UHGV-0018357

Genome information

vOTU vOTU-020239

Genome length 46,883 bps

CDS count 73

Completeness 77.11% (medium-quality)

geNomad score 0.9738

Prediction confidence Confident

Genome information
Genome ID	UHGV-0018357
vOTU ID	vOTU-020239
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_D_16_2189__NODE_1267_length_46883_cov_6.287036
BioSample	SAMEA4766187
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	77.11% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	23
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9738
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	61.01
Jumbo phage	No

Genome content
Genome length	46,883 bps
GC content	64.07%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	73
CDS density	94.23%
Average CDS length	610.48 bps
tRNA count	8
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0018357_1	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0018357_1	PHROG	phrog_14048	endolysin	lysis
UHGV-0018357_1	UniRef90	UniRef90_UPI00093172DC	S-layer homology domain-containing protein	NA
UHGV-0018357_1	eggNOG-mapper	742742.HMPREF9452_01282	domain, Protein	NA
UHGV-0018357_1	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0018357_1	Pfam	PF00395	S-layer homology domain	SLH
UHGV-0018357_1	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0018357_2	PHROG	phrog_10091	holin	lysis
UHGV-0018357_2	UniRef90	UniRef90_UPI000930D7BB	phage holin	NA
UHGV-0018357_2	eggNOG-mapper	428127.EUBDOL_01206	COG5546 Small integral membrane protein	NA
UHGV-0018357_2	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0018357_2	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0018357_2	COG	COG5546	NA	NA
UHGV-0018357_2	Structural annotation	COG5546	NA	NA
UHGV-0018357_4	eggNOG-mapper	1231336.L248_1708	NA	NA
UHGV-0018357_5	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0018357_5	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0018357_5	UniRef90	UniRef90_UPI00092FDF8A	RNA-directed DNA polymerase	NA
UHGV-0018357_5	eggNOG-mapper	398767.Glov_2073	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0018357_5	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0018357_5	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0018357_5	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0018357_6	UniRef90	UniRef90_UPI001D061C73	NA	NA
UHGV-0018357_6	Pfam	PF19789	NA	DUF6273
UHGV-0018357_8	PHROG	phrog_10993	Hoc-like head decoration	head and packaging
UHGV-0018357_8	UniRef90	UniRef90_UPI000930ECAB	NA	NA
UHGV-0018357_8	eggNOG-mapper	1121866.AUGK01000004_gene188	serine threonine protein kinase	NA
UHGV-0018357_8	Pfam	PF19789	NA	DUF6273
UHGV-0018357_8	COG	COG3827	Cell pole-organizing protein PopZ	NA
UHGV-0018357_9	Pfam	PF09458	H-type lectin domain	H_lectin
UHGV-0018357_10	PHROG	phrog_38190	NA	unknown function
UHGV-0018357_10	eggNOG-mapper	665956.HMPREF1032_02936	NA	NA
UHGV-0018357_11	PHROG	phrog_3639	minor tail protein	tail
UHGV-0018357_11	UniRef90	UniRef90_UPI00092FE352	BppU family phage baseplate upper protein	NA
UHGV-0018357_11	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0018357_13	PHROG	phrog_12312	virion structural protein	head and packaging
UHGV-0018357_13	UniRef90	UniRef90_UPI0009305F17	phage tail protein	NA
UHGV-0018357_13	eggNOG-mapper	649639.Bcell_2114	Phage minor structural protein	NA
UHGV-0018357_13	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0018357_13	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0018357_13	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0018357_14	PHROG	phrog_202	distal tail protein Dit	tail
UHGV-0018357_14	UniRef90	UniRef90_UPI0009FACBC4	phage tail family protein	NA
