UHGV-0018868

Genome information

vOTU vOTU-020325

Genome length 40,684 bps

CDS count 67

Completeness 76.72% (medium-quality)

geNomad score 0.9766

Prediction confidence Confident

Genome information
Genome ID	UHGV-0018868
vOTU ID	vOTU-020325
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-A-D_I_8_1124__NODE_1166_length_40684_cov_18.752777
BioSample	SAMEA4765584
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	76.72% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	30
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9766
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	64.35
Jumbo phage	No

Genome content
Genome length	40,684 bps
GC content	41.49%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	67
CDS density	93.33%
Average CDS length	570.09 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0018868_3	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0018868_7	PHROG	phrog_35298	NA	unknown function
UHGV-0018868_9	Structural annotation	PF19807, NF010256, COG4453	NA	NA
UHGV-0018868_11	Structural annotation	PF08281, MF_00245, NF001075, COG2739	NA	NA
UHGV-0018868_14	PHROG	phrog_918	NA	unknown function
UHGV-0018868_14	UniRef90	UniRef90_UPI001D017B4D	NA	NA
UHGV-0018868_14	eggNOG-mapper	357809.Cphy_2966	NA	NA
UHGV-0018868_14	Pfam	PF19791	NA	DUF6275
UHGV-0018868_14	Structural annotation	PF19791	NA	NA
UHGV-0018868_15	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0018868_15	UniRef90	UniRef90_A0A3E2TS79	NA	NA
UHGV-0018868_15	eggNOG-mapper	411473.RUMCAL_00360	NA	NA
UHGV-0018868_15	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-0018868_16	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0018868_16	PHROG	phrog_435	endolysin	lysis
UHGV-0018868_16	UniRef90	UniRef90_UPI001D01042A	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0018868_16	eggNOG-mapper	568816.Acin_1950	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0018868_16	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0018868_16	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0018868_16	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0018868_17	eggNOG-mapper	1127695.HMPREF9163_01278	NA	NA
UHGV-0018868_20	eggNOG-mapper	1200557.JHWV01000001_gene254	NA	NA
UHGV-0018868_21	PHROG	phrog_1197	tail protein	tail
UHGV-0018868_22	PHROG	phrog_5181	NA	unknown function
UHGV-0018868_22	eggNOG-mapper	658086.HMPREF0994_02285	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0018868_22	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0018868_23	eggNOG-mapper	279010.BL03810	Phage tail-collar fibre protein	NA
UHGV-0018868_23	Structural annotation	PF12571	NA	NA
UHGV-0018868_24	PHROG	phrog_521	tail protein	tail
UHGV-0018868_24	eggNOG-mapper	608534.GCWU000341_02276	NA	NA
UHGV-0018868_24	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0018868_24	COG	COG4385	Bacteriophage P2-related tail formation protein	NA
UHGV-0018868_24	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-0018868_25	PHROG	phrog_6	baseplate protein	tail
UHGV-0018868_25	UniRef90	UniRef90_A0A0K8JF37	Baseplate_J domain-containing protein	NA
UHGV-0018868_25	eggNOG-mapper	1123511.KB905868_gene166	Baseplate J-like protein	NA
UHGV-0018868_25	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0018868_25	COG	COG3299	NA	NA
UHGV-0018868_25	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0018868_26	PHROG	phrog_120	baseplate protein	tail
UHGV-0018868_26	UniRef90	UniRef90_UPI001959D5C6	NA	NA
UHGV-0018868_26	eggNOG-mapper	1123511.KB905868_gene167	NA	NA
UHGV-0018868_26	Pfam	PF10934	NA	DUF2634
UHGV-0018868_26	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0018868_26	Structural annotation	PF10934, TIGR03357, COG3628	NA	NA
UHGV-0018868_27	PHROG	phrog_579	NA	unknown function
UHGV-0018868_27	UniRef90	UniRef90_UPI0018C6B22F	NA	NA
UHGV-0018868_27	eggNOG-mapper	1123511.KB905868_gene168	NA	NA
UHGV-0018868_27	Pfam	PF10844	NA	DUF2577
UHGV-0018868_27	Structural annotation	PF10844	NA	NA
UHGV-0018868_28	PHROG	phrog_400	tail protein	tail
UHGV-0018868_28	UniRef90	UniRef90_UPI001E28BB91	hydrolase	NA
UHGV-0018868_28	eggNOG-mapper	1123511.KB905868_gene169	PFAM Phage late control gene D protein (GPD)	NA
UHGV-0018868_28	COG	COG4193	Beta- N-acetylglucosaminidase	NA
UHGV-0018868_29	PHROG	phrog_380	endolysin	lysis
UHGV-0018868_29	UniRef90	UniRef90_A0A4R1PW24	LysM domain-containing protein	NA
UHGV-0018868_29	eggNOG-mapper	1123511.KB905868_gene170	PFAM LysM domain	NA
UHGV-0018868_29	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0018868_29	Structural annotation	PF21821, TIGR02126, COG3499	NA	NA
UHGV-0018868_31	PHROG	phