UHGV-0017139

Genome information

Genome length 35,655 bps

CDS count 50

Completeness 99.90% (high-quality)

geNomad score 0.9737

Prediction confidence Confident

Genome information
Genome ID	UHGV-0017139
vOTU ID	vOTU-067700
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-A-D_J_22_1662__NODE_3099_length_35655_cov_4.244533
BioSample	SAMEA4765942
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9737
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	19.57
Jumbo phage	No

Genome content
Genome length	35,655 bps
GC content	57.44%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	91.77%
Average CDS length	658.50 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0017139_1	UniRef90	UniRef90_A0A6N8GZL2	RepB family plasmid replication initiator protein	NA
UHGV-0017139_1	eggNOG-mapper	411471.SUBVAR_05652	Initiator Replication protein	NA
UHGV-0017139_1	Pfam	PF21205	Initiator Rep protein, WH2	Rep3_C
UHGV-0017139_1	COG	COG5527	Protein involved in initiation of plasmid replication	NA
UHGV-0017139_2	KOfam	K06399	spoIVB; stage IV sporulation protein B [EC:3.4.21.116]	NA
UHGV-0017139_2	UniRef90	UniRef90_A0A6N8H204	PDZ domain-containing protein	NA
UHGV-0017139_2	eggNOG-mapper	411471.SUBVAR_05180	stage IV sporulation protein B	NA
UHGV-0017139_2	Pfam	PF17820	PDZ domain	PDZ_6
UHGV-0017139_2	Pfam	PF05580	SpoIVB peptidase S55	Peptidase_S55
UHGV-0017139_2	COG	COG3975	Predicted metalloprotease, contains C-terminal PDZ domain	NA
UHGV-0017139_3	PHROG	phrog_34615	NA	unknown function
UHGV-0017139_3	UniRef90	UniRef90_UPI001899B45E	NA	NA
UHGV-0017139_3	eggNOG-mapper	1050201.KB913034_gene635	NA	NA
UHGV-0017139_3	Pfam	PF11185	NA	DUF2971
UHGV-0017139_4	PHROG	phrog_199	holin	lysis
UHGV-0017139_4	UniRef90	UniRef90_A0A6N8H4I3	Holin	NA
UHGV-0017139_4	eggNOG-mapper	411471.SUBVAR_05868	toxin secretion phage lysis holin	NA
UHGV-0017139_4	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0017139_4	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0017139_4	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0017139_4	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0017139_5	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0017139_5	PHROG	phrog_10030	tail length tape measure protein	tail
UHGV-0017139_5	UniRef90	UniRef90_UPI0019599082	M23 family metallopeptidase	NA
UHGV-0017139_5	eggNOG-mapper	1380356.JNIK01000001_gene2289	Evidence 2b Function of strongly homologous gene	NA
UHGV-0017139_5	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0017139_5	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0017139_5	Structural annotation	PF01551, NF040883	NA	NA
UHGV-0017139_7	UniRef90	UniRef90_UPI001D07731B	NA	NA
UHGV-0017139_7	eggNOG-mapper	1235800.C819_00472	NA	NA
UHGV-0017139_7	Pfam	PF19789	NA	DUF6273
UHGV-0017139_7	Structural annotation	PF19789	NA	NA
UHGV-0017139_8	PHROG	phrog_1220	head protein	head and packaging
UHGV-0017139_8	UniRef90	UniRef90_E2ELJ8	Truncated putative phage structural protein	NA
UHGV-0017139_8	eggNOG-mapper	864178.E2ELJ8_9CAUD	cell adhesion	NA
UHGV-0017139_9	PHROG	phrog_538	minor tail protein	tail
UHGV-0017139_9	UniRef90	UniRef90_UPI000C7C9115	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0017139_9	eggNOG-mapper	665956.HMPREF1032_02940	NA	NA
UHGV-0017139_9	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0017139_9	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0017139_10	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0017139_10	UniRef90	UniRef90_A0A3A6ECR2	Phage tail family protein	NA
UHGV-0017139_10	eggNOG-mapper	411471.SUBVAR_06982	Phage tail protein	NA
UHGV-0017139_10	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0017139_11	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-0017139_11	UniRef90	UniRef90_A0A6N8H0F9	Phage tail tape measure protein	NA
UHGV-0017139_11	eggNOG-mapper	748224.HMPREF9436_03326	Phage tail tape measure protein, TP901 family	NA
UHGV-0017139_11	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0017139_11	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0017139_11	COG	COG5283	Phage-related tail protein	NA
UHGV-0017139_11	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0017139_12	PHROG	phrog_1633	NA	unknown function
UHGV-0017139_12	UniRef90	UniRef90_UPI000484F4A3	NA	NA
UHGV-0017139_12	eggNOG-mapper	1121864.OMO_02160	NA	NA
UHGV-0017139_12	Pfam	PF17318	NA	DUF5361
UHGV-0017139_12	Structural annotation	PF17318	NA	NA
UHGV-0017139_13	PHROG	phrog_1526	NA	unknown function
UHGV-0017139_13	UniRef90	UniRef90_A0A2X3SH55	NA	NA
