UHGV-0017780

Genome information

Genome length 44,505 bps

CDS count 62

Completeness 60.13% (medium-quality)

geNomad score 0.9767

Prediction confidence Confident

Genome information
Genome ID	UHGV-0017780
vOTU ID	vOTU-030391
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-A-D_F_2_1628__NODE_2006_length_44505_cov_28.602458
BioSample	NA
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	60.13% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9767
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.47
Jumbo phage	No

Genome content
Genome length	44,505 bps
GC content	43.11%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	62
CDS density	88.53%
Average CDS length	638.37 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0017780_1	KOfam	K13730	inlA; internalin A	NA
UHGV-0017780_1	Pfam	PF12799	Leucine Rich repeats (2 copies)	LRR_4
UHGV-0017780_2	PHROG	phrog_27151	NA	unknown function
UHGV-0017780_2	UniRef90	UniRef90_UPI0013D1DF92	CotH kinase family protein	NA
UHGV-0017780_2	eggNOG-mapper	1233951.IO90_08605	CotH kinase protein	NA
UHGV-0017780_2	Pfam	PF08757	CotH kinase protein	CotH
UHGV-0017780_2	Structural annotation	PF08757, COG5337	NA	NA
UHGV-0017780_3	PHROG	phrog_13518	NA	unknown function
UHGV-0017780_3	Structural annotation	COG5456	NA	NA
UHGV-0017780_4	Structural annotation	PF17994	NA	NA
UHGV-0017780_5	PHROG	phrog_22135	NA	unknown function
UHGV-0017780_5	Structural annotation	PF17212	NA	NA
UHGV-0017780_7	PHROG	phrog_26635	NA	unknown function
UHGV-0017780_7	Structural annotation	PF17236, MF_04133, TIGR01554, COG4653	NA	NA
UHGV-0017780_8	PHROG	phrog_22323	NA	unknown function
UHGV-0017780_9	PHROG	phrog_156	portal protein	head and packaging
UHGV-0017780_9	eggNOG-mapper	1121098.HMPREF1534_01127	NA	NA
UHGV-0017780_9	Structural annotation	PF16510, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0017780_11	Structural annotation	PF02368	NA	NA
UHGV-0017780_14	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0017780_14	UniRef90	UniRef90_UPI00192482D4	terminase	NA
UHGV-0017780_14	eggNOG-mapper	1347393.HG726020_gene1832	Mu-like prophage FluMu protein gp28	NA
UHGV-0017780_14	COG	COG4373	Mu-like prophage FluMu protein gp28	NA
UHGV-0017780_14	Structural annotation	PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0017780_15	UniRef90	UniRef90_A0A3R6M5X3	DNA-binding protein	NA
UHGV-0017780_15	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0017780_15	Structural annotation	PF05930, TIGR01764, COG3311	NA	NA
UHGV-0017780_16	eggNOG-mapper	679190.HMPREF0650_1967	NA	NA
UHGV-0017780_17	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0017780_17	PHROG	phrog_822	amidase	lysis
UHGV-0017780_17	UniRef90	UniRef90_A0A646FVZ2	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0017780_17	eggNOG-mapper	888832.HMPREF9420_0424	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0017780_17	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0017780_17	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0017780_17	Structural annotation	PF01510, MF_04111, NF008758, COG3023	NA	NA
UHGV-0017780_18	PHROG	phrog_20732	NA	unknown function
UHGV-0017780_18	UniRef90	UniRef90_A0A6G7X1I7	Phage holin family protein	NA
UHGV-0017780_18	eggNOG-mapper	742727.HMPREF9447_04857	NA	NA
UHGV-0017780_18	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0017780_20	PHROG	phrog_27246	NA	unknown function
UHGV-0017780_21	UniRef90	UniRef90_UPI001F1CD6B6	rhomboid family intramembrane serine protease	NA
UHGV-0017780_21	Pfam	PF01694	Rhomboid family	Rhomboid
UHGV-0017780_21	Structural annotation	PF01694, MF_01594, NF008155, COG0705	NA	NA
UHGV-0017780_23	PHROG	phrog_32516	NA	unknown function
UHGV-0017780_23	eggNOG-mapper	679191.HMPREF9018_0439	NA	NA
UHGV-0017780_23	Structural annotation	PF11134, COG2706	NA	NA
UHGV-0017780_25	PHROG	phrog_8684	NA	unknown function
UHGV-0017780_25	UniRef90	UniRef90_UPI001C38350F	YopX family protein	NA
UHGV-0017780_25	eggNOG-mapper	762968.HMPREF9441_00543	YopX protein	NA
UHGV-0017780_25	Pfam	PF09643	YopX protein	YopX
UHGV-0017780_25	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0017780_30	PHROG	phrog_918	NA	unknown function
UHGV-0017780_30	UniRef90	UniRef90_UPI001E4BD730	NA	NA
UHGV-0017780_30	eggNOG-mapper	411473.RUMCAL_00361	NA	NA
UHGV-0017780_30	Pfam	PF19791	NA	DUF6275
UHGV-0017780_30	Structural annotation	PF19791	NA	NA
UHGV-0017780_35	Structural annotation	PF20338	NA	NA
UHGV-0017780_36	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0017780_36	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0017780_37	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0017780_38	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0017780_38	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0017780_38	UniRef90	UniRef90_A0A646FRH1	Lactamase_B domain-containing protein	NA
UHGV-0017780_38	eggNOG-mapper	1227276.HMPREF9148_00129	NA	NA
