UHGV-0018563

Genome information

vOTU vOTU-020270

Genome length 35,964 bps

CDS count 42

Completeness 66.98% (medium-quality)

geNomad score 0.9727

Prediction confidence Confident

Genome information
Genome ID	UHGV-0018563
vOTU ID	vOTU-020270
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-A-D_L_21_1526__NODE_1015_length_35964_cov_6.936913
BioSample	NA
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	66.98% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9727
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.27
Jumbo phage	No

Genome content
Genome length	35,964 bps
GC content	56.25%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	42
CDS density	91.99%
Average CDS length	791.29 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0018563_1	PHROG	phrog_10385	NA	unknown function
UHGV-0018563_1	UniRef90	UniRef90_A0A7X7CJD0	RHS repeat-associated core domain-containing protein	NA
UHGV-0018563_1	eggNOG-mapper	994573.T472_0205070	TIGRFAM RHS repeat-associated core	NA
UHGV-0018563_1	NCBIFam	TIGR03696.1	RHS repeat-associated core domain-containing protein	NA
UHGV-0018563_1	COG	COG3209	NA	NA
UHGV-0018563_4	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0018563_4	PHROG	phrog_95	integrase	integration and excision
UHGV-0018563_4	UniRef90	UniRef90_R7EVJ7	Resolvase domain	NA
UHGV-0018563_4	eggNOG-mapper	1378168.N510_01584	resolvase	NA
UHGV-0018563_4	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0018563_4	Pfam	PF07508	Recombinase	Recombinase
UHGV-0018563_4	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0018563_4	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0018563_4	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-0018563_5	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0018563_5	PHROG	phrog_95	integrase	integration and excision
UHGV-0018563_5	UniRef90	UniRef90_A0A7C6UCY1	Recombinase family protein	NA
UHGV-0018563_5	eggNOG-mapper	1378168.N510_01583	resolvase	NA
UHGV-0018563_5	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0018563_5	Pfam	PF07508	Recombinase	Recombinase
UHGV-0018563_5	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0018563_5	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0018563_5	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0018563_6	PHROG	phrog_2308	NA	unknown function
UHGV-0018563_6	UniRef90	UniRef90_A0A7X6UQX6	RNA polymerase subunit sigma-70	NA
UHGV-0018563_6	eggNOG-mapper	573061.Clocel_3959	COG1961 Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-0018563_6	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0018563_6	Structural annotation	PF06056, COG2771	NA	NA
UHGV-0018563_7	KOfam	K07273	acm; lysozyme	NA
UHGV-0018563_7	PHROG	phrog_291	endolysin	lysis
UHGV-0018563_7	UniRef90	UniRef90_A0A1V5XBK5	Lysozyme M1	NA
UHGV-0018563_7	eggNOG-mapper	742740.HMPREF9474_01683	Glycosyl hydrolases family 25	NA
UHGV-0018563_7	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0018563_7	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0018563_7	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0018563_7	Structural annotation	PF01183, PF08230, COG3757	NA	NA
UHGV-0018563_8	UniRef90	UniRef90_UPI001C3EF7F0	S-layer homology domain-containing protein	NA
UHGV-0018563_8	eggNOG-mapper	877411.JMMA01000002_gene888	NA	NA
UHGV-0018563_8	Structural annotation	PF00877, NF033743, COG0791	NA	NA
UHGV-0018563_9	PHROG	phrog_21233	NA	unknown function
UHGV-0018563_9	UniRef90	UniRef90_UPI001F331774	phage holin family protein	NA
UHGV-0018563_9	eggNOG-mapper	397288.C806_01525	Bacteriophage holin family	NA
UHGV-0018563_9	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0018563_9	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0018563_9	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0018563_9	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0018563_10	UniRef90	UniRef90_A0A3E2B3T2	NA	NA
UHGV-0018563_11	PHROG	phrog_372	tail protein	tail
UHGV-0018563_11	UniRef90	UniRef90_UPI001F3D1CB8	NA	NA
UHGV-0018563_11	eggNOG-mapper	1406785.U5PU90_9CAUD	N-acetylmuramoyl-L-alanine amidase activity	NA
UHGV-0018563_11	Pfam	PF05895	NA	DUF859
UHGV-0018563_11	Structural annotation	PF05895, MF_04116, NF010681, COG3401	NA	NA
UHGV-0018563_12	PHROG	phrog_2929	tail fiber protein	tail
UHGV-0018563_12	UniRef90	UniRef90_R6C4A8	Structural component of the tail fiber	NA
UHGV-0018563_12	eggNOG-mapper	1415775.U729_3142	NA	NA
UHGV-0018563_12	COG	COG4926	Phage-related protein	NA
UHGV-0018563_12	Structural annotation	PF04862, NF033675, COG4935	NA	NA
UHGV-0018563_13	PHROG	phrog_3267	tail protein	tail
UHGV-0018563_13	UniRef90	UniRef90_R9C033	YkqB	NA
UHGV-0018563_13	eggNOG-mapper	207656.S6BUV4_9CAUD	NA	NA
UHGV-0018563_13	Structural annotation	PF02010, MF_04116, NF010681, COG1361	NA	NA
UHGV-0018563_14	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0018563_14	UniRef90	UniRef90_UPI001F477F79	phage tail protein	NA
UHGV-0018563_14	eggNOG-mapper	1160721.RBI_I01574	Prophage endopeptidase tail	NA
UHGV-0018563_14	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0018563_14	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0018563_14	COG	COG4926	Phage-related protein	NA
UHGV-0018563_14	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0018563_15	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0018563_15	UniRef90	UniRef90_A0A224AT67	Phage tail component	NA
UHGV-0018563_15	eggNOG-mapper	764299.STRIC_0112	phage tail	NA
UHGV-0018563_15	COG	COG4722	Phage-related protein YomH	NA
UHGV-0018563_15	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0018563_16	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0018563_16	UniRef90	UniRef90_A0A0U5PM31	Chromosome partition protein Smc	NA
UHGV-0018563_16	eggNOG-mapper	293826.Amet_4019	tape measure	NA
UHGV-0018563_16	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0018563_17	PHROG	phrog_10613	tail length tape measure protein	tail
UHGV-0018563_17	UniRef90	UniRef90_A0A847CC82	Phage tail protein (Fragment)	NA
UHGV-0018563_17	eggNOG-mapper	1121334.KB911068_gene2299	Phage tail tape measure protein, TP901 family	NA
UHGV-0018563_17	COG	COG5283	Phage-related tail protein	NA
UHGV-0018563_18	PHROG	phrog_2115	tail protein	tail
UHGV-0018563_18	eggNOG-mapper	1216932.CM240_0682	NA	NA
UHGV-0018563_19	PHROG	phrog_88	major tail protein	tail
UHGV-0018563_19	UniRef90	UniRef90_UPI001F25B395	phage tail protein	NA
UHGV-0018563_19	eggNOG-mapper	1216932.CM240_0623	phage major tail protein, phi13 family	NA
UHGV-0018563_19	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0018563_19	COG	COG5492	NA	NA
UHGV-0018563_19	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0018563_20	PHROG	phrog_78	tail terminator	connector
UHGV-0018563_20	eggNOG-mapper	1216932.CM240_0622	High confidence in function and specificity	NA
UHGV-0018563_20	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-0018563_21	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0018563_21	UniRef90	UniRef90_UPI001F1863AC	HK97 gp10 family phage protein	NA
UHGV-0018563_21	eggNOG-mapper	1120978.KB894083_gene902	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0018563_21	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0018563_21	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0018563_21	Structural annotation	TIGR01725	NA	NA
UHGV-0018563_22	UniRef90	UniRef90_A0A0X8H075	Phage head-tail adapter protein	NA
UHGV-0018563_22	eggNOG-mapper	1120978.KB894083_gene903	Phage head-tail joining protein	NA