UHGV-0018357_14	eggNOG-mapper	1089553.Tph_c23050	TIGRFAM phage tail component	NA
UHGV-0018357_14	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0018357_14	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0018357_14	COG	COG4722	Phage-related protein YomH	NA
UHGV-0018357_14	Structural annotation	PF05709, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0018357_15	PHROG	phrog_1686	tail length tape measure protein	tail
UHGV-0018357_15	UniRef90	UniRef90_UPI000930964E	tape measure protein	NA
UHGV-0018357_15	eggNOG-mapper	1437608.BBIA_2143	phage tail tape measure protein	NA
UHGV-0018357_15	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0018357_15	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0018357_15	COG	COG5412	Phage-related protein	NA
UHGV-0018357_16	PHROG	phrog_7423	NA	unknown function
UHGV-0018357_16	eggNOG-mapper	1232430.CAVG010000113_gene1013	NA	NA
UHGV-0018357_17	PHROG	phrog_2115	tail protein	tail
UHGV-0018357_17	eggNOG-mapper	1235792.C808_05346	NA	NA
UHGV-0018357_17	Structural annotation	PF11836	NA	NA
UHGV-0018357_18	PHROG	phrog_1407	major tail protein	tail
UHGV-0018357_18	UniRef90	UniRef90_UPI000931AEB7	phage major tail protein, TP901-1 family	NA
UHGV-0018357_18	eggNOG-mapper	742722.HMPREF9463_00251	Phage tail tube protein	NA
UHGV-0018357_18	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0018357_18	NCBIFam	TIGR02126.1	phage major tail protein, TP901-1 family	NA
UHGV-0018357_18	COG	COG5437	Phage tail protein, TP901-1 family	NA
UHGV-0018357_18	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0018357_19	UniRef90	UniRef90_UPI000930EE69	NA	NA
UHGV-0018357_19	eggNOG-mapper	1235792.C808_05344	NA	NA
UHGV-0018357_19	Pfam	PF16807	NA	DUF5072
UHGV-0018357_19	Structural annotation	PF16807, COG5003	NA	NA
UHGV-0018357_20	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0018357_20	UniRef90	UniRef90_UPI0019673462	HK97 gp10 family phage protein	NA
UHGV-0018357_20	eggNOG-mapper	1125712.HMPREF1316_1514	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0018357_20	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0018357_21	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0018357_22	UniRef90	UniRef90_X8HX34	Phage gp6-like head-tail connector protein	NA
UHGV-0018357_22	eggNOG-mapper	742722.HMPREF9463_00247	NA	NA
UHGV-0018357_22	Structural annotation	PF05135	NA	NA
UHGV-0018357_23	PHROG	phrog_29	major head protein	head and packaging
UHGV-0018357_23	UniRef90	UniRef90_UPI000931CAC7	major capsid protein	NA
UHGV-0018357_23	eggNOG-mapper	742722.HMPREF9463_00246	Phage major capsid protein E	NA
UHGV-0018357_23	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0018357_23	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0018357_24	PHROG	phrog_909	major head protein	head and packaging
UHGV-0018357_25	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0018357_25	UniRef90	UniRef90_UPI000930CB63	NA	NA
UHGV-0018357_25	eggNOG-mapper	742722.HMPREF9463_00244	NA	NA
UHGV-0018357_25	Pfam	PF14265	NA	DUF4355
UHGV-0018357_25	Structural annotation	PF14265	NA	NA
UHGV-0018357_27	UniRef90	UniRef90_UPI0009316548	thioredoxin family protein	NA
UHGV-0018357_27	COG	COG0526	Thiol-disulfide isomerase or thioredoxin	NA
UHGV-0018357_29	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0018357_29	UniRef90	UniRef90_UPI0009F96B95	minor capsid protein	NA
UHGV-0018357_29	eggNOG-mapper	742722.HMPREF9463_00241	domain, Protein	NA
UHGV-0018357_29	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0018357_29	Pfam	PF15644	Papain fold toxin 1, glutamine deamidase	Gln_amidase
UHGV-0018357_29	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0018357_29	COG	COG2369	NA	NA
UHGV-0018357_30	UniRef90	UniRef90_UPI000931FACD	Rho termination factor N-terminal domain-containing protein	NA
UHGV-0018357_30	Pfam	PF07498	Rho termination factor, N-terminal domain	Rho_N
UHGV-0018357_31	PHROG	phrog_64	portal protein	head and packaging
UHGV-0018357_31	UniRef90	UniRef90_UPI0009FB757D	phage portal protein	NA
UHGV-0018357_31	eggNOG-mapper	742722.HMPREF9463_00239	Phage portal protein, SPP1 family	NA
UHGV-0018357_31	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0018357_31	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0018357_31	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0018357_32	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0018357_32	UniRef90	UniRef90_UPI00166CA12B	terminase family protein	NA
UHGV-0018357_32	eggNOG-mapper	742722.HMPREF9463_00238	NA	NA
UHGV-0018357_32	Structural annotation	PF17289, PF05876, MF_04147, NF033889, COG5323	NA	NA
UHGV-0018357_33	PHROG	phrog_2412	NA	unknown function
UHGV-0018357_33	eggNOG-mapper	1125712.HMPREF1316_1524	NA	NA
UHGV-0018357_35	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0018357_38	UniRef90	UniRef90_A0A437UTS5	NA	NA
UHGV-0018357_39	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0018357_39	UniRef90	UniRef90_A0A3N0AG95	Holliday junction resolvase RecU	NA
UHGV-0018357_40	UniRef90	UniRef90_UPI000930C7D4	NA	NA
UHGV-0018357_40	Pfam	PF11753	NA	DUF3310
UHGV-0018357_42	UniRef90	UniRef90_UPI000931B6AA	NA	NA
UHGV-0018357_42	Pfam	PF20037	NA	DUF6440
UHGV-0018357_43	PHROG	phrog_7839	NA	unknown function
UHGV-0018357_43	eggNOG-mapper	1437608.BBIA_1864	NA	NA
UHGV-0018357_44	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0018357_44	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0018357_44	UniRef90	UniRef90_UPI0009316224	dUTP diphosphatase	NA
UHGV-0018357_44	eggNOG-mapper	445975.COLSTE_02170	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-0018357_44	Pfam	PF00692	dUTPase	dUTPase
UHGV-0018357_44	NCBIFam	NF001862.0	dUTP diphosphatase	NA
UHGV-0018357_44	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0018357_44	Structural annotation	PF00692, MF_00116, TIGR00576, COG0756	NA	NA
UHGV-0018357_45	PHROG	phrog_5781	NA	unknown function
UHGV-0018357_45	UniRef90	UniRef90_UPI0009300156	NA	NA
UHGV-0018357_45	eggNOG-mapper	1235794.C811_01363	NA	NA
UHGV-0018357_45	Pfam	PF14359	NA	DUF4406
UHGV-0018357_47	UniRef90	UniRef90_UPI0009310119	Rho termination factor N-terminal domain-containing protein	NA
UHGV-0018357_48	PHROG	phrog_1891	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0018357_48	UniRef90	UniRef90_UPI00093098FC	HNH endonuclease	NA
UHGV-0018357_48	eggNOG-mapper	742742.HMPREF9452_00411	HNH endonuclease	NA
UHGV-0018357_48	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0018357_48	Structural annotation	PF13392	NA	NA
UHGV-0018357_49	PHROG	phrog_2044	RNA polymerase beta subunit	DNA, RNA and nucleotide metabolism
UHGV-0018357_49	UniRef90	UniRef90_A6TRD4	NA	NA
UHGV-0018357_49	eggNOG-mapper	1536775.H70737_16315	NA	NA
UHGV-0018357_49	Structural annotation	MF_00337, NF010671, COG1722	NA	NA
UHGV-0018357_54	PHROG	phrog_2164	NA	unknown function
UHGV-0018357_55	UniRef90	UniRef90_UPI000931C6E6	Lar family restriction alleviation protein	NA
UHGV-0018357_55	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0018357_58	eggNOG-mapper	469378.Ccur_02900	NA	NA
UHGV-0018357_59	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0018357_59	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0018357_59	UniRef90	UniRef90_UPI0009315887	ATP-binding protein	NA
UHGV-0018357_59	eggNOG-mapper	742722.HMPREF9463_00206	IstB-like ATP binding protein	NA
UHGV-0018357_59	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0018357_59	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0018357_59	Structural annotation	PF01695, MF_01919, NF005992, COG1484	NA	NA
