UHGV-0018771

Genome information

vOTU vOTU-020313

Genome length 15,284 bps

CDS count 20

Completeness 52.73% (medium-quality)

geNomad score 0.9773

Prediction confidence Confident

Genome information
Genome ID	UHGV-0018771
vOTU ID	vOTU-020313
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-A-D_G_6_1094__NODE_5294_length_15284_cov_6.835931
BioSample	SAMEA4765554
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	52.73% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9773
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	15.19
Jumbo phage	No

Genome content
Genome length	15,284 bps
GC content	52.43%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	20
CDS density	95.32%
Average CDS length	730.95 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0018771_1	Structural annotation	PF17548	NA	NA
UHGV-0018771_2	Pfam	PF17427	Phage Single-stranded DNA-binding protein	Phi29_Phage_SSB
UHGV-0018771_2	Structural annotation	PF17427	NA	NA
UHGV-0018771_5	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0018771_5	Structural annotation	PF03175, MF_04055, NF004419, COG0417	NA	NA
UHGV-0018771_10	PHROG	phrog_2150	terminase	head and packaging
UHGV-0018771_10	UniRef90	UniRef90_A0A355RJE0	DNA encapsidation protein	NA
UHGV-0018771_10	eggNOG-mapper	338473.A6XAE1_9CAUD	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-0018771_10	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0018771_10	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0018771_13	PHROG	phrog_2006	major head protein	head and packaging
UHGV-0018771_13	UniRef90	UniRef90_A6XAD5	Head protein	NA
UHGV-0018771_13	eggNOG-mapper	338473.A6XAD5_9CAUD	viral capsid	NA
UHGV-0018771_13	Structural annotation	PF19821, PF02368, MF_04119, NF033394, COG1659	NA	NA
UHGV-0018771_14	PHROG	phrog_2248	tail protein	tail
UHGV-0018771_14	UniRef90	UniRef90_A0A6G5YMA6	Caud_tail_N domain-containing protein	NA
UHGV-0018771_14	eggNOG-mapper	338473.A6XAD6_9CAUD	NA	NA
UHGV-0018771_14	Structural annotation	PF20934, PF16838	NA	NA
UHGV-0018771_16	PHROG	phrog_2038	upper collar connector	connector
UHGV-0018771_16	UniRef90	UniRef90_A0A345BNP3	Upper collar protein	NA
UHGV-0018771_16	eggNOG-mapper	10756.PORTL_BPPH2	Phage Connector (GP10)	NA
UHGV-0018771_16	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0018771_16	Structural annotation	PF05352, TIGR01538, COG4695	NA	NA
UHGV-0018771_18	PHROG	phrog_199	holin	lysis
UHGV-0018771_18	UniRef90	UniRef90_UPI001C109117	phage holin family protein	NA
UHGV-0018771_18	eggNOG-mapper	1437610.BREU_1264	Bacteriophage holin family	NA
UHGV-0018771_18	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0018771_18	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA