UHGV-0017664

Genome information

Genome length 35,209 bps

CDS count 48

Completeness 99.62% (high-quality)

geNomad score 0.9807

Prediction confidence Confident

Genome information
Genome ID	UHGV-0017664
vOTU ID	vOTU-074645
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-A-D_H_5_1561__NODE_1303_length_35209_cov_4.659257
BioSample	NA
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.62% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9807
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	49.95
Jumbo phage	No

Genome content
Genome length	35,209 bps
GC content	43.57%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	89.25%
Average CDS length	657.38 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0017664_2	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0017664_2	PHROG	phrog_95	integrase	integration and excision
UHGV-0017664_2	UniRef90	UniRef90_A0A374JP43	Recombinase family protein	NA
UHGV-0017664_2	eggNOG-mapper	411468.CLOSCI_00582	Recombinase	NA
UHGV-0017664_2	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0017664_2	Pfam	PF07508	Recombinase	Recombinase
UHGV-0017664_2	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0017664_2	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0017664_2	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0017664_3	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-0017664_3	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-0017664_3	UniRef90	UniRef90_UPI001E42ABDA	ribonuclease H-like domain-containing protein	NA
UHGV-0017664_3	eggNOG-mapper	537013.CLOSTMETH_02498	EXOIII	NA
UHGV-0017664_3	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-0017664_3	Pfam	PF00929	Exonuclease	RNase_T
UHGV-0017664_3	Pfam	PF00533	BRCA1 C Terminus (BRCT) domain	BRCT
UHGV-0017664_3	NCBIFam	TIGR00573.1	exonuclease, DNA polymerase III, epsilon subunit family	NA
UHGV-0017664_3	COG	COG0272	NAD-dependent DNA ligase	NA
UHGV-0017664_3	Structural annotation	PF00929, PF00533, MF_00157, NF005289, COG0847, COG5275	NA	NA
UHGV-0017664_4	UniRef90	UniRef90_UPI00189EDAF9	helix-turn-helix transcriptional regulator	NA
UHGV-0017664_4	eggNOG-mapper	1226325.HMPREF1548_06747	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0017664_4	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0017664_7	UniRef90	UniRef90_A0A374JR06	DNA-binding protein	NA
UHGV-0017664_7	eggNOG-mapper	1226325.HMPREF1548_06746	NA	NA
UHGV-0017664_8	Structural annotation	PF13058	NA	NA
UHGV-0017664_11	eggNOG-mapper	411468.CLOSCI_00572	NA	NA
UHGV-0017664_13	PHROG	phrog_20014	NA	unknown function
UHGV-0017664_13	eggNOG-mapper	1235798.C817_02590	NA	NA
UHGV-0017664_14	PHROG	phrog_2044	RNA polymerase beta subunit	DNA, RNA and nucleotide metabolism
UHGV-0017664_14	UniRef90	UniRef90_A0A0J5IUV0	Phage-like protein	NA
UHGV-0017664_14	eggNOG-mapper	552396.HMPREF0863_02432	NA	NA
UHGV-0017664_14	Structural annotation	MF_00337, NF010671, COG1722	NA	NA
UHGV-0017664_15	PHROG	phrog_1891	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0017664_15	UniRef90	UniRef90_C4ZC58	HNHc domain-containing protein	NA
UHGV-0017664_15	eggNOG-mapper	1282664.H354_06526	HNH endonuclease	NA
UHGV-0017664_15	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0017664_15	Structural annotation	PF13392	NA	NA
UHGV-0017664_16	PHROG	phrog_25385	NA	unknown function
UHGV-0017664_16	eggNOG-mapper	411468.CLOSCI_00565	NA	NA
UHGV-0017664_18	PHROG	phrog_24386	NA	unknown function
UHGV-0017664_18	eggNOG-mapper	411468.CLOSCI_00562	COG NOG28949 non supervised orthologous group	NA
UHGV-0017664_18	COG	COG0241	Histidinol phosphatase/D-glycero-mannoheptose bisphosphatephosphatase, HAD superfamily	NA
UHGV-0017664_18	Structural annotation	TIGR01689, COG0241	NA	NA
UHGV-0017664_21	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0017664_21	eggNOG-mapper	411468.CLOSCI_00558	NA	NA
UHGV-0017664_21	Structural annotation	PF21578	NA	NA
UHGV-0017664_22	PHROG	phrog_824	NA	unknown function
UHGV-0017664_22	UniRef90	UniRef90_A0A374JR68	VRR-NUC domain-containing protein	NA
UHGV-0017664_22	eggNOG-mapper	411468.CLOSCI_00556	VRR_NUC	NA
UHGV-0017664_22	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0017664_23	eggNOG-mapper	411468.CLOSCI_00554	NA	NA
UHGV-0017664_24	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0017664_24	UniRef90	UniRef90_A0A374JQS6	HNH endonuclease	NA
UHGV-0017664_24	eggNOG-mapper	411468.CLOSCI_00553	HNH endonuclease	NA
UHGV-0017664_24	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0017664_25	PHROG	phrog_1066	NA	unknown function
UHGV-0017664_25	eggNOG-mapper	411902.CLOBOL_03883	NA	NA
UHGV-0017664_26	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0017664_26	UniRef90	UniRef90_A0A374JP15	Terminase large subunit	NA
UHGV-0017664_26	eggNOG-mapper	411468.CLOSCI_00551	COG COG4626 Phage terminase-like protein, large subunit	NA
UHGV-0017664_26	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0017664_26	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0017664_26	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0017664_26	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0017664_27	PHROG	phrog_12	portal protein	head and packaging
UHGV-0017664_27	UniRef90	UniRef90_A0A374JP76	Phage portal protein	NA
UHGV-0017664_27	eggNOG-mapper	411468.CLOSCI_00550	Phage portal protein	NA
UHGV-0017664_27	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0017664_27	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0017664_27	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0017664_28	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0017664_28	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0017664_28	UniRef90	UniRef90_A0A374JQH6	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0017664_28	eggNOG-mapper	411468.CLOSCI_00549	COG COG0740 Protease subunit of ATP-dependent Clp proteases	NA
UHGV-0017664_28	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0017664_28	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0017664_28	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0017664_29	PHROG	phrog_10	major head protein	head and packaging
UHGV-0017664_29	UniRef90	UniRef90_A0A374JNW0	Phage major capsid protein	NA
UHGV-0017664_29	eggNOG-mapper	411468.CLOSCI_00548	Phage capsid family	NA
UHGV-0017664_29	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0017664_29	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0017664_29	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0017664_30	PHROG	phrog_5223	neck protein	connector
UHGV-0017664_30	UniRef90	UniRef90_A0A174XIL0	NA	NA
UHGV-0017664_30	eggNOG-mapper	411468.CLOSCI_00547	NA	NA
UHGV-0017664_31	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0017664_31	UniRef90	UniRef90_UPI001C00E12E	HK97 gp10 family phage protein	NA
UHGV-0017664_31	eggNOG-mapper	457421.CBFG_03712	NA	NA
UHGV-0017664_31	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0017664_32	eggNOG-mapper	411468.CLOSCI_00544	NA	NA
UHGV-0017664_32	Structural annotation	PF20765	NA	NA
UHGV-0017664_33	PHROG	phrog_2175	protein with Ig domain	other
UHGV-0017664_33	eggNOG-mapper	411468.CLOSCI_00543	NA	NA
UHGV-0017664_33	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0017664_34	eggNOG-mapper	411468.CLOSCI_00542	NA	NA
UHGV-0017664_34	Structural annotation	PF17388	NA	NA
UHGV-0017664_35	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0017664_35	UniRef90	UniRef90_A0A374JNY3	PhageMin_Tail domain-containing protein	NA
UHGV-0017664_35	eggNOG-mapper	588581.Cpap_1264	Tail tape measure protein, TP901 family	NA
UHGV-0017664_35	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0017664_35	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0017664_35	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0017664_36	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0017664_36	UniRef90	UniRef90_UPI00164BA811	phage tail family protein	NA
UHGV-0017664_36	eggNOG-mapper	1567011.A0A0A7RWN1_9VIRU	Phage tail protein	NA
UHGV-0017664_36	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0017664_36	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0017664_37	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0017664_37	UniRef90	UniRef90_UPI00189EFADE	phage tail protein	NA
UHGV-0017664_37	eggNOG-mapper	1160721.RBI_I01574	Prophage endopeptidase tail	NA
UHGV-0017664_37	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0017664_37	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0017664_37	COG	COG4926	Phage-related protein	NA
UHGV-0017664_37	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0017664_40	PHROG	phrog_19280	NA	unknown function
UHGV-0017664_40	UniRef90	UniRef90_UPI0018A009CA	BppU family phage baseplate upper protein	NA
UHGV-0017664_40	eggNOG-mapper	537013.CLOSTMETH_03776	NA	NA
UHGV-0017664_40	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0017664_40	Structural annotation	PF10651, NF010435	NA	NA
UHGV-0017664_41	PHROG	phrog_5302	tail protein	tail
UHGV-0017664_41	eggNOG-mapper	411468.CLOSCI_01504	NA	NA
UHGV-0017664_41	Structural annotation	COG1262	NA	NA
UHGV-0017664_43	PHROG	phrog_20201	NA	unknown function
UHGV-0017664_44	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0017664_44	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0017664_45	eggNOG-mapper	742733.HMPREF9469_01798	NA	NA
UHGV-0017664_46	PHROG	phrog_263	holin	lysis
UHGV-0017664_46	UniRef90	UniRef90_R6GD40	Holin SPP1 family	NA
UHGV-0017664_46	eggNOG-mapper	764291.STRUR_2085	SPP1 phage holin	NA
UHGV-0017664_46	Pfam	PF04688	SPP1 phage holin	Holin_SPP1
UHGV-0017664_46	NCBIFam	TIGR01592.1	phage holin	NA
UHGV-0017664_46	Structural annotation	PF04688, TIGR01592	NA	NA
UHGV-0017664_47	KOfam	K07273	acm; lysozyme	NA
UHGV-0017664_47	PHROG	phrog_291	endolysin	lysis
UHGV-0017664_47	UniRef90	UniRef90_A0A374JNX4	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-0017664_47	eggNOG-mapper	521003.COLINT_02363	CW_7 repeat	NA
UHGV-0017664_47	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0017664_47	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0017664_47	Pfam	PF01476	LysM domain	LysM
UHGV-0017664_47	COG	COG1388	LysM repeat	NA
UHGV-0017664_47	Structural annotation	PF01183, PF01476, TIGR02899, COG3757, COG1388	NA	NA
UHGV-0017664_48	UniRef90	UniRef90_A0A3D2X9C1	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB (Fragment)	NA
UHGV-0017664_48	eggNOG-mapper	537007.BLAHAN_04736	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine	NA
UHGV-0017664_48	Pfam	PF00919	NA	UPF0004
UHGV-0017664_48	COG	COG0621	tRNA A37 methylthiotransferase MiaB	NA