UHGV-0018835

Genome information

Genome length 35,764 bps

CDS count 49

Completeness 99.56% (high-quality)

geNomad score 0.9672

Prediction confidence Confident

Genome information
Genome ID	UHGV-0018835
vOTU ID	vOTU-060221
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_E_1_1719__NODE_2321_length_35764_cov_35.238798
BioSample	SAMEA4765999
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.56% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9672
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	44.09
Jumbo phage	No

Genome content
Genome length	35,764 bps
GC content	56.05%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	93.80%
Average CDS length	690.12 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0018835_1	UniRef90	UniRef90_A0A1C6H6I9	Phage terminase, small subunit	NA
UHGV-0018835_1	eggNOG-mapper	1033744.CAEL01000029_gene1286	Phage terminase, small subunit	NA
UHGV-0018835_1	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0018835_1	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0018835_2	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0018835_2	UniRef90	UniRef90_A0A1Y4R6J8	Terminase	NA
UHGV-0018835_2	eggNOG-mapper	1226322.HMPREF1545_00113	Phage Terminase	NA
UHGV-0018835_2	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0018835_2	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0018835_2	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0018835_2	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-0018835_3	PHROG	phrog_12	portal protein	head and packaging
UHGV-0018835_3	UniRef90	UniRef90_U2SKC6	Phage portal protein, HK97 family	NA
UHGV-0018835_3	eggNOG-mapper	1226322.HMPREF1545_00114	Phage portal protein, HK97 family	NA
UHGV-0018835_3	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0018835_3	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0018835_3	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0018835_3	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0018835_4	KOfam	K06904	NA	NA
UHGV-0018835_4	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0018835_4	UniRef90	UniRef90_A0A1F2PDD9	Caudovirus prohead protease	NA
UHGV-0018835_4	eggNOG-mapper	398512.JQKC01000009_gene450	Phage prohead protease, HK97 family	NA
UHGV-0018835_4	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0018835_4	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0018835_4	COG	COG3740	Phage head maturation protease	NA
UHGV-0018835_4	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0018835_5	PHROG	phrog_10	major head protein	head and packaging
UHGV-0018835_5	UniRef90	UniRef90_A0A1C6H720	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0018835_5	eggNOG-mapper	1226322.HMPREF1545_00116	phage major capsid protein, HK97 family	NA
UHGV-0018835_5	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0018835_5	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0018835_5	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0018835_5	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0018835_6	PHROG	phrog_2550	NA	unknown function
UHGV-0018835_6	UniRef90	UniRef90_UPI0008717716	phage head-tail connector protein	NA
UHGV-0018835_6	eggNOG-mapper	1226322.HMPREF1545_00117	NA	NA
UHGV-0018835_6	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0018835_7	PHROG	phrog_19734	NA	unknown function
UHGV-0018835_7	UniRef90	UniRef90_A0A316NL63	Head-tail adaptor protein	NA
UHGV-0018835_7	eggNOG-mapper	33035.JPJF01000039_gene275	NA	NA
UHGV-0018835_7	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0018835_8	eggNOG-mapper	999413.HMPREF1094_02005	NA	NA
UHGV-0018835_9	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0018835_9	UniRef90	UniRef90_A0A1C6CIQ6	Phage protein, HK97 gp10 family	NA
UHGV-0018835_9	eggNOG-mapper	908340.HMPREF9406_2573	NA	NA
UHGV-0018835_9	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0018835_9	Structural annotation	TIGR01725	NA	NA
UHGV-0018835_10	PHROG	phrog_88	major tail protein	tail
UHGV-0018835_10	UniRef90	UniRef90_A0A1C6CIL7	Phage major tail protein, phi13 family	NA
UHGV-0018835_10	eggNOG-mapper	33035.JPJF01000039_gene278	NA	NA
UHGV-0018835_10	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0018835_10	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0018835_11	Structural annotation	PF11836	NA	NA
UHGV-0018835_12	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-0018835_12	PHROG	phrog_23464	NA	unknown function
UHGV-0018835_12	eggNOG-mapper	1232452.BAIB02000007_gene1616	phage tail tape measure protein	NA
UHGV-0018835_12	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0018835_12	Structural annotation	PF02050	NA	NA
UHGV-0018835_13	PHROG	phrog_1194	NA	unknown function
UHGV-0018835_13	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0018835_14	PHROG	phrog_13879	NA	unknown function
UHGV-0018835_14	eggNOG-mapper	1007103.AFHW01000096_gene3259	NA	NA
UHGV-0018835_14	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0018835_15	PHROG	phrog_18725	NA	unknown function
UHGV-0018835_15	eggNOG-mapper	1226322.HMPREF1545_00062	NA	NA
UHGV-0018835_17	Structural annotation	PF21722	NA	NA
UHGV-0018835_20	PHROG	phrog_4105	NA	unknown function
UHGV-0018835_21	PHROG	phrog_443	holin	lysis
UHGV-0018835_21	UniRef90	UniRef90_UPI000C088FD8	holin	NA
UHGV-0018835_21	eggNOG-mapper	1235800.C819_01425	Putative lactococcus lactis phage r1t holin	NA
UHGV-0018835_21	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0018835_21	Structural annotation	PF16945	NA	NA
UHGV-0018835_22	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0018835_22	PHROG	phrog_20388	endolysin	lysis
