UHGV-0018569

Genome information

vOTU vOTU-002078

Genome length 41,539 bps

CDS count 55

Completeness 100.00% (complete)

geNomad score 0.9803

Prediction confidence Confident

Genome information
Genome ID	UHGV-0018569
vOTU ID	vOTU-002078
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-A-D_L_21_1526__NODE_821_length_41616_cov_7.130504
BioSample	NA
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9803
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.31
Jumbo phage	No

Genome content
Genome length	41,539 bps
GC content	56.38%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	91.73%
Average CDS length	695.95 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0018569_1	UniRef90	UniRef90_A0A832P5Z1	NA	NA
UHGV-0018569_1	eggNOG-mapper	1519439.JPJG01000011_gene54	NA	NA
UHGV-0018569_2	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0018569_2	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0018569_2	UniRef90	UniRef90_K1SF61	Terminase-like protein (Fragment)	NA
UHGV-0018569_2	eggNOG-mapper	693746.OBV_01690	phage Terminase large subunit	NA
UHGV-0018569_2	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0018569_2	COG	COG1783	Phage terminase large subunit	NA
UHGV-0018569_4	PHROG	phrog_1863	NA	unknown function
UHGV-0018569_4	eggNOG-mapper	665956.HMPREF1032_03922	NA	NA
UHGV-0018569_7	COG	COG2911	Autotransporter translocation and assembly protein TamB	NA
UHGV-0018569_8	PHROG	phrog_156	portal protein	head and packaging
UHGV-0018569_8	eggNOG-mapper	693746.OBV_01670	NA	NA
UHGV-0018569_8	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0018569_10	PHROG	phrog_422	major head protein	head and packaging
UHGV-0018569_10	UniRef90	UniRef90_A0A6A8VJ17	N4-gp56 family major capsid protein	NA
UHGV-0018569_10	eggNOG-mapper	755731.Clo1100_2434	NA	NA
UHGV-0018569_10	Pfam	PF13290	Chitobiase/beta-hexosaminidase C-terminal domain	CHB_HEX_C_1
UHGV-0018569_10	Structural annotation	PF19821, PF13287, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0018569_12	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0018569_12	PHROG	phrog_1794	amidase	lysis
UHGV-0018569_12	UniRef90	UniRef90_R5AZE6	N-acetylmuramoyl-L-alanine amidase family 2	NA
UHGV-0018569_12	eggNOG-mapper	1235793.C809_04649	Flagellar rod assembly protein muramidase FlgJ	NA
UHGV-0018569_12	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0018569_12	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0018569_12	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0018569_13	PHROG	phrog_881	holin	lysis
UHGV-0018569_13	UniRef90	UniRef90_UPI001D0692FC	phage holin	NA
UHGV-0018569_13	eggNOG-mapper	742740.HMPREF9474_02251	Putative phage holin Dp-1	NA
UHGV-0018569_13	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0018569_13	Structural annotation	PF16938	NA	NA
UHGV-0018569_17	PHROG	phrog_15863	NA	unknown function
UHGV-0018569_17	UniRef90	UniRef90_A0A1Y3R3M0	J domain-containing protein	NA
UHGV-0018569_17	eggNOG-mapper	1121342.AUCO01000030_gene2587	DnaJ molecular chaperone homology domain	NA
UHGV-0018569_17	COG	COG2214	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	NA
UHGV-0018569_19	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0018569_19	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0018569_19	UniRef90	UniRef90_A0A173SKQ6	Holliday junction resolvase	NA
UHGV-0018569_19	eggNOG-mapper	857293.CAAU_0790	Endodeoxyribonuclease RusA	NA
UHGV-0018569_19	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0018569_19	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0018569_19	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0018569_20	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0018569_20	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0018569_20	UniRef90	UniRef90_A0A645DSK7	Single-stranded DNA-binding protein	NA
UHGV-0018569_20	eggNOG-mapper	411467.BACCAP_02389	Single-strand binding protein family	NA
UHGV-0018569_20	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0018569_20	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0018569_20	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0018569_20	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0018569_21	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0018569_23	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0018569_23	UniRef90	UniRef90_A0A415UCX1	NA	NA
UHGV-0018569_23	eggNOG-mapper	1256908.HMPREF0373_00479	NA	NA
UHGV-0018569_23	Pfam	PF14359	NA	DUF4406
UHGV-0018569_23	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-0018569_24	PHROG	phrog_38832	NA	unknown function
UHGV-0018569_24	eggNOG-mapper	665956.HMPREF1032_03087	NA	NA
UHGV-0018569_25	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0018569_25	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0018569_25	UniRef90	UniRef90_B0NAV2	Site-specific DNA-methyltransferase (adenine-specific)	NA
UHGV-0018569_25	eggNOG-mapper	411468.CLOSCI_00571	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0018569_25	PADLOC	MTase_II_00030	Type II methyltransferase	RM
UHGV-0018569_25	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0018569_25	COG	COG0338	DNA-adenine methylase	NA
UHGV-0018569_25	Structural annotation	PF02086, MF_01872, NF008152, COG0338	NA	NA
UHGV-0018569_26	PHROG	phrog_60	NA	unknown function
UHGV-0018569_26	Pfam	PF04448	NA	DUF551
UHGV-0018569_27	PHROG	phrog_111	DNA methyltransferase	other
UHGV-0018569_27	UniRef90	UniRef90_A0A1Y4EVK6	Adenine methyltransferase	NA
UHGV-0018569_27	eggNOG-mapper	760568.Desku_0784	DNA N-6-adenine-methyltransferase	NA
UHGV-0018569_27	PADLOC	oMTase_00015	orphan methyltransferase	RM
UHGV-0018569_27	Pfam	PF05869	DNA N-6-adenine-methyltransferase (Dam)	Dam
UHGV-0018569_27	Structural annotation	PF05869, MF_03187, TIGR01712, COG2263	NA	NA
UHGV-0018569_29	UniRef90	UniRef90_A0A098GES5	Putative phage associated protein	NA
UHGV-0018569_29	Structural annotation	PF01423, MF_00257, NF001963, COG1958	NA	NA
UHGV-0018569_30	PHROG	phrog_2149	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0018569_30	UniRef90	UniRef90_UPI00164BB1D1	transcriptional regulator	NA
UHGV-0018569_30	eggNOG-mapper	203119.Cthe_2466	NA	NA
UHGV-0018569_30	Structural annotation	PF01978, MF_01819, NF041413, COG0735	NA	NA
UHGV-0018569_31	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0018569_31	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0018569_31	UniRef90	UniRef90_A0A810QFR8	Single-stranded DNA-binding protein	NA
UHGV-0018569_31	eggNOG-mapper	1007096.BAGW01000007_gene1922	Single-strand binding protein family	NA
UHGV-0018569_31	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0018569_31	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0018569_31	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0018569_31	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0018569_31	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0018569_32	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0018569_32	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-0018569_32	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-0018569_32	Structural annotation	PF04098, TIGR00607, COG4380	NA	NA
UHGV-0018569_36	Structural annotation	PF19885	NA	NA
UHGV-0018569_38	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0018569_40	PHROG	phrog_1468	transcriptional repressor	transcription regulation
UHGV-0018569_40	UniRef90	UniRef90_A0A1Y3XM81	XRE family transcriptional regulator	NA
UHGV-0018569_40	eggNOG-mapper	1007096.BAGW01000023_gene157	NA	NA
UHGV-0018569_40	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0018569_40	Structural annotation	TIGR03070	NA	NA
UHGV-0018569_43	eggNOG-mapper	1410653.JHVC01000032_gene1036	domain protein	NA
UHGV-0018569_43	COG	COG2333	DNA uptake channel protein ComEC C-terminal domain, metallo-beta-lactamase superfamily	NA
UHGV-0018569_44	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0018569_44	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0018569_44	UniRef90	UniRef90_A0A1C6D4U5	Helix-turn-helix domain	NA
UHGV-0018569_44	eggNOG-mapper	665956.HMPREF1032_02614	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0018569_44	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0018569_44	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0018569_46	Structural annotation	PF13560, MF_00535, TIGR03070, COG1396	NA	NA
UHGV-0018569_47	KOfam	K14059	int; integrase	NA
UHGV-0018569_47	PHROG	phrog_1	integrase	integration and excision
UHGV-0018569_47	UniRef90	UniRef90_A0A174DBH0	Site-specific tyrosine recombinase XerC	NA
UHGV-0018569_47	eggNOG-mapper	641112.ACOK01000111_gene1860	Phage integrase family	NA
UHGV-0018569_47	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0018569_47	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0018569_47	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0018569_48	UniRef90	UniRef90_A0A843GWV6	Rubrerythrin domain-containing protein	NA
UHGV-0018569_51	Structural annotation	PF16509, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0018569_52	eggNOG-mapper	693746.OBV_01590	NA	NA
UHGV-0018569_52	Pfam	PF18812	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease3	PBECR3
UHGV-0018569_53	eggNOG-mapper	693746.OBV_01600	NA	NA
UHGV-0018569_54	eggNOG-mapper	693746.OBV_01730	NA	NA
UHGV-0018569_54	Structural annotation	PF11650	NA	NA
UHGV-0018569_55	UniRef90	UniRef90_A0A4D7ASB8	NA	NA
UHGV-0018569_55	eggNOG-mapper	693746.OBV_01680	NA	NA