UHGV-0017139_13	eggNOG-mapper	875454.BAEW01000017_gene1589	NA	NA
UHGV-0017139_14	PHROG	phrog_117	major tail protein	tail
UHGV-0017139_14	UniRef90	UniRef90_A0A6N8H024	Phage tail protein	NA
UHGV-0017139_14	eggNOG-mapper	1121864.OMO_02158	domain, Protein	NA
UHGV-0017139_14	COG	COG5492	NA	NA
UHGV-0017139_14	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0017139_15	PHROG	phrog_123	tail terminator	connector
UHGV-0017139_15	eggNOG-mapper	1280698.AUJS01000007_gene1043	NA	NA
UHGV-0017139_15	Structural annotation	PF06141	NA	NA
UHGV-0017139_16	PHROG	phrog_387	neck protein	connector
UHGV-0017139_16	eggNOG-mapper	1121864.OMO_02156	NA	NA
UHGV-0017139_17	PHROG	phrog_501	head closure Hc1	connector
UHGV-0017139_17	UniRef90	UniRef90_D2BQF2	NA	NA
UHGV-0017139_17	eggNOG-mapper	748224.HMPREF9436_00693	NA	NA
UHGV-0017139_17	Structural annotation	PF12206, COG5614	NA	NA
UHGV-0017139_18	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-0017139_18	UniRef90	UniRef90_E2ZGA8	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0017139_18	Structural annotation	PF09355	NA	NA
UHGV-0017139_19	PHROG	phrog_267	major head protein	head and packaging
UHGV-0017139_19	UniRef90	UniRef90_A0A4P8IA69	Phage capsid and scaffold	NA
UHGV-0017139_19	eggNOG-mapper	748224.HMPREF9436_03335	NA	NA
UHGV-0017139_19	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0017139_20	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0017139_20	UniRef90	UniRef90_D4K444	Phage minor structural protein GP20	NA
UHGV-0017139_20	eggNOG-mapper	748224.HMPREF9436_03336	Phage minor structural protein GP20	NA
UHGV-0017139_20	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0017139_21	PHROG	phrog_29609	NA	unknown function
UHGV-0017139_21	UniRef90	UniRef90_A0A6N8H118	CdiA_C domain-containing protein	NA
UHGV-0017139_21	eggNOG-mapper	748224.HMPREF9436_01469	NA	NA
UHGV-0017139_21	Pfam	PF18810	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease2	PBECR2
UHGV-0017139_21	COG	COG5529	Phage-encoded DNA-binding protein ECs1768, contains HTH and DnaT DNA-binding domains	NA
UHGV-0017139_22	PHROG	phrog_104	portal protein	head and packaging
UHGV-0017139_22	UniRef90	UniRef90_A0A6N8H2B6	Phage portal protein	NA
UHGV-0017139_22	eggNOG-mapper	748224.HMPREF9436_01468	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0017139_22	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0017139_23	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0017139_23	UniRef90	UniRef90_UPI001D0087E2	terminase large subunit	NA
UHGV-0017139_23	eggNOG-mapper	1410630.JNKP01000001_gene1822	phage terminase, large subunit	NA
UHGV-0017139_23	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0017139_23	Structural annotation	PF20441, PF03354, MF_04146, NF033889, COG4626	NA	NA
UHGV-0017139_24	PHROG	phrog_1066	NA	unknown function
UHGV-0017139_24	eggNOG-mapper	445975.COLSTE_02166	NA	NA
UHGV-0017139_25	PHROG	phrog_338	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0017139_25	UniRef90	UniRef90_UPI0015F33F36	HNH endonuclease	NA
UHGV-0017139_25	eggNOG-mapper	748224.HMPREF9436_01465	NA	NA
UHGV-0017139_28	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0017139_28	UniRef90	UniRef90_A0A2V2FTX8	Sigma70_r4 domain-containing protein	NA
UHGV-0017139_28	eggNOG-mapper	411471.SUBVAR_05843	NA	NA
UHGV-0017139_28	Structural annotation	PF04545, MF_00674, NF005248, COG1595	NA	NA
UHGV-0017139_30	eggNOG-mapper	411471.SUBVAR_05842	ParB-like nuclease domain	NA
UHGV-0017139_30	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0017139_31	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0017139_31	PHROG	phrog_4715	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0017139_31	UniRef90	UniRef90_A0A6N8H6R0	ParB domain-containing protein	NA
UHGV-0017139_31	eggNOG-mapper	411471.SUBVAR_05842	ParB-like nuclease domain	NA
UHGV-0017139_31	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0017139_31	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0017139_32	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0017139_32	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0017139_32	UniRef90	UniRef90_A0A6N8H6J9	ParA family protein	NA
UHGV-0017139_32	eggNOG-mapper	411471.SUBVAR_05839	AAA domain	NA
UHGV-0017139_32	Pfam	PF13614	AAA domain	AAA_31
UHGV-0017139_32	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0017139_32	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0017139_33	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0017139_33	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0017139_33	UniRef90	UniRef90_A0A6N8GZX5	DNA helicase	NA
UHGV-0017139_33	eggNOG-mapper	411471.SUBVAR_05838	Participates in initiation and elongation during chromosome replication	NA
UHGV-0017139_33	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0017139_33	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0017139_33	COG	COG0305	Replicative DNA helicase	NA
UHGV-0017139_33	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0017139_34	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0017139_34	UniRef90	UniRef90_A0A6N8H2D2	Helix-turn-helix domain-containing protein	NA
UHGV-0017139_34	eggNOG-mapper	411471.SUBVAR_05835	Helix-turn-helix domain	NA
UHGV-0017139_34	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0017139_34	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0017139_34	Structural annotation	PF13730, MF_01909, TIGR04176, COG3355	NA	NA
UHGV-0017139_35	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0017139_35	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0017139_35	UniRef90	UniRef90_A0A6N8H0I4	Single-stranded DNA-binding protein	NA
UHGV-0017139_35	eggNOG-mapper	411471.SUBVAR_04646	Single-stranded DNA-binding protein	NA
UHGV-0017139_35	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0017139_35	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0017139_35	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0017139_35	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0017139_35	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0017139_36	PHROG	phrog_1029	NA	unknown function
UHGV-0017139_36	eggNOG-mapper	411471.SUBVAR_05833	NA	NA
UHGV-0017139_36	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0017139_37	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0017139_37	UniRef90	UniRef90_A0A316QIB2	Replication terminator protein	NA
UHGV-0017139_37	eggNOG-mapper	411471.SUBVAR_05832	NA	NA
UHGV-0017139_38	PHROG	phrog_7566	NA	unknown function
UHGV-0017139_38	eggNOG-mapper	411471.SUBVAR_05830	NA	NA
UHGV-0017139_39	eggNOG-mapper	1156937.MFUM_90007	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes	NA
UHGV-0017139_39	COG	COG1327	Transcriptional regulator NrdR, contains Zn-ribbon and ATP-cone domains	NA
UHGV-0017139_39	Structural annotation	PF04606, NF007241	NA	NA
UHGV-0017139_40	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0017139_40	eggNOG-mapper	411471.SUBVAR_05829	NA	NA
UHGV-0017139_40	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0017139_41	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0017139_42	PHROG	phrog_10280	NA	unknown function
UHGV-0017139_42	eggNOG-mapper	1211640.K4JWC4_9CAUD	NA	NA
UHGV-0017139_45	PHROG	phrog_2232	NA	unknown function
UHGV-0017139_45	UniRef90	UniRef90_UPI00164B82D7	NA	NA
UHGV-0017139_45	eggNOG-mapper	748224.HMPREF9436_01448	NA	NA
UHGV-0017139_45	Pfam	PF14337	Abortive infection alpha	Abi_alpha
UHGV-0017139_45	Structural annotation	PF14337, TIGR03899	NA	NA
UHGV-0017139_47	UniRef90	UniRef90_A0A372V3V8	XRE family transcriptional regulator	NA
UHGV-0017139_47	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0017139_47	Structural annotation	PF10078, NF040507, COG3655	NA	NA
UHGV-0017139_48	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0017139_48	UniRef90	UniRef90_A0A372V3Y4	XRE family transcriptional regulator	NA
UHGV-0017139_48	eggNOG-mapper	411483.FAEPRAA2165_00756	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0017139_48	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0017139_48	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0017139_48	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0017139_49	PHROG	phrog_87	metallo-protease	other
UHGV-0017139_49	UniRef90	UniRef90_A0A329UQ57	Peptidase_M78 domain-containing protein	NA
UHGV-0017139_49	eggNOG-mapper	1507.HMPREF0262_00423	IrrE N-terminal-like domain	NA
UHGV-0017139_49	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0017139_49	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0017139_50	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-0017139_50	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-0017139_50	UniRef90	UniRef90_A0A6N2Y828	DNA polymerase III PolC-type	NA
UHGV-0017139_50	eggNOG-mapper	1042156.CXIVA_07100	EXOIII	NA
UHGV-0017139_50	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-0017139_50	Pfam	PF00929	Exonuclease	RNase_T
UHGV-0017139_50	NCBIFam	TIGR00573.1	exonuclease, DNA polymerase III, epsilon subunit family	NA
UHGV-0017139_50	COG	COG2176	DNA polymerase III, alpha subunit (gram-positive type)	NA