UHGV-0018835_22	UniRef90	UniRef90_UPI001C3C0D1C	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0018835_22	eggNOG-mapper	1226322.HMPREF1545_03576	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0018835_22	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0018835_22	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0018835_22	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0018835_23	UniRef90	UniRef90_A0A1Q9JGI6	RHH_1 domain-containing protein	NA
UHGV-0018835_23	eggNOG-mapper	1033733.CAEK01000007_gene1628	NA	NA
UHGV-0018835_24	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0018835_24	UniRef90	UniRef90_UPI0009EB5089	helix-turn-helix domain-containing protein	NA
UHGV-0018835_24	eggNOG-mapper	665956.HMPREF1032_01619	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0018835_24	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0018835_24	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0018835_24	Structural annotation	PF13443, NF041951, COG3655	NA	NA
UHGV-0018835_25	PHROG	phrog_6802	NA	unknown function
UHGV-0018835_25	eggNOG-mapper	592026.GCWU0000282_002540	NA	NA
UHGV-0018835_27	KOfam	K01494	dcd; dCTP deaminase [EC:3.5.4.13]	NA
UHGV-0018835_27	PHROG	phrog_1663	dCTP deaminase	DNA, RNA and nucleotide metabolism
UHGV-0018835_27	UniRef90	UniRef90_A0A353Z6H0	dCTP deaminase, dUMP-forming	NA
UHGV-0018835_27	eggNOG-mapper	1121335.Clst_0069	TIGRFAM deoxycytidine triphosphate deaminase	NA
UHGV-0018835_27	NCBIFam	TIGR02274.1	dCTP deaminase	NA
UHGV-0018835_27	COG	COG0717	dCTP deaminase	NA
UHGV-0018835_27	Structural annotation	PF06559, MF_00146, TIGR02274, COG0717	NA	NA
UHGV-0018835_28	eggNOG-mapper	411459.RUMOBE_02302	WYL domain	NA
UHGV-0018835_28	COG	COG2378	Predicted DNA-binding transcriptional regulator YobV, contains HTH and WYL domains	NA
UHGV-0018835_30	PHROG	phrog_22543	NA	unknown function
UHGV-0018835_32	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0018835_32	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0018835_32	UniRef90	UniRef90_F4LTU1	SNF2-related protein	NA
UHGV-0018835_32	eggNOG-mapper	1209989.TepiRe1_2619	SNF2 family N-terminal domain	NA
UHGV-0018835_32	PADLOC	ZorD1_00007	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0018835_32	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0018835_32	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0018835_32	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0018835_32	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-0018835_33	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0018835_33	UniRef90	UniRef90_A0A1Y4MPX2	VRR-NUC domain-containing protein	NA
UHGV-0018835_33	eggNOG-mapper	1157490.EL26_01810	VRR_NUC	NA
UHGV-0018835_33	Structural annotation	PF01974, MF_01490, NF011269	NA	NA
UHGV-0018835_34	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0018835_34	UniRef90	UniRef90_UPI00101C9F44	virulence-associated E family protein	NA
UHGV-0018835_34	eggNOG-mapper	1262914.BN533_00796	Virulence-associated protein E	NA
UHGV-0018835_34	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-0018835_34	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-0018835_34	Structural annotation	PF05272, MF_04000, NF005477, NF040562, COG5545	NA	NA
UHGV-0018835_35	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-0018835_35	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0018835_35	UniRef90	UniRef90_A0A3R6MB25	INTEIN_C_TER domain-containing protein	NA
UHGV-0018835_35	eggNOG-mapper	1235802.C823_01560	DNA polymerase	NA
UHGV-0018835_35	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-0018835_35	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-0018835_35	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-0018835_36	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0018835_36	UniRef90	UniRef90_UPI00080DDF7D	NA	NA
UHGV-0018835_36	eggNOG-mapper	1217713.F993_01675	NA	NA
UHGV-0018835_36	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-0018835_36	Structural annotation	PF10991, MF_04153	NA	NA
UHGV-0018835_37	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0018835_37	UniRef90	UniRef90_UPI000378D131	NA	NA
UHGV-0018835_37	eggNOG-mapper	1265507.KB899640_gene14	NA	NA
UHGV-0018835_37	Pfam	PF10926	NA	DUF2800
UHGV-0018835_37	COG	COG2887	RecB family exonuclease	NA
UHGV-0018835_37	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0018835_40	Structural annotation	PF12728	NA	NA
UHGV-0018835_42	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0018835_42	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0018835_42	UniRef90	UniRef90_R5GZQ0	Helix-turn-helix protein	NA
UHGV-0018835_42	eggNOG-mapper	1235797.C816_03553	DNA-binding helix-turn-helix protein	NA
UHGV-0018835_42	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0018835_42	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0018835_42	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0018835_44	KOfam	K14059	int; integrase	NA
UHGV-0018835_44	PHROG	phrog_1	integrase	integration and excision
UHGV-0018835_44	UniRef90	UniRef90_A0A8F2JBJ7	Site-specific integrase	NA
UHGV-0018835_44	eggNOG-mapper	1203606.HMPREF1526_00215	Phage integrase family	NA
UHGV-0018835_44	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0018835_44	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0018835_44	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0018835_49	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0018835_49	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0018835_49	UniRef90	UniRef90_U4QWM3	HNH endonuclease	NA
UHGV-0018835_49	eggNOG-mapper	588581.Cpap_1277	HNH nucleases	NA
UHGV-0018835_49	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0018835_49	Structural annotation	TIGR02646	NA	NA