UHGV-0018804

Genome information

Genome length 40,728 bps

CDS count 48

Completeness 99.90% (high-quality)

geNomad score 0.9724

Prediction confidence Confident

Genome information
Genome ID	UHGV-0018804
vOTU ID	vOTU-011675
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-A-D_F_4_1629__NODE_1276_length_40728_cov_14.100662
BioSample	SAMEA4765909
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9724
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.14
Jumbo phage	No

Genome content
Genome length	40,728 bps
GC content	59.26%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	85.79%
Average CDS length	729.56 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0018804_1	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0018804_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0018804_1	UniRef90	UniRef90_UPI001EDA9EB9	site-specific integrase	NA
UHGV-0018804_1	eggNOG-mapper	742727.HMPREF9447_04802	Arm DNA-binding domain	NA
UHGV-0018804_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0018804_1	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0018804_1	Structural annotation	PF00589, PF17293, PF13102, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0018804_4	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0018804_4	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0018804_4	UniRef90	UniRef90_UPI001F25F646	HNH endonuclease	NA
UHGV-0018804_4	eggNOG-mapper	266762.HQ36_02070	HNH endonuclease	NA
UHGV-0018804_4	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0018804_4	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0018804_5	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0018804_6	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0018804_6	UniRef90	UniRef90_UPI000D0F097C	terminase large subunit	NA
UHGV-0018804_6	eggNOG-mapper	266762.HQ36_02085	Phage Terminase	NA
UHGV-0018804_6	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0018804_6	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0018804_6	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0018804_6	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0018804_8	PHROG	phrog_12	portal protein	head and packaging
UHGV-0018804_8	UniRef90	UniRef90_UPI000ED02F94	phage portal protein	NA
UHGV-0018804_8	eggNOG-mapper	990285.RGCCGE502_05065	portal protein	NA
UHGV-0018804_8	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0018804_8	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0018804_8	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0018804_8	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0018804_9	KOfam	K06904	NA	NA
UHGV-0018804_9	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0018804_9	UniRef90	UniRef90_D3I9W0	HK97 family phage prohead protease	NA
UHGV-0018804_9	eggNOG-mapper	1236514.BAKL01000051_gene3697	Caudovirus prohead serine protease	NA
UHGV-0018804_9	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0018804_9	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0018804_9	COG	COG3740	Phage head maturation protease	NA
UHGV-0018804_9	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0018804_10	PHROG	phrog_10	major head protein	head and packaging
UHGV-0018804_10	UniRef90	UniRef90_UPI000EF03BFB	phage major capsid protein	NA
UHGV-0018804_10	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0018804_10	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0018804_10	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0018804_10	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0018804_11	PHROG	phrog_1407	major tail protein	tail
UHGV-0018804_11	UniRef90	UniRef90_J9DC54	Phage major tail protein	NA
UHGV-0018804_11	eggNOG-mapper	742727.HMPREF9447_01700	Phage tail tube protein	NA
UHGV-0018804_11	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0018804_11	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0018804_12	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0018804_12	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0018804_13	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0018804_13	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0018804_14	eggNOG-mapper	880074.BARVI_02460	Leucine rich repeats (6 copies)	NA
UHGV-0018804_14	Pfam	PF18998	Divergent InlB B-repeat domain	Flg_new_2
UHGV-0018804_14	COG	COG4870	Cysteine protease, C1A family	NA
UHGV-0018804_14	Structural annotation	PF12691, PF18998	NA	NA
UHGV-0018804_15	eggNOG-mapper	1122991.BAIZ01000014_gene1247	NA	NA
UHGV-0018804_16	PHROG	phrog_16333	NA	unknown function
UHGV-0018804_16	eggNOG-mapper	1236497.BAJQ01000020_gene1852	NA	NA
UHGV-0018804_16	Structural annotation	PF09550	NA	NA
UHGV-0018804_17	Structural annotation	PF06763, TIGR01725	NA	NA
UHGV-0018804_19	PHROG	phrog_24676	tail length tape measure protein	tail
UHGV-0018804_19	UniRef90	UniRef90_A0A2N6Q6V0	Phage tail tape measure protein	NA
UHGV-0018804_19	eggNOG-mapper	1122989.KB898607_gene43	nuclear chromosome segregation	NA
UHGV-0018804_19	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0018804_21	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0018804_21	PHROG	phrog_822	amidase	lysis
UHGV-0018804_21	UniRef90	UniRef90_A0A3C1E3T6	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0018804_21	eggNOG-mapper	991.IW20_20040	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0018804_21	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0018804_21	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0018804_21	Structural annotation	PF01510, MF_04111, NF008758, COG3023	NA	NA
UHGV-0018804_22	eggNOG-mapper	537007.BLAHAN_05239	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0018804_22	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0018804_22	Structural annotation	PF20010	NA	NA
UHGV-0018804_25	PHROG	phrog_26822	NA	unknown function
UHGV-0018804_25	eggNOG-mapper	742727.HMPREF9447_04846	Phage minor structural protein	NA
UHGV-0018804_25	COG	COG4926	Phage-related protein	NA
UHGV-0018804_25	Structural annotation	PF03921	NA	NA
UHGV-0018804_26	eggNOG-mapper	1122991.BAIZ01000014_gene1242	NA	NA
UHGV-0018804_26	Structural annotation	PF05113, TIGR03361, COG4379	NA	NA
UHGV-0018804_27	PHROG	phrog_8278	NA	unknown function
UHGV-0018804_27	UniRef90	UniRef90_UPI0004833697	YrzE family protein	NA
UHGV-0018804_27	eggNOG-mapper	411901.BACCAC_01121	NA	NA
UHGV-0018804_28	UniRef90	UniRef90_A0A374C3F0	NA	NA
UHGV-0018804_28	eggNOG-mapper	862515.HMPREF0658_1284	NA	NA
UHGV-0018804_28	Pfam	PF16476	NA	DUF5053
UHGV-0018804_28	Structural annotation	PF16476	NA	NA
UHGV-0018804_29	PHROG	phrog_21498	NA	unknown function
UHGV-0018804_29	UniRef90	UniRef90_J9FHV4	ParB-like nuclease	NA
UHGV-0018804_29	eggNOG-mapper	865938.Weevi_0265	DNA binding	NA
UHGV-0018804_29	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0018804_29	Structural annotation	PF05869, TIGR01712	NA	NA
UHGV-0018804_33	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0018804_33	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0018804_33	UniRef90	UniRef90_A0A2N6Q706	MBL fold hydrolase	NA
UHGV-0018804_33	eggNOG-mapper	449673.BACSTE_02214	Metallo-beta-lactamase superfamily	NA
UHGV-0018804_33	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0018804_33	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0018804_33	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0018804_34	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0018804_34	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0018804_34	UniRef90	UniRef90_UPI00068D7064	recombinase RecT	NA
UHGV-0018804_34	eggNOG-mapper	1392486.JIAF01000004_gene2637	RecT family	NA
UHGV-0018804_34	Pfam	PF03837	RecT family	RecT
UHGV-0018804_34	NCBIFam	TIGR01965.1	VCBS domain-containing protein	NA
UHGV-0018804_34	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0018804_34	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0018804_37	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0018804_37	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0018804_37	UniRef90	UniRef90_UPI001D14CE70	AAA family ATPase	NA
UHGV-0018804_37	eggNOG-mapper	1392486.JIAF01000004_gene2636	AAA domain	NA
UHGV-0018804_37	Pfam	PF13476	AAA domain	AAA_23
UHGV-0018804_37	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0018804_37	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0018804_40	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0018804_40	eggNOG-mapper	1122973.KB904237_gene180	NA	NA
UHGV-0018804_40	Structural annotation	PF20024, MF_01819, NF041413, COG5529	NA	NA
UHGV-0018804_45	eggNOG-mapper	1227276.HMPREF9148_01940	Transcriptional regulator	NA
UHGV-0018804_45	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA