UHGV-0017946

Genome information

Genome length 29,540 bps

CDS count 50

Completeness 92.81% (high-quality)

geNomad score 0.9691

Prediction confidence Confident

Genome information
Genome ID	UHGV-0017946
vOTU ID	vOTU-072720
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-A-D_P_13_1506__NODE_1639_length_36854_cov_11.064089
BioSample	SAMEA4765798
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	92.81% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9691
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.41
Jumbo phage	No

Genome content
Genome length	29,540 bps
GC content	27.27%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	93.05%
Average CDS length	554.82 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0017946_1	KOfam	K02996	RP-S9, MRPS9, rpsI; small subunit ribosomal protein S9	NA
UHGV-0017946_1	UniRef90	UniRef90_A0A1Q6V1U0	30S ribosomal protein S9	NA
UHGV-0017946_1	eggNOG-mapper	1050201.KB913034_gene1372	Belongs to the universal ribosomal protein uS9 family	NA
UHGV-0017946_1	Pfam	PF00380	Ribosomal protein S9/S16	Ribosomal_S9
UHGV-0017946_1	COG	COG0103	Ribosomal protein S9	NA
UHGV-0017946_4	KOfam	K14059	int; integrase	NA
UHGV-0017946_4	PHROG	phrog_1	integrase	integration and excision
UHGV-0017946_4	UniRef90	UniRef90_R7F068	Site-specific recombinase phage integrase family	NA
UHGV-0017946_4	eggNOG-mapper	558169.AGAV01000001_gene3323	Phage integrase family	NA
UHGV-0017946_4	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0017946_4	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0017946_4	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0017946_6	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0017946_6	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0017946_6	UniRef90	UniRef90_R7EZW6	LexA repressor	NA
UHGV-0017946_6	eggNOG-mapper	1321820.HMPREF1983_00958	Helix-turn-helix XRE-family like proteins	NA
UHGV-0017946_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0017946_6	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0017946_6	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0017946_6	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0017946_7	UniRef90	UniRef90_A0A127EGR4	NA	NA
UHGV-0017946_7	eggNOG-mapper	1215915.BN193_09250	NA	NA
UHGV-0017946_7	Pfam	PF05339	NA	DUF739
UHGV-0017946_7	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0017946_7	Structural annotation	PF05339, NF002773, COG1476	NA	NA
UHGV-0017946_8	PHROG	phrog_6058	NA	unknown function
UHGV-0017946_8	UniRef90	UniRef90_A0A101WT85	Modification methylase SinI	NA
UHGV-0017946_8	eggNOG-mapper	1123288.SOV_2c10360	NA	NA
UHGV-0017946_8	Structural annotation	PF12728, TIGR01764	NA	NA
UHGV-0017946_10	PHROG	phrog_4973	NA	unknown function
UHGV-0017946_10	UniRef90	UniRef90_A0A3R6RL03	DNA-binding protein	NA
UHGV-0017946_10	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0017946_10	Structural annotation	PF14090, NF040939, COG4738	NA	NA
UHGV-0017946_12	PHROG	phrog_8489	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0017946_12	UniRef90	UniRef90_A0A0K8MHB1	DNA replication protein	NA
UHGV-0017946_12	eggNOG-mapper	762550.LEGAS_1609	DnaD domain protein	NA
UHGV-0017946_12	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0017946_12	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-0017946_14	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0017946_14	eggNOG-mapper	1095747.HMPREF1049_2015	NA	NA
UHGV-0017946_14	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0017946_14	Structural annotation	PF07374, MF_00674, NF001074	NA	NA
UHGV-0017946_18	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0017946_18	UniRef90	UniRef90_A0A315Y0X2	MazG-like nucleotide pyrophosphohydrolase family protein	NA
UHGV-0017946_21	PHROG	phrog_918	NA	unknown function
UHGV-0017946_21	UniRef90	UniRef90_UPI00115A7D93	NA	NA
UHGV-0017946_21	eggNOG-mapper	469618.FVAG_01307	NA	NA
UHGV-0017946_21	Pfam	PF19791	NA	DUF6275
UHGV-0017946_21	Structural annotation	PF19791	NA	NA
UHGV-0017946_22	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0017946_22	PHROG	phrog_216	integrase	integration and excision
UHGV-0017946_22	UniRef90	UniRef90_R7EZA3	Tyr recombinase domain-containing protein	NA
UHGV-0017946_22	eggNOG-mapper	1123298.KB904077_gene454	Integrase	NA
UHGV-0017946_22	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0017946_22	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0017946_22	Structural annotation	PF00589, MF_02055, NF040815, COG4973	NA	NA
UHGV-0017946_23	PHROG	phrog_4601	NA	unknown function
UHGV-0017946_25	Pfam	PF13873	Myb/SANT-like DNA-binding domain	Myb_DNA-bind_5
UHGV-0017946_31	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0017946_31	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0017946_31	UniRef90	UniRef90_R7EY52	HNHc domain-containing protein	NA
UHGV-0017946_31	eggNOG-mapper	1304866.K413DRAFT_1217	HNH nucleases	NA
UHGV-0017946_31	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0017946_32	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0017946_32	UniRef90	UniRef90_R7EZT4	Phage-related protein	NA
UHGV-0017946_32	eggNOG-mapper	1567010.A0A0A7RUA4_9VIRU	Phage terminase, small subunit	NA
UHGV-0017946_32	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0017946_32	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0017946_33	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0017946_33	UniRef90	UniRef90_R7F036	Putative terminase large subunit	NA
UHGV-0017946_33	eggNOG-mapper	1304866.K413DRAFT_1222	Terminase	NA
UHGV-0017946_33	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0017946_33	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0017946_33	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0017946_33	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0017946_34	PHROG	phrog_12	portal protein	head and packaging
UHGV-0017946_34	UniRef90	UniRef90_A0A075KQ80	Putative portal protein	NA
UHGV-0017946_34	eggNOG-mapper	1399942.U3PFW0_9CAUD	Phage portal protein	NA
UHGV-0017946_34	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0017946_34	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0017946_34	Structural annotation	PF04860, PF08184, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0017946_35	KOfam	K06904	NA	NA
UHGV-0017946_35	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0017946_35	UniRef90	UniRef90_R6GRF8	Phage prohead protease HK97 family	NA
UHGV-0017946_35	eggNOG-mapper	1414720.CBYM010000002_gene573	Phage prohead protease, HK97 family	NA
UHGV-0017946_35	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0017946_35	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0017946_35	COG	COG3740	Phage head maturation protease	NA
UHGV-0017946_35	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0017946_36	PHROG	phrog_10	major head protein	head and packaging
UHGV-0017946_36	UniRef90	UniRef90_A0A3A6HIE5	Phage major capsid protein	NA
UHGV-0017946_36	eggNOG-mapper	397288.C806_00073	phage major capsid protein, HK97 family	NA
UHGV-0017946_36	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0017946_36	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0017946_36	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0017946_36	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0017946_38	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0017946_38	UniRef90	UniRef90_A0A6P1MNU9	Phage gp6-like head-tail connector protein	NA
UHGV-0017946_38	eggNOG-mapper	1399942.U3PCS3_9CAUD	NA	NA
UHGV-0017946_38	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0017946_38	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0017946_38	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0017946_39	PHROG	phrog_25	head closure Hc1	connector
UHGV-0017946_39	UniRef90	UniRef90_A0A843I196	Phage head closure protein	NA
UHGV-0017946_39	eggNOG-mapper	508419.F8J165_9CAUD	Phage head-tail joining protein	NA
UHGV-0017946_39	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0017946_39	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0017946_39	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0017946_40	UniRef90	UniRef90_A0A843HUI9	HK97 gp10 family phage protein	NA
UHGV-0017946_40	eggNOG-mapper	1399942.U3PIW3_9CAUD	NA	NA
UHGV-0017946_40	Structural annotation	TIGR01725	NA	NA
UHGV-0017946_41	PHROG	phrog_78	tail terminator	connector
UHGV-0017946_41	eggNOG-mapper	1414720.CBYM010000005_gene1376	NA	NA
UHGV-0017946_41	Structural annotation	PF05657	NA	NA
UHGV-0017946_42	PHROG	phrog_88	major tail protein	tail
UHGV-0017946_42	eggNOG-mapper	1399942.U3PBH4_9CAUD	NA	NA
UHGV-0017946_42	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0017946_42	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0017946_43	PHROG	phrog_2115	tail protein	tail
UHGV-0017946_43	eggNOG-mapper	1399942.U3PCS7_9CAUD	NA	NA
UHGV-0017946_43	Structural annotation	PF11836	NA	NA
UHGV-0017946_44	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0017946_44	UniRef90	UniRef90_A0A847CTN4	Phage tail protein	NA
UHGV-0017946_44	eggNOG-mapper	536233.CLO_1577	tape measure	NA
UHGV-0017946_44	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0017946_44	Structural annotation	PF20155, COG5280	NA	NA
UHGV-0017946_45	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0017946_45	UniRef90	UniRef90_A0A843HQ16	Phage tail family protein	NA
UHGV-0017946_45	eggNOG-mapper	1408823.AXUS01000025_gene2633	phage tail	NA
UHGV-0017946_45	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0017946_45	COG	COG4722	Phage-related protein YomH	NA
UHGV-0017946_45	Structural annotation	PF05709, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0017946_46	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0017946_46	UniRef90	UniRef90_A0A2P1CCB3	Prophage_tail domain-containing protein	NA
UHGV-0017946_46	eggNOG-mapper	1399942.U3PFX4_9CAUD	peptidoglycan catabolic process	NA
UHGV-0017946_46	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0017946_46	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0017946_46	Structural annotation	PF14594, PF04862, TIGR01665, TIGR04362, COG4926	NA	NA
UHGV-0017946_47	PHROG	phrog_372	tail protein	tail
UHGV-0017946_47	UniRef90	UniRef90_A0A2U8UIA2	Minor tail protein	NA
UHGV-0017946_47	eggNOG-mapper	883114.HMPREF9709_01181	the current gene model (or a revised gene model) may contain a frame shift	NA
UHGV-0017946_47	COG	COG4675	Phage tail collar domain	NA
UHGV-0017946_47	Structural annotation	PF05895, PF00386, MF_04116, NF010681, COG1361	NA	NA
UHGV-0017946_48	PHROG	phrog_13632	NA	unknown function
UHGV-0017946_49	Structural annotation	PF06946	NA	NA
UHGV-0017946_50	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0017946_50	PHROG	phrog_7767	metallo-endopeptidase	other
UHGV-0017946_50	eggNOG-mapper	537007.BLAHAN_06340	NA	NA
UHGV-0017946_50	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0017946_50	COG	COG4942	Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB	NA