UHGV-0017323

Genome information

vOTU vOTU-071967

Genome length 46,880 bps

CDS count 66

Completeness 99.90% (high-quality)

geNomad score 0.9727

Prediction confidence Confident

Genome information
Genome ID	UHGV-0017323
vOTU ID	vOTU-071967
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-A-D_H_2_1640__NODE_1964_length_46880_cov_10.861227
BioSample	SAMEA4765921
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9727
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	14.36
Jumbo phage	No

Genome content
Genome length	46,880 bps
GC content	41.44%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	66
CDS density	90.87%
Average CDS length	650.05 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0017323_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0017323_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0017323_1	UniRef90	UniRef90_A7B3P5	Resolvase, N-terminal domain protein	NA
UHGV-0017323_1	eggNOG-mapper	411470.RUMGNA_02175	Resolvase, N terminal domain	NA
UHGV-0017323_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0017323_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-0017323_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0017323_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0017323_1	Structural annotation	PF00239, NF041201, COG1961	NA	NA
UHGV-0017323_2	eggNOG-mapper	1235792.C808_00051	NA	NA
UHGV-0017323_4	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0017323_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0017323_4	UniRef90	UniRef90_A0A3D4RBY0	XRE family transcriptional regulator	NA
UHGV-0017323_4	eggNOG-mapper	642492.Clole_0718	DNA-binding helix-turn-helix protein	NA
UHGV-0017323_4	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0017323_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0017323_4	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0017323_5	eggNOG-mapper	97139.C824_00052	NA	NA
UHGV-0017323_6	PHROG	phrog_750	NA	unknown function
UHGV-0017323_6	eggNOG-mapper	97139.C824_00051	NA	NA
UHGV-0017323_6	Structural annotation	PF13835, NF040858	NA	NA
UHGV-0017323_14	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0017323_14	eggNOG-mapper	1291050.JAGE01000001_gene483	NA	NA
UHGV-0017323_14	Structural annotation	PF21578	NA	NA
UHGV-0017323_15	UniRef90	UniRef90_A0A564VJZ8	Ribonuclease H	NA
UHGV-0017323_15	eggNOG-mapper	411461.DORFOR_01140	RNA-DNA hybrid ribonuclease activity	NA
UHGV-0017323_15	COG	COG0328	Ribonuclease HI	NA
UHGV-0017323_15	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0017323_17	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0017323_17	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0017323_17	UniRef90	UniRef90_A0A1C5REE7	Sporulation initiation inhibitor protein soj	NA
UHGV-0017323_17	eggNOG-mapper	97139.C824_00725	Cellulose biosynthesis protein BcsQ	NA
UHGV-0017323_17	Pfam	PF13614	AAA domain	AAA_31
UHGV-0017323_17	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0017323_17	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0017323_18	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0017323_18	PHROG	phrog_15077	NA	unknown function
UHGV-0017323_18	UniRef90	UniRef90_A0A1C5VK28	ParB-like nuclease domain	NA
UHGV-0017323_18	eggNOG-mapper	742765.HMPREF9457_02110	NA	NA
UHGV-0017323_18	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0017323_18	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0017323_19	PHROG	phrog_17690	NA	unknown function
UHGV-0017323_19	UniRef90	UniRef90_A0A6L5XWF4	3-dehydroquinate synthase	NA
UHGV-0017323_19	eggNOG-mapper	33035.JPJF01000123_gene2433	NA	NA
UHGV-0017323_21	eggNOG-mapper	1235798.C817_05493	NA	NA
UHGV-0017323_22	UniRef90	UniRef90_UPI000CDAB14C	winged helix-turn-helix transcriptional regulator	NA
UHGV-0017323_22	eggNOG-mapper	138119.DSY1577	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0017323_22	Pfam	PF01726	LexA DNA binding domain	LexA_DNA_bind
UHGV-0017323_22	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0017323_22	Structural annotation	PF01726, MF_00732, TIGR00738, COG3388	NA	NA
UHGV-0017323_23	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0017323_23	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0017323_23	UniRef90	UniRef90_UPI0004101F09	single-stranded DNA-binding protein	NA
UHGV-0017323_23	eggNOG-mapper	457412.RSAG_03244	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0017323_23	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0017323_23	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0017323_23	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0017323_23	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0017323_23	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0017323_26	eggNOG-mapper	1235799.C818_02650	NA	NA
UHGV-0017323_27	PHROG	phrog_4601	NA	unknown function
UHGV-0017323_27	Structural annotation	PF17888	NA	NA
UHGV-0017323_29	PHROG	phrog_10867	NA	unknown function
UHGV-0017323_29	eggNOG-mapper	411459.RUMOBE_01751	NA	NA
UHGV-0017323_31	PHROG	phrog_3205	NA	unknown function
UHGV-0017323_31	UniRef90	UniRef90_E6EWD7	EF-hand domain-containing protein	NA
UHGV-0017323_31	eggNOG-mapper	1158602.I590_02965	NA	NA
UHGV-0017323_32	PHROG	phrog_19515	NA	unknown function
UHGV-0017323_32	eggNOG-mapper	457412.RSAG_01163	NA	NA
UHGV-0017323_33	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0017323_33	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0017323_33	UniRef90	UniRef90_A0A373NRP8	MazG domain-containing protein	NA
UHGV-0017323_33	eggNOG-mapper	1235793.C809_03767	Helix-turn-helix XRE-family like proteins	NA
UHGV-0017323_33	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0017323_33	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0017323_33	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0017323_33	Structural annotation	PF01381, PF12643, MF_00535, NF041951, COG1476, COG1694	NA	NA
UHGV-0017323_34	PHROG	phrog_19490	NA	unknown function
UHGV-0017323_34	UniRef90	UniRef90_UPI001C028C57	glutathione peroxidase	NA
UHGV-0017323_35	PHROG	phrog_7566	NA	unknown function
UHGV-0017323_35	eggNOG-mapper	97139.C824_00037	NA	NA
UHGV-0017323_37	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0017323_37	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0017323_37	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0017323_37	Structural annotation	PF04545, MF_00674, NF009180, COG1342	NA	NA
UHGV-0017323_38	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0017323_38	UniRef90	UniRef90_A0A174XSZ8	Prophage LambdaBa04, GP54	NA
UHGV-0017323_38	eggNOG-mapper	318464.IO99_13775	HNH nucleases	NA
UHGV-0017323_38	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0017323_39	PHROG	phrog_1066	NA	unknown function
UHGV-0017323_39	eggNOG-mapper	1235793.C809_01916	NA	NA
UHGV-0017323_39	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0017323_40	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0017323_40	UniRef90	UniRef90_UPI00148AEB9A	terminase large subunit	NA
UHGV-0017323_40	eggNOG-mapper	1235793.C809_01917	Phage Terminase	NA
UHGV-0017323_40	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0017323_40	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0017323_40	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0017323_40	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0017323_41	PHROG	phrog_12	portal protein	head and packaging
UHGV-0017323_41	UniRef90	UniRef90_A0A1C6K9V7	Phage portal protein, HK97 family	NA
UHGV-0017323_41	eggNOG-mapper	1235793.C809_01918	Phage portal protein	NA
UHGV-0017323_41	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0017323_41	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0017323_41	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0017323_42	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0017323_42	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0017323_42	UniRef90	UniRef90_A0A4Q7PKT6	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0017323_42	eggNOG-mapper	1235793.C809_01919	Clp protease	NA
UHGV-0017323_42	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0017323_42	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0017323_42	Structural annotation	PF00574, MF_00444, NF011091, COG0740	NA	NA
UHGV-0017323_43	PHROG	phrog_10	major head protein	head and packaging
UHGV-0017323_43	UniRef90	UniRef90_A0A1C6KA65	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0017323_43	eggNOG-mapper	1235793.C809_01920	Phage capsid family	NA
UHGV-0017323_43	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0017323_43	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0017323_43	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0017323_43	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0017323_44	PHROG	phrog_5223	neck protein	connector
UHGV-0017323_44	UniRef90	UniRef90_UPI0019613678	head-tail connector protein	NA
UHGV-0017323_44	eggNOG-mapper	573061.Clocel_2435	NA	NA
UHGV-0017323_45	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0017323_45	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0017323_45	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0017323_46	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0017323_46	UniRef90	UniRef90_UPI001D07550A	HK97 gp10 family phage protein	NA
UHGV-0017323_46	eggNOG-mapper	411459.RUMOBE_00932	Phage protein, HK97 gp10 family	NA
UHGV-0017323_46	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0017323_46	Structural annotation	TIGR01725	NA	NA
UHGV-0017323_47	PHROG	phrog_78	tail terminator	connector
UHGV-0017323_47	eggNOG-mapper	293826.Amet_4023	NA	NA
UHGV-0017323_47	Structural annotation	PF05657	NA	NA
UHGV-0017323_48	PHROG	phrog_88	major tail protein	tail
UHGV-0017323_48	UniRef90	UniRef90_N1ZV08	Phi13 family phage major tail protein	NA
UHGV-0017323_48	eggNOG-mapper	97139.C824_05965	NA	NA
UHGV-0017323_48	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0017323_48	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0017323_49	eggNOG-mapper	97139.C824_05964	NA	NA
UHGV-0017323_49	Structural annotation	PF11836	NA	NA
UHGV-0017323_50	KOfam	K10398	KIF11, EG5; kinesin family member 11	NA
UHGV-0017323_50	PHROG	phrog_5218	NA	unknown function
UHGV-0017323_50	UniRef90	UniRef90_UPI000CDB7328	phage tail tape measure protein	NA
UHGV-0017323_50	eggNOG-mapper	1235792.C808_03050	Phage-related minor tail protein	NA
UHGV-0017323_50	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0017323_50	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0017323_50	Structural annotation	PF10145, PF05384, NF033930, COG5280	NA	NA
UHGV-0017323_51	PHROG	phrog_1194	NA	unknown function
UHGV-0017323_51	Pfam	PF20458	NA	DUF6711
UHGV-0017323_51	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0017323_52	PHROG	phrog_18190	NA	unknown function
UHGV-0017323_52	UniRef90	UniRef90_UPI000E4C0A8F	bacterial Ig-like domain-containing protein	NA
UHGV-0017323_52	eggNOG-mapper	946235.CAER01000065_gene2432	NA	NA
UHGV-0017323_52	Pfam	PF07523	Bacterial Ig-like domain (group 3)	Big_3
UHGV-0017323_52	Pfam	PF13306	BspA type Leucine rich repeat region (6 copies)	LRR_5
UHGV-0017323_52	Structural annotation	PF13306, PF07523, PF05113, NF033848, NF040978, COG3500	NA	NA
UHGV-0017323_53	Structural annotation	PF10395, MF_03022, NF037948, COG4257	NA	NA
UHGV-0017323_55	eggNOG-mapper	1160721.RBI_I01569	NA	NA
UHGV-0017323_55	Pfam	PF19789	NA	DUF6273
UHGV-0017323_55	Structural annotation	PF19789	NA	NA
UHGV-0017323_57	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0017323_57	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0017323_57	UniRef90	UniRef90_A0A413B1B6	Reverse transcriptase domain-containing protein	NA
UHGV-0017323_57	eggNOG-mapper	1160721.RBI_I01568	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0017323_57	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0017323_57	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0017323_57	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0017323_57	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-0017323_59	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0017323_60	eggNOG-mapper	457412.RSAG_04673	NA	NA
UHGV-0017323_61	PHROG	phrog_4105	NA	unknown function
UHGV-0017323_61	eggNOG-mapper	397288.C806_00056	NA	NA
UHGV-0017323_62	PHROG	phrog_18218	NA	unknown function
UHGV-0017323_62	UniRef90	UniRef90_UPI00093034BA	ribonuclease	NA
UHGV-0017323_62	eggNOG-mapper	411459.RUMOBE_00910	NA	NA
UHGV-0017323_62	Structural annotation	PF06946	NA	NA
UHGV-0017323_63	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0017323_63	PHROG	phrog_670	endolysin	lysis
UHGV-0017323_63	UniRef90	UniRef90_UPI000E432ED8	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0017323_63	eggNOG-mapper	411459.RUMOBE_00909	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-0017323_63	Pfam	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
UHGV-0017323_63	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0017323_63	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0017323_63	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0017323_63	Structural annotation	PF01832, NF008758, NF009354, COG5632, COG4193	NA	NA
UHGV-0017323_64	PHROG	phrog_25567	NA	unknown function
UHGV-0017323_64	eggNOG-mapper	1321782.HMPREF1986_01432	Helix-turn-helix	NA
UHGV-0017323_64	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-0017323_64	Structural annotation	PF01381, NF040522, COG2944	NA	NA
UHGV-0017323_65	eggNOG-mapper	411470.RUMGNA_03785	NA	NA
UHGV-0017323_65	AcrCatalog	cluster_81672	NA	NA
UHGV-0017323_66	eggNOG-mapper	1121115.AXVN01000063_gene714	NA	NA
UHGV-0017323_66	Pfam	PF09084	NMT1/THI5 like	NMT1
UHGV-0017323_66	COG	COG0715	ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component	NA