UHGV-0018357_60	PHROG	phrog_15768	NA	unknown function
UHGV-0018357_60	eggNOG-mapper	1125712.HMPREF1316_1538	NA	NA
UHGV-0018357_60	Structural annotation	PF19808	NA	NA
UHGV-0018357_61	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0018357_61	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0018357_61	UniRef90	UniRef90_UPI000931232E	single-stranded DNA-binding protein	NA
UHGV-0018357_61	eggNOG-mapper	1504822.CCNO01000008_gene2043	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0018357_61	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0018357_61	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0018357_61	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0018357_61	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0018357_61	Structural annotation	PF00436, MF_00984, NF006445, COG0629	NA	NA
UHGV-0018357_62	PHROG	phrog_1389	NA	unknown function
UHGV-0018357_62	eggNOG-mapper	1347392.CCEZ01000060_gene3269	NA	NA
UHGV-0018357_62	Structural annotation	PF11056, TIGR04376, COG1842	NA	NA
UHGV-0018357_63	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0018357_63	UniRef90	UniRef90_UPI00093167A9	ERF family protein	NA
UHGV-0018357_63	eggNOG-mapper	1111121.HMPREF1247_0047	Erf family	NA
UHGV-0018357_63	Pfam	PF04404	ERF superfamily	ERF
UHGV-0018357_63	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0018357_64	PHROG	phrog_674	NA	unknown function
UHGV-0018357_64	UniRef90	UniRef90_UPI0009306B6F	NA	NA
UHGV-0018357_64	eggNOG-mapper	479437.Elen_2601	NA	NA
UHGV-0018357_64	Pfam	PF07498	Rho termination factor, N-terminal domain	Rho_N
UHGV-0018357_64	Pfam	PF07083	NA	DUF1351
UHGV-0018357_67	UniRef90	UniRef90_UPI00119F55F8	XRE family transcriptional regulator	NA
UHGV-0018357_67	eggNOG-mapper	1430331.EP10_02425	NA	NA
UHGV-0018357_67	Structural annotation	PF05339, NF041951, COG1476	NA	NA
UHGV-0018357_68	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0018357_68	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0018357_68	UniRef90	UniRef90_A0A1Y3UJN5	Peptidase_S24 domain-containing protein	NA
UHGV-0018357_68	eggNOG-mapper	553184.ATORI0001_1026	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0018357_68	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0018357_68	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0018357_68	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0018357_69	eggNOG-mapper	742722.HMPREF9463_00385	NA	NA
UHGV-0018357_70	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0018357_70	PHROG	phrog_95	integrase	integration and excision
UHGV-0018357_70	UniRef90	UniRef90_UPI000B1DE676	recombinase family protein	NA
UHGV-0018357_70	eggNOG-mapper	999413.HMPREF1094_00247	Recombinase	NA
UHGV-0018357_70	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0018357_70	Pfam	PF07508	Recombinase	Recombinase
UHGV-0018357_70	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0018357_70	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0018357_70	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0018357_72	UniRef90	UniRef90_A0A6N6NNP7	Class III signal peptide-containing protein	NA
UHGV-0018357_72	eggNOG-mapper	1235794.C811_01333	Flp Fap pilin component	NA
UHGV-0018357_72	COG	COG3847	Flp pilus assembly protein, pilin Flp	NA
UHGV-0018357_73	KOfam	K12511	tadC; tight adherence protein C	NA
UHGV-0018357_73	UniRef90	UniRef90_A0A6N6NNA3	Type II secretion system protein	NA
UHGV-0018357_73	eggNOG-mapper	1235794.C811_01334	Type II secretion system	NA
UHGV-0018357_73	Pfam	PF00482	Type II secretion system (T2SS), protein F	T2SSF
UHGV-0018357_73	COG	COG2064	Flp pilus assembly protein TadC	NA