UHGV-0018565

Genome information

Genome length 39,325 bps

CDS count 64

Completeness 62.73% (medium-quality)

geNomad score 0.9244

Prediction confidence Confident

Genome information
Genome ID	UHGV-0018565
vOTU ID	vOTU-023459
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-A-D_L_21_1526__NODE_881_length_39402_cov_9.583242
BioSample	NA
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	62.73% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9244
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	47.64
Jumbo phage	No

Genome content
Genome length	39,325 bps
GC content	54.04%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	64
CDS density	92.26%
Average CDS length	570.09 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0018565_1	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0018565_1	UniRef90	UniRef90_UPI0009BB5737	site-specific DNA-methyltransferase	NA
UHGV-0018565_1	eggNOG-mapper	1121342.AUCO01000004_gene630	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0018565_1	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0018565_1	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0018565_1	COG	COG0863	DNA modification methylase	NA
UHGV-0018565_1	Structural annotation	PF02195, MF_02015, TIGR04285, COG5119	NA	NA
UHGV-0018565_4	KOfam	K14059	int; integrase	NA
UHGV-0018565_4	PHROG	phrog_1	integrase	integration and excision
UHGV-0018565_4	UniRef90	UniRef90_A0A2N1RIZ7	Tyr recombinase domain-containing protein	NA
UHGV-0018565_4	eggNOG-mapper	158189.SpiBuddy_1822	DNA integration	NA
UHGV-0018565_4	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0018565_4	Structural annotation	PF00589, PF02899, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0018565_6	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0018565_7	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0018565_10	PHROG	phrog_11717	NA	unknown function
UHGV-0018565_10	eggNOG-mapper	1399942.U3PCT3_9CAUD	NA	NA
UHGV-0018565_11	PHROG	phrog_6244	NA	unknown function
UHGV-0018565_11	UniRef90	UniRef90_A0A0S3KFR4	Endonuclease	NA
UHGV-0018565_11	eggNOG-mapper	585502.HMPREF0645_2602	NA	NA
UHGV-0018565_11	Structural annotation	PF12705, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0018565_12	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0018565_12	UniRef90	UniRef90_A0A5C4TGH4	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0018565_12	eggNOG-mapper	743719.PaelaDRAFT_5642	Endodeoxyribonuclease RusA	NA
UHGV-0018565_12	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0018565_12	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0018565_12	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0018565_13	PHROG	phrog_19658	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0018565_13	UniRef90	UniRef90_A0A412VJE1	NA	NA
UHGV-0018565_13	eggNOG-mapper	1294142.CINTURNW_1664	DnaD domain protein	NA
UHGV-0018565_13	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0018565_13	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0018565_14	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0018565_14	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0018565_14	UniRef90	UniRef90_A0A2N1RAG3	IstB_IS21 domain-containing protein	NA
UHGV-0018565_14	eggNOG-mapper	471881.PROPEN_02009	DNA replication protein	NA
UHGV-0018565_14	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0018565_14	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0018565_14	Structural annotation	PF01695, MF_01158, NF005992, COG1484	NA	NA
UHGV-0018565_16	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0018565_16	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0018565_16	UniRef90	UniRef90_A0A652ZYM5	Single-stranded DNA-binding protein	NA
UHGV-0018565_16	eggNOG-mapper	869209.Tresu_1236	Single-stranded DNA-binding protein	NA
UHGV-0018565_16	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0018565_16	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0018565_16	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0018565_16	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0018565_16	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0018565_26	UniRef90	UniRef90_A0A1V8ZDR6	Plasmid maintenance system killer protein	NA
UHGV-0018565_26	eggNOG-mapper	387344.LVIS_A05	Plasmid maintenance system killer	NA
UHGV-0018565_26	COG	COG3549	Plasmid maintenance system killer protein	NA
UHGV-0018565_27	KOfam	K21498	higA-1; antitoxin HigA-1	NA
UHGV-0018565_27	eggNOG-mapper	1539298.JO41_06165	BrnA antitoxin of type II toxin-antitoxin system	NA
UHGV-0018565_27	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0018565_27	Pfam	PF14384	BrnA antitoxin of type II toxin-antitoxin system	BrnA_antitoxin
UHGV-0018565_27	COG	COG3514	NA	NA
UHGV-0018565_30	KOfam	K24213	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	NA
UHGV-0018565_30	PHROG	phrog_5073	tail fiber protein	tail
UHGV-0018565_30	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0018565_31	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0018565_31	eggNOG-mapper	552396.HMPREF0863_00269	Phage tail tape measure protein, TP901 family	NA
UHGV-0018565_31	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0018565_31	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0018565_31	COG	COG5283	Phage-related tail protein	NA
UHGV-0018565_31	Structural annotation	PF05537, TIGR01760, COG3941	NA	NA
UHGV-0018565_32	PHROG	phrog_706	NA	unknown function
UHGV-0018565_32	UniRef90	UniRef90_U2UP44	Bacteriophage Gp15 protein	NA
UHGV-0018565_32	eggNOG-mapper	1321782.HMPREF1986_02275	Bacteriophage Gp15 protein	NA
UHGV-0018565_32	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0018565_32	Structural annotation	PF06854	NA	NA
UHGV-0018565_34	PHROG	phrog_3099	NA	unknown function
UHGV-0018565_34	COG	COG5297	Cellulase/cellobiase CelA1	NA
UHGV-0018565_34	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0018565_36	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0018565_36	UniRef90	UniRef90_UPI0008F9755C	minor capsid protein	NA
UHGV-0018565_36	eggNOG-mapper	665959.HMPREF1013_00196	Minor capsid protein	NA
UHGV-0018565_36	Structural annotation	PF11114	NA	NA
UHGV-0018565_39	PHROG	phrog_422	major head protein	head and packaging
UHGV-0018565_39	eggNOG-mapper	658655.HMPREF0988_02560	NA	NA
UHGV-0018565_39	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0018565_40	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0018565_40	UniRef90	UniRef90_A0A173SF83	Phage minor structural protein GP20	NA
UHGV-0018565_40	eggNOG-mapper	1334046.AYTB01000008_gene2312	Phage minor structural protein GP20	NA
UHGV-0018565_40	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0018565_40	Structural annotation	PF06810	NA	NA
UHGV-0018565_43	PHROG	phrog_7445	NA	unknown function
UHGV-0018565_43	UniRef90	UniRef90_A0A318KCJ7	PcfK-like protein	NA
UHGV-0018565_43	eggNOG-mapper	742766.HMPREF9455_01852	PcfK-like protein	NA
UHGV-0018565_43	Pfam	PF14058	PcfK-like protein	PcfK
UHGV-0018565_44	PHROG	phrog_8470	NA	unknown function
UHGV-0018565_44	UniRef90	UniRef90_UPI001C0192C2	PcfJ domain-containing protein	NA
UHGV-0018565_44	eggNOG-mapper	1274374.CBLK010000060_gene542	PcfJ-like protein	NA
UHGV-0018565_44	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0018565_44	Structural annotation	PF14284	NA	NA
UHGV-0018565_54	PHROG	phrog_1934	NA	unknown function
UHGV-0018565_54	UniRef90	UniRef90_UPI001646AC4F	zinc-finger-containing protein	NA
UHGV-0018565_54	eggNOG-mapper	397290.C810_01488	zinc-finger-containing domain	NA
UHGV-0018565_54	Pfam	PF11672	zinc-finger-containing domain	DUF3268
UHGV-0018565_54	Structural annotation	PF11672	NA	NA
UHGV-0018565_56	PHROG	phrog_631	NA	unknown function
UHGV-0018565_57	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0018565_59	KOfam	K11044	spyA; C3 family ADP-ribosyltransferase [EC:2.4.2.-]	NA
UHGV-0018565_59	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0018565_59	UniRef90	UniRef90_UPI0006885B69	phage minor capsid protein	NA
UHGV-0018565_59	eggNOG-mapper	1120998.AUFC01000030_gene2233	NA	NA
UHGV-0018565_59	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0018565_59	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-0018565_59	COG	COG2369	NA	NA
UHGV-0018565_60	PHROG	phrog_533	portal protein	head and packaging
UHGV-0018565_60	UniRef90	UniRef90_A0A7V6NHH5	Phage portal protein	NA
UHGV-0018565_60	eggNOG-mapper	883114.HMPREF9709_01198	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0018565_60	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0018565_61	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0018565_61	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0018565_61	UniRef90	UniRef90_UPI0004AC7321	PBSX family phage terminase large subunit	NA
UHGV-0018565_61	eggNOG-mapper	1329516.JPST01000014_gene657	Phage terminase, large subunit	NA
UHGV-0018565_61	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0018565_61	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0018565_61	COG	COG1783	Phage terminase large subunit	NA
UHGV-0018565_61	Structural annotation	PF04466, PF20441, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0018565_63	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0018565_63	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0018565_63	UniRef90	UniRef90_A0A7C6WAH1	Site-specific DNA-methyltransferase (Fragment)	NA
UHGV-0018565_63	eggNOG-mapper	1027273.GZ77_21170	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0018565_63	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0018565_63	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0018565_63	COG	COG0863	DNA modification methylase	NA
UHGV-0018565_63	Structural annotation	TIGR02469, COG2263	NA	NA
UHGV-0018565_64	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0018565_64	UniRef90	UniRef90_UPI000A77E282	site-specific DNA-methyltransferase	NA
UHGV-0018565_64	eggNOG-mapper	521003.COLINT_02335	DNA methylase	NA
UHGV-0018565_64	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0018565_64	COG	COG0863	DNA modification methylase	NA