UHGV-0017780_38	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0017780_38	dbAPIS	APIS058	NA	NA
UHGV-0017780_38	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0017780_38	Structural annotation	PF02112, MF_00653, TIGR03307, COG1234	NA	NA
UHGV-0017780_39	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0017780_39	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0017780_39	UniRef90	UniRef90_A0A3R6HTW1	Recombinase	NA
UHGV-0017780_39	eggNOG-mapper	679935.Alfi_0526	Recombinase, phage RecT family	NA
UHGV-0017780_39	Pfam	PF03837	RecT family	RecT
UHGV-0017780_39	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0017780_39	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0017780_39	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0017780_41	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0017780_41	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0017780_41	UniRef90	UniRef90_A0A3R6HGN7	AAA_15 domain-containing protein	NA
UHGV-0017780_41	eggNOG-mapper	1392486.JIAF01000004_gene2636	AAA domain	NA
UHGV-0017780_41	Pfam	PF13476	AAA domain	AAA_23
UHGV-0017780_41	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0017780_41	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0017780_43	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0017780_43	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0017780_43	UniRef90	UniRef90_A0A646FRN8	dUTPase domain-containing protein	NA
UHGV-0017780_43	eggNOG-mapper	66692.ABC2847	deoxyuridine 5'-triphosphate nucleotidohydrolase	NA
UHGV-0017780_43	Pfam	PF00692	dUTPase	dUTPase
UHGV-0017780_43	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0017780_43	Structural annotation	PF00692, MF_00116, TIGR00576, COG0756	NA	NA
UHGV-0017780_44	Structural annotation	PF07258	NA	NA
UHGV-0017780_45	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0017780_45	UniRef90	UniRef90_UPI001897E143	NUMOD4 domain-containing protein	NA
UHGV-0017780_45	eggNOG-mapper	1123239.KB898628_gene3227	NUMOD4 motif	NA
UHGV-0017780_45	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0017780_45	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0017780_45	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0017780_45	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0017780_45	Pfam	PF13936	Helix-turn-helix domain	HTH_38
UHGV-0017780_46	PHROG	phrog_5034	NinG/ Rap DNA junction specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0017780_46	UniRef90	UniRef90_A0A415VFZ7	Recombinase	NA
UHGV-0017780_46	eggNOG-mapper	357276.EL88_11490	Bacteriophage Lambda NinG protein	NA
UHGV-0017780_46	Pfam	PF05766	Bacteriophage Lambda NinG protein	NinG
UHGV-0017780_46	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0017780_46	Structural annotation	PF05766	NA	NA
UHGV-0017780_50	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0017780_50	UniRef90	UniRef90_A0A415VG24	XRE family transcriptional regulator	NA
UHGV-0017780_50	eggNOG-mapper	886379.AEWI01000013_gene2144	Helix-turn-helix XRE-family like proteins	NA
UHGV-0017780_50	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0017780_50	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0017780_54	PHROG	phrog_625	NA	unknown function
UHGV-0017780_54	UniRef90	UniRef90_A0A3E5E2G2	ASCH domain-containing protein	NA
UHGV-0017780_54	eggNOG-mapper	1227266.HMPREF1551_00545	NA	NA
UHGV-0017780_54	Structural annotation	PF12961	NA	NA
UHGV-0017780_56	Structural annotation	PF01775, MF_00273, NF001981, COG2157	NA	NA
UHGV-0017780_57	KOfam	K17080	PHB1; prohibitin 1	NA
UHGV-0017780_57	PHROG	phrog_200	lipoprotein	other
UHGV-0017780_57	UniRef90	UniRef90_A0A3R6JV58	Prohibitin family protein	NA
UHGV-0017780_57	eggNOG-mapper	1122621.ATZA01000001_gene1899	stress-induced mitochondrial fusion	NA
UHGV-0017780_57	Pfam	PF01145	SPFH domain / Band 7 family	Band_7
UHGV-0017780_57	COG	COG0330	Regulator of protease activity HflC, stomatin/prohibitin superfamily	NA
UHGV-0017780_57	Structural annotation	PF01145, MF_01562, NF008181, COG0330	NA	NA
UHGV-0017780_59	PHROG	phrog_129	transcriptional regulator	transcription regulation
UHGV-0017780_59	UniRef90	UniRef90_UPI001F44A8CA	KilA-N domain-containing protein	NA
UHGV-0017780_59	eggNOG-mapper	1121100.JCM6294_529	KilA-N domain	NA
UHGV-0017780_59	Pfam	PF04383	KilA-N domain	KilA-N
UHGV-0017780_61	KOfam	K01173	ENDOG; endonuclease G, mitochondrial	NA
UHGV-0017780_61	PHROG	phrog_14168	nuclease	DNA, RNA and nucleotide metabolism
UHGV-0017780_61	UniRef90	UniRef90_UPI001EE44EA0	DNA/RNA non-specific endonuclease	NA
UHGV-0017780_61	eggNOG-mapper	537011.PREVCOP_05157	DNA RNA non-specific endonuclease	NA
UHGV-0017780_61	Pfam	PF01223	DNA/RNA non-specific endonuclease	Endonuclease_NS
UHGV-0017780_61	COG	COG1864	DNA/RNA endonuclease G, NUC1	NA
UHGV-0017780_62	UniRef90	UniRef90_UPI001C46FAA0	NA	NA
UHGV-0017780_62	Pfam	PF16128	NA	DUF4840