UHGV-0018563_22	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0018563_22	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0018563_22	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0018563_23	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0018563_23	UniRef90	UniRef90_A0A3D2CK45	Phage gp6-like head-tail connector protein	NA
UHGV-0018563_23	eggNOG-mapper	665950.HMPREF1025_02654	NA	NA
UHGV-0018563_23	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0018563_23	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0018563_23	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0018563_24	eggNOG-mapper	1120978.KB894083_gene905	Head fiber protein	NA
UHGV-0018563_25	PHROG	phrog_10	major head protein	head and packaging
UHGV-0018563_25	UniRef90	UniRef90_A0A0U5K5I8	Phage capsid family protein	NA
UHGV-0018563_25	eggNOG-mapper	665956.HMPREF1032_02265	Phage major capsid protein, HK97 family	NA
UHGV-0018563_25	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0018563_25	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0018563_25	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0018563_25	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0018563_26	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0018563_26	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0018563_26	UniRef90	UniRef90_A0A1Y4MZX0	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0018563_26	eggNOG-mapper	665956.HMPREF1032_02266	Belongs to the peptidase S14 family	NA
UHGV-0018563_26	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0018563_26	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0018563_27	PHROG	phrog_12	portal protein	head and packaging
UHGV-0018563_27	UniRef90	UniRef90_G9RPU8	HK97 family phage portal protein	NA
UHGV-0018563_27	eggNOG-mapper	665956.HMPREF1032_02267	Phage portal protein, HK97 family	NA
UHGV-0018563_27	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0018563_27	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0018563_27	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0018563_27	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0018563_28	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0018563_28	UniRef90	UniRef90_E6U9Z8	Terminase	NA
UHGV-0018563_28	eggNOG-mapper	665950.HMPREF1025_02650	Phage Terminase	NA
UHGV-0018563_28	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0018563_28	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0018563_28	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0018563_28	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0018563_29	PHROG	phrog_6231	NA	unknown function
UHGV-0018563_29	UniRef90	UniRef90_A0A3A9J342	Nmad4 domain-containing protein	NA
UHGV-0018563_29	eggNOG-mapper	1121334.KB911068_gene2287	NA	NA
UHGV-0018563_29	Pfam	PF18756	Nucleotide modification associated domain 4	Nmad4
UHGV-0018563_29	Structural annotation	PF18756	NA	NA
UHGV-0018563_31	PHROG	phrog_2945	NA	unknown function
UHGV-0018563_31	eggNOG-mapper	665956.HMPREF1032_02271	NA	NA
UHGV-0018563_32	UniRef90	UniRef90_A0A3D2HPH1	Gamma-glutamylcyclotransferase (Fragment)	NA
UHGV-0018563_32	eggNOG-mapper	665956.HMPREF1032_02272	Gamma-glutamyl cyclotransferase, AIG2-like	NA
UHGV-0018563_32	COG	COG2105	Predicted gamma-glutamylamine cyclotransferase YtfP, GGCT/AIG2-like family	NA
UHGV-0018563_33	KOfam	K00682	GGCT; gamma-glutamylcyclotransferase [EC:4.3.2.9]	NA
UHGV-0018563_33	PHROG	phrog_2520	gamma-glutamyl cyclotransferase	moron, auxiliary metabolic gene and host takeover
UHGV-0018563_33	UniRef90	UniRef90_UPI00195C57CB	gamma-glutamylcyclotransferase	NA
UHGV-0018563_33	eggNOG-mapper	665956.HMPREF1032_02272	Gamma-glutamyl cyclotransferase, AIG2-like	NA
UHGV-0018563_33	Pfam	PF06094	Gamma-glutamyl cyclotransferase, AIG2-like	GGACT
UHGV-0018563_33	COG	COG2105	Predicted gamma-glutamylamine cyclotransferase YtfP, GGCT/AIG2-like family	NA
UHGV-0018563_34	PHROG	phrog_2443	amidoligase enzyme	other
UHGV-0018563_34	UniRef90	UniRef90_D4MIN6	Putative amidoligase enzyme	NA
UHGV-0018563_34	eggNOG-mapper	665956.HMPREF1032_02273	Putative amidoligase enzyme	NA
UHGV-0018563_34	AcrCatalog	cluster_16277	NA	NA
UHGV-0018563_34	Pfam	PF12224	Putative amidoligase enzyme	Amidoligase_2
UHGV-0018563_34	Structural annotation	PF12224	NA	NA
UHGV-0018563_35	PHROG	phrog_3782	NA	unknown function
UHGV-0018563_35	UniRef90	UniRef90_G9RPV6	NA	NA
UHGV-0018563_35	eggNOG-mapper	665956.HMPREF1032_02275	NA	NA
UHGV-0018563_35	Pfam	PF14192	NA	DUF4314
UHGV-0018563_35	COG	COG2105	Predicted gamma-glutamylamine cyclotransferase YtfP, GGCT/AIG2-like family	NA
UHGV-0018563_35	Structural annotation	PF14192, MF_00754, NF003018	NA	NA
UHGV-0018563_36	PHROG	phrog_2443	amidoligase enzyme	other
UHGV-0018563_36	UniRef90	UniRef90_UPI001958E318	virulence protein	NA
UHGV-0018563_36	eggNOG-mapper	665956.HMPREF1032_02276	NA	NA
UHGV-0018563_36	AcrCatalog	cluster_14489	NA	NA
UHGV-0018563_37	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0018563_37	PHROG	phrog_38038	NA	unknown function
UHGV-0018563_37	UniRef90	UniRef90_A0A0U5PF82	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0018563_37	eggNOG-mapper	665956.HMPREF1032_02277	C-5 cytosine-specific DNA methylase	NA
UHGV-0018563_37	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-0018563_37	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0018563_37	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0018563_37	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0018563_37	Structural annotation	PF00145, MF_00786, TIGR00675, COG0270	NA	NA
UHGV-0018563_38	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0018563_38	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0018563_38	UniRef90	UniRef90_G9RPV9	Methyltransferase	NA
UHGV-0018563_38	eggNOG-mapper	665956.HMPREF1032_02278	NA	NA
UHGV-0018563_38	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0018563_38	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0018563_38	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0018563_38	COG	COG0863	DNA modification methylase	NA
UHGV-0018563_38	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-0018563_39	PHROG	phrog_1569	NA	unknown function
UHGV-0018563_39	UniRef90	UniRef90_F3AY37	S-AdoMet_synt_N domain-containing protein	NA
UHGV-0018563_39	eggNOG-mapper	665950.HMPREF1025_02641	S-adenosylmethionine synthetase, N-terminal domain	NA
UHGV-0018563_39	Pfam	PF00438	S-adenosylmethionine synthetase, N-terminal domain	S-AdoMet_synt_N
UHGV-0018563_39	COG	COG0192	S-adenosylmethionine synthetase	NA
UHGV-0018563_39	Structural annotation	PF01941, MF_00086, TIGR01034, COG0192	NA	NA
UHGV-0018563_40	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0018563_40	UniRef90	UniRef90_A0A7X5J169	Terminase	NA
UHGV-0018563_40	eggNOG-mapper	665950.HMPREF1025_02640	NA	NA
UHGV-0018563_40	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0018563_40	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0018563_41	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0018563_41	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0018563_41	UniRef90	UniRef90_A0A3A9J381	HNH endonuclease	NA
UHGV-0018563_41	eggNOG-mapper	1121334.KB911068_gene2277	HNH endonuclease	NA
UHGV-0018563_41	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0018563_41	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0018563_41	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0018563_42	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0018563_42	UniRef90	UniRef90_N2A082	Sigma70_r4 domain-containing protein	NA
UHGV-0018563_42	eggNOG-mapper	1235802.C823_05292	NA	NA
UHGV-0018563_42	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0018563_42	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0018563_42	Structural annotation	PF04545, MF_00674, NF008889, COG1191	NA	NA