UHGV-0018582

Genome information

Genome length 49,309 bps

CDS count 80

Completeness 99.90% (high-quality)

geNomad score 0.9762

Prediction confidence Confident

Genome information
Genome ID	UHGV-0018582
vOTU ID	vOTU-072906
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-A-D_M_24_1194__NODE_1426_length_49309_cov_13.369760
BioSample	SAMEA4765653
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9762
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	52.85
Jumbo phage	No

Genome content
Genome length	49,309 bps
GC content	54.37%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	80
CDS density	94.46%
Average CDS length	585.53 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0018582_2	PHROG	phrog_3266	tail completion	connector
UHGV-0018582_2	eggNOG-mapper	663278.Ethha_0098	NA	NA
UHGV-0018582_2	Structural annotation	PF12691	NA	NA
UHGV-0018582_3	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0018582_3	eggNOG-mapper	1140001.I571_02113	Minor capsid protein	NA
UHGV-0018582_3	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0018582_3	Structural annotation	PF11114	NA	NA
UHGV-0018582_4	Pfam	PF20536	NA	DUF6751
UHGV-0018582_4	Structural annotation	PF20536, COG1853	NA	NA
UHGV-0018582_6	PHROG	phrog_283	major head protein	head and packaging
UHGV-0018582_6	UniRef90	UniRef90_A0A1C6I0L7	p22 coat protein-gene protein 5	NA
UHGV-0018582_6	eggNOG-mapper	1499683.CCFF01000014_gene3908	P22 coat protein - gene protein 5	NA
UHGV-0018582_6	Pfam	PF11651	P22 coat protein - gene protein 5	P22_CoatProtein
UHGV-0018582_6	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0018582_7	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0018582_7	UniRef90	UniRef90_A0A6H2H429	NA	NA
UHGV-0018582_7	eggNOG-mapper	1499683.CCFF01000014_gene3909	NA	NA
UHGV-0018582_7	Pfam	PF14265	NA	DUF4355
UHGV-0018582_11	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0018582_11	UniRef90	UniRef90_A0A136WBX5	Phage minor capsid protein 2	NA
UHGV-0018582_11	eggNOG-mapper	663278.Ethha_0091	NA	NA
UHGV-0018582_11	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0018582_11	COG	COG2369	NA	NA
UHGV-0018582_11	Structural annotation	PF06152, TIGR01641	NA	NA
UHGV-0018582_12	PHROG	phrog_64	portal protein	head and packaging
UHGV-0018582_12	UniRef90	UniRef90_A0A1Y3PKI6	Phage portal protein	NA
UHGV-0018582_12	eggNOG-mapper	1121947.AUHK01000002_gene930	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0018582_12	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0018582_12	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0018582_12	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0018582_13	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0018582_13	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0018582_13	UniRef90	UniRef90_UPI001F15C700	PBSX family phage terminase large subunit	NA
UHGV-0018582_13	eggNOG-mapper	203119.Cthe_2474	Phage terminase, large subunit, PBSX family	NA
UHGV-0018582_13	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0018582_13	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0018582_13	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0018582_13	COG	COG1783	Phage terminase large subunit	NA
UHGV-0018582_13	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0018582_14	PHROG	phrog_2412	NA	unknown function
UHGV-0018582_14	UniRef90	UniRef90_UPI000CF51FBE	KGG domain-containing protein	NA
UHGV-0018582_14	eggNOG-mapper	1123302.KB904167_gene513	Stress-induced bacterial acidophilic repeat motif	NA
UHGV-0018582_16	KOfam	K21527	mom; adenine modification enzyme [EC:2.3.1.-]	NA
UHGV-0018582_16	PHROG	phrog_1384	Mom-like DNA modification protein	other
UHGV-0018582_16	UniRef90	UniRef90_F0SQP3	Phage DNA modification protein	NA
UHGV-0018582_16	eggNOG-mapper	619693.HMPREF6745_2515	NA	NA
UHGV-0018582_16	Structural annotation	PF12568, MF_02018, NF000115, COG3818	NA	NA
UHGV-0018582_17	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0018582_17	PHROG	phrog_620	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0018582_17	UniRef90	UniRef90_A0A853JKN5	ParB N-terminal domain-containing protein	NA
UHGV-0018582_17	eggNOG-mapper	508419.F8J155_9CAUD	helicase activity	NA
UHGV-0018582_17	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0018582_17	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0018582_17	Structural annotation	PF02195, TIGR00180, COG5119	NA	NA
UHGV-0018582_18	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0018582_18	Structural annotation	PF05263, TIGR01636	NA	NA
UHGV-0018582_19	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0018582_19	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0018582_19	UniRef90	UniRef90_A0A316R159	Single-stranded DNA-binding protein	NA
UHGV-0018582_19	eggNOG-mapper	1042163.BRLA_c031440	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0018582_19	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0018582_19	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0018582_19	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0018582_19	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0018582_19	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0018582_20	PHROG	phrog_3301	pyrophosphatase	other
UHGV-0018582_20	eggNOG-mapper	755731.Clo1100_1151	Mazg nucleotide pyrophosphohydrolase	NA
UHGV-0018582_20	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0018582_20	Structural annotation	PF08761, COG4508	NA	NA
UHGV-0018582_21	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0018582_21	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0018582_21	UniRef90	UniRef90_A0A1C6E5W1	Methyltransferase	NA
UHGV-0018582_21	eggNOG-mapper	35241.Q9XJE8_BPTU2	helicase activity	NA
UHGV-0018582_21	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0018582_21	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0018582_21	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0018582_22	Structural annotation	PF18892	NA	NA
UHGV-0018582_24	PHROG	phrog_6568	NA	unknown function
UHGV-0018582_24	eggNOG-mapper	428125.CLOLEP_01394	NA	NA
UHGV-0018582_25	UniRef90	UniRef90_A0A374AB28	Thymidylate synthase ThyX	NA
UHGV-0018582_25	eggNOG-mapper	935948.KE386495_gene2250	NA	NA
UHGV-0018582_25	Pfam	PF02511	Thymidylate synthase complementing protein	Thy1
UHGV-0018582_25	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-0018582_28	PHROG	phrog_3392	NA	unknown function
UHGV-0018582_28	eggNOG-mapper	1217710.F969_00044	NA	NA
UHGV-0018582_29	PHROG	phrog_2045	NA	unknown function
UHGV-0018582_29	UniRef90	UniRef90_A0A1T5AKZ9	Protein gp37	NA
UHGV-0018582_29	eggNOG-mapper	1235790.C805_00077	NA	NA
UHGV-0018582_29	Pfam	PF07505	NA	DUF5131
UHGV-0018582_29	COG	COG4422	NA	NA
UHGV-0018582_29	Structural annotation	PF07505, TIGR04471, COG4422	NA	NA
UHGV-0018582_34	PHROG	phrog_24386	NA	unknown function
UHGV-0018582_34	eggNOG-mapper	742740.HMPREF9474_02291	phosphatase activity	NA
UHGV-0018582_34	COG	COG0561	Hydroxymethylpyrimidine pyrophosphatase and other HAD family phosphatases	NA
UHGV-0018582_35	eggNOG-mapper	360911.EAT1b_0016	NA	NA
UHGV-0018582_35	Structural annotation	PF10263	NA	NA
UHGV-0018582_39	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0018582_39	eggNOG-mapper	536233.CLO_1822	NA	NA
UHGV-0018582_39	Structural annotation	PF02075, MF_00034, NF000711, COG0817	NA	NA
UHGV-0018582_40	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0018582_40	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0018582_40	UniRef90	UniRef90_A0A1Q6PWP3	DNA helicase	NA
UHGV-0018582_40	eggNOG-mapper	697281.Mahau_0555	DnaB-like helicase N terminal domain	NA
UHGV-0018582_40	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0018582_40	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0018582_40	COG	COG0305	Replicative DNA helicase	NA
UHGV-0018582_40	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0018582_41	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0018582_41	eggNOG-mapper	720554.Clocl_0687	HNH endonuclease	NA
UHGV-0018582_41	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0018582_41	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0018582_41	Structural annotation	PF14297, TIGR01714, COG3756	NA	NA
UHGV-0018582_42	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0018582_42	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0018582_42	UniRef90	UniRef90_A0A358Q127	MBL fold metallo-hydrolase	NA
UHGV-0018582_42	eggNOG-mapper	768704.Desmer_4477	Metallo-beta-lactamase superfamily	NA
UHGV-0018582_42	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0018582_42	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0018582_42	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0018582_43	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0018582_43	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0018582_43	UniRef90	UniRef90_A0A2N6DJK3	Recombinase	NA
UHGV-0018582_43	eggNOG-mapper	768704.Desmer_4478	RecT family	NA
UHGV-0018582_43	Pfam	PF03837	RecT family	RecT
UHGV-0018582_43	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0018582_43	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0018582_43	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0018582_44	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0018582_44	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0018582_44	UniRef90	UniRef90_A0A1Q9J750	AAA_15 domain-containing protein	NA
UHGV-0018582_44	eggNOG-mapper	290402.Cbei_1619	nuclear chromosome segregation	NA
UHGV-0018582_44	PADLOC	AAA_15	NA	NA
UHGV-0018582_44	Pfam	PF13175	AAA ATPase domain	AAA_15
UHGV-0018582_44	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0018582_44	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0018582_54	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0018582_54	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0018582_54	UniRef90	UniRef90_UPI001E2BDFBE	helix-turn-helix transcriptional regulator	NA
UHGV-0018582_54	eggNOG-mapper	903814.ELI_1263	Helix-turn-helix domain	NA
UHGV-0018582_54	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0018582_54	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0018582_54	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0018582_56	UniRef90	UniRef90_A0A1C6HD04	Helix-turn-helix	NA
UHGV-0018582_56	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0018582_56	Structural annotation	PF13560, MF_00535, NF041951, COG1396	NA	NA
UHGV-0018582_57	PHROG	phrog_2649	endolysin	lysis
UHGV-0018582_57	eggNOG-mapper	2325.TKV_c19430	Peptidoglycan-binding lysin domain	NA
UHGV-0018582_57	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0018582_57	COG	COG1388	LysM repeat	NA
UHGV-0018582_58	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0018582_58	PHROG	phrog_95	integrase	integration and excision
UHGV-0018582_58	UniRef90	UniRef90_A0A3E2VA50	Recombinase family protein	NA
UHGV-0018582_58	eggNOG-mapper	697281.Mahau_2563	resolvase	NA
UHGV-0018582_58	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0018582_58	Pfam	PF07508	Recombinase	Recombinase
UHGV-0018582_58	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0018582_58	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0018582_58	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0018582_59	Structural annotation	PF02255	NA	NA
UHGV-0018582_60	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0018582_62	PHROG	phrog_16490	NA	unknown function
UHGV-0018582_62	eggNOG-mapper	476272.RUMHYD_01770	NA	NA
UHGV-0018582_63	PHROG	phrog_22984	NA	unknown function
UHGV-0018582_64	PHROG	phrog_21718	NA	unknown function
UHGV-0018582_64	eggNOG-mapper	1235790.C805_00058	NA	NA
UHGV-0018582_65	Structural annotation	PF07878, NF041264, COG4710	NA	NA
UHGV-0018582_70	eggNOG-mapper	588581.Cpap_3400	NA	NA
UHGV-0018582_71	PHROG	phrog_937	hemolysin	other
UHGV-0018582_72	PHROG	phrog_14030	NA	unknown function
UHGV-0018582_72	UniRef90	UniRef90_A0A416FZN6	PG_binding_1 domain-containing protein	NA
UHGV-0018582_72	eggNOG-mapper	411461.DORFOR_00720	NA	NA
UHGV-0018582_72	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0018582_72	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0018582_72	Structural annotation	PF01471, PF18342, TIGR02869, TIGR04457, COG4991	NA	NA
UHGV-0018582_73	Structural annotation	PF00927, PF03422, MF_04116, NF040680, COG4326	NA	NA
UHGV-0018582_76	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0018582_76	UniRef90	UniRef90_A0A1Q6PU45	SH3b domain-containing protein	NA
UHGV-0018582_76	eggNOG-mapper	573061.Clocel_3531	Phage minor structural protein	NA
UHGV-0018582_76	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0018582_76	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0018582_76	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0018582_76	COG	COG4926	Phage-related protein	NA
UHGV-0018582_76	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0018582_77	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0018582_77	UniRef90	UniRef90_R5ADI0	Putative phage tail component	NA
UHGV-0018582_77	eggNOG-mapper	931276.Cspa_c07550	tail component	NA
UHGV-0018582_77	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0018582_77	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0018582_77	COG	COG4722	Phage-related protein YomH	NA
UHGV-0018582_77	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0018582_78	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-0018582_78	eggNOG-mapper	411470.RUMGNA_02228	tape measure	NA
UHGV-0018582_78	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0018582_78	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0018582_78	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0018582_79	PHROG	phrog_706	NA	unknown function
UHGV-0018582_79	UniRef90	UniRef90_UPI00156EC658	Gp15 family bacteriophage protein	NA
UHGV-0018582_79	eggNOG-mapper	999413.HMPREF1094_00208	Bacteriophage Gp15 protein	NA
UHGV-0018582_79	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0018582_79	Structural annotation	PF06854	NA	NA