UHGV-0018027

Genome information

Genome length 30,168 bps

CDS count 42

Completeness 85.78% (medium-quality)

geNomad score 0.9802

Prediction confidence Confident

Genome information
Genome ID	UHGV-0018027
vOTU ID	vOTU-030578
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-A-D_F_2_1628__NODE_3580_length_30168_cov_9.293742
BioSample	NA
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	85.78% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9802
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.08
Jumbo phage	No

Genome content
Genome length	30,168 bps
GC content	58.50%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	42
CDS density	91.59%
Average CDS length	660.50 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0018027_1	KOfam	K14059	int; integrase	NA
UHGV-0018027_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0018027_1	UniRef90	UniRef90_A0A8F2JBJ7	Site-specific integrase	NA
UHGV-0018027_1	eggNOG-mapper	1507.HMPREF0262_00307	Phage integrase family	NA
UHGV-0018027_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0018027_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0018027_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0018027_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0018027_2	PHROG	phrog_17982	NA	unknown function
UHGV-0018027_2	eggNOG-mapper	1284686.HMPREF1630_01985	NA	NA
UHGV-0018027_2	Pfam	PF14020	NA	DUF4236
UHGV-0018027_3	UniRef90	UniRef90_A0A1Y4C9D7	HTH cro/C1-type domain-containing protein	NA
UHGV-0018027_3	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0018027_3	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0018027_3	Structural annotation	PF13443, NF041951, COG1396	NA	NA
UHGV-0018027_4	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0018027_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0018027_4	UniRef90	UniRef90_A0A645JJK5	HTH cro/C1-type domain-containing protein	NA
UHGV-0018027_4	eggNOG-mapper	1487953.JMKF01000091_gene5277	Helix-turn-helix domain	NA
UHGV-0018027_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0018027_4	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0018027_4	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0018027_5	Structural annotation	PF12728, NF040990	NA	NA
UHGV-0018027_6	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0018027_6	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0018027_6	UniRef90	UniRef90_UPI001C01DF91	helix-turn-helix transcriptional regulator	NA
UHGV-0018027_6	eggNOG-mapper	1226322.HMPREF1545_00092	Helix-turn-helix XRE-family like proteins	NA
UHGV-0018027_6	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0018027_6	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0018027_6	Structural annotation	PF01381, NF040522, COG1476	NA	NA
UHGV-0018027_7	PHROG	phrog_428	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0018027_7	UniRef90	UniRef90_UPI0002DD08A7	helix-turn-helix domain-containing protein	NA
UHGV-0018027_7	eggNOG-mapper	693746.OBV_19830	DnaD domain protein	NA
UHGV-0018027_7	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0018027_7	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0018027_7	Structural annotation	PF20714, MF_01177, NF040582, COG3355	NA	NA
UHGV-0018027_8	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0018027_8	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0018027_8	UniRef90	UniRef90_UPI00195856D7	AAA family ATPase	NA
UHGV-0018027_8	eggNOG-mapper	1226322.HMPREF1545_00095	DnaB-like helicase N terminal domain	NA
UHGV-0018027_8	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0018027_8	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0018027_8	COG	COG0305	Replicative DNA helicase	NA
UHGV-0018027_8	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0018027_10	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0018027_10	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0018027_10	UniRef90	UniRef90_UPI001BB48231	ParA family protein	NA
UHGV-0018027_10	eggNOG-mapper	1007096.BAGW01000011_gene2363	Anion-transporting ATPase	NA
UHGV-0018027_10	Pfam	PF13614	AAA domain	AAA_31
UHGV-0018027_10	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0018027_10	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0018027_11	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0018027_11	PHROG	phrog_27290	NA	unknown function
UHGV-0018027_11	UniRef90	UniRef90_UPI001BB4839F	ParB N-terminal domain-containing protein	NA
UHGV-0018027_11	eggNOG-mapper	1007096.BAGW01000033_gene1613	ParB-like nuclease domain	NA
UHGV-0018027_11	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0018027_11	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0018027_11	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0018027_11	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0018027_13	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0018027_13	UniRef90	UniRef90_UPI001C00B13F	DNA cytosine methyltransferase	NA
UHGV-0018027_13	eggNOG-mapper	748224.HMPREF9436_03069	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0018027_13	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0018027_14	UniRef90	UniRef90_A0A098GES5	Putative phage associated protein	NA
UHGV-0018027_14	Structural annotation	PF01423, MF_00257, NF001963, COG1958	NA	NA
UHGV-0018027_15	UniRef90	UniRef90_UPI0012AD39DD	leucine-rich repeat protein	NA
UHGV-0018027_16	UniRef90	UniRef90_Q5YA82	28	NA
UHGV-0018027_16	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0018027_17	PHROG	phrog_22543	NA	unknown function
UHGV-0018027_17	UniRef90	UniRef90_A0A8D9PDK2	Zinc-ribbon containing domain	NA
UHGV-0018027_20	eggNOG-mapper	445972.ANACOL_00168	NA	NA
UHGV-0018027_22	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0018027_22	eggNOG-mapper	693746.OBV_19950	NA	NA
UHGV-0018027_22	Structural annotation	PF21578	NA	NA
UHGV-0018027_23	UniRef90	UniRef90_A0A7X4ZJI5	Conjugal transfer protein	NA
UHGV-0018027_23	eggNOG-mapper	742738.HMPREF9460_00868	Cysteine-rich KTR	NA
UHGV-0018027_23	Pfam	PF14205	Cysteine-rich KTR	Cys_rich_KTR
UHGV-0018027_23	Structural annotation	PF14205, NF041070	NA	NA
UHGV-0018027_24	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0018027_24	UniRef90	UniRef90_A0A316P1K8	HNH endonuclease	NA
UHGV-0018027_24	eggNOG-mapper	588581.Cpap_1277	HNH nucleases	NA
UHGV-0018027_24	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0018027_24	Structural annotation	TIGR02646	NA	NA
UHGV-0018027_25	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0018027_25	UniRef90	UniRef90_A0A3D1VAR5	Terminase	NA
UHGV-0018027_25	eggNOG-mapper	1226322.HMPREF1545_00113	Phage Terminase	NA
UHGV-0018027_25	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0018027_25	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0018027_25	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0018027_25	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0018027_25	Structural annotation	PF03354, PF20441, PF05119, MF_04146, TIGR01547, TIGR01558, COG4626, COG3747	NA	NA
UHGV-0018027_26	PHROG	phrog_12	portal protein	head and packaging
UHGV-0018027_26	UniRef90	UniRef90_A0A3D1VH02	Phage portal protein	NA
UHGV-0018027_26	eggNOG-mapper	1121423.JONT01000042_gene1421	Phage portal protein, HK97 family	NA
UHGV-0018027_26	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0018027_26	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0018027_26	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0018027_26	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0018027_27	KOfam	K06904	NA	NA
UHGV-0018027_27	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0018027_27	UniRef90	UniRef90_A0A3D1VA27	HK97 family phage prohead protease	NA
UHGV-0018027_27	eggNOG-mapper	1235798.C817_04584	Phage prohead protease, HK97 family	NA
UHGV-0018027_27	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0018027_27	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0018027_27	COG	COG3740	Phage head maturation protease	NA
UHGV-0018027_27	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0018027_28	PHROG	phrog_10	major head protein	head and packaging
UHGV-0018027_28	UniRef90	UniRef90_A0A3D1VAZ0	Phage major capsid protein	NA
UHGV-0018027_28	eggNOG-mapper	642492.Clole_0744	phage major capsid protein, HK97 family	NA
UHGV-0018027_28	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0018027_28	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0018027_28	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0018027_28	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0018027_28	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0018027_29	PHROG	phrog_2550	NA	unknown function
UHGV-0018027_29	UniRef90	UniRef90_UPI0008717716	phage head-tail connector protein	NA
UHGV-0018027_29	eggNOG-mapper	33035.JPJF01000039_gene274	NA	NA
UHGV-0018027_29	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0018027_30	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0018027_30	UniRef90	UniRef90_UPI00189BA764	phage head closure protein	NA
UHGV-0018027_30	eggNOG-mapper	1123314.AUIO01000016_gene843	head-tail adaptor	NA
UHGV-0018027_30	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0018027_30	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0018027_30	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0018027_31	eggNOG-mapper	1203606.HMPREF1526_00975	NA	NA
UHGV-0018027_31	Structural annotation	PF05657	NA	NA
UHGV-0018027_32	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0018027_32	UniRef90	UniRef90_R5IIS5	HK97 gp10 family phage protein	NA
UHGV-0018027_32	eggNOG-mapper	1203606.HMPREF1526_00974	NA	NA
UHGV-0018027_32	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0018027_32	Structural annotation	TIGR01725	NA	NA
UHGV-0018027_33	PHROG	phrog_88	major tail protein	tail
UHGV-0018027_33	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0018027_33	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0018027_34	Structural annotation	PF11836, TIGR01674	NA	NA
UHGV-0018027_35	PHROG	phrog_23464	NA	unknown function
UHGV-0018027_35	eggNOG-mapper	33035.JPJF01000023_gene3232	phage tail tape measure protein	NA
UHGV-0018027_35	COG	COG5412	Phage-related protein	NA
UHGV-0018027_35	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-0018027_36	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0018027_37	PHROG	phrog_6616	tail protein	tail
UHGV-0018027_37	UniRef90	UniRef90_A0A2Z4QA17	KID repeat-containing protein	NA
UHGV-0018027_37	eggNOG-mapper	1235797.C816_04180	NA	NA
UHGV-0018027_37	Structural annotation	PF21683, TIGR02126, COG4379	NA	NA
UHGV-0018027_38	eggNOG-mapper	1235797.C816_04179	Chaperone of endosialidase	NA
UHGV-0018027_38	Structural annotation	PF14594	NA	NA
UHGV-0018027_39	Pfam	PF09479	Listeria-Bacteroides repeat domain (List_Bact_rpt)	Flg_new
UHGV-0018027_39	COG	COG4886	Leucine-rich repeat (LRR) protein	NA
UHGV-0018027_39	Structural annotation	PF21605, NF041825, COG3198	NA	NA
UHGV-0018027_41	PHROG	phrog_3299	NA	unknown function
UHGV-0018027_41	eggNOG-mapper	1235797.C816_04177	alginic acid biosynthetic process	NA
UHGV-0018027_41	COG	COG1511	NA	NA
UHGV-0018027_42	eggNOG-mapper	1384065.JAGS01000001_gene2507	domain, Protein	NA
UHGV-0018027_42	NCBIFam	TIGR02167.1	bacterial surface protein 26-residue repeat	NA
UHGV-0018027_42	COG	COG1876	LD-carboxypeptidase LdcB, LAS superfamily	NA