper	693746.OBV_19960	HNH endonuclease	NA
UHGV-0016955_44	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0016955_44	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0016955_44	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0016955_45	UniRef90	UniRef90_UPI001F232519	cysteine-rich KTR domain-containing protein	NA
UHGV-0016955_45	eggNOG-mapper	1226322.HMPREF1545_00110	Cysteine-rich KTR	NA
UHGV-0016955_45	Pfam	PF14205	Cysteine-rich KTR	Cys_rich_KTR
UHGV-0016955_45	Structural annotation	PF14205	NA	NA
UHGV-0016955_46	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0016955_46	eggNOG-mapper	693746.OBV_19950	NA	NA
UHGV-0016955_46	Structural annotation	PF05840	NA	NA
UHGV-0016955_49	PHROG	phrog_3136	NA	unknown function
UHGV-0016955_49	UniRef90	UniRef90_A0A3D0HBD2	ASCH domain-containing protein	NA
UHGV-0016955_49	eggNOG-mapper	97139.C824_00742	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0016955_49	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0016955_49	Structural annotation	PF08819, MF_00684, NF008917, COG4933	NA	NA
UHGV-0016955_50	PHROG	phrog_38832	NA	unknown function
UHGV-0016955_50	eggNOG-mapper	445972.ANACOL_00165	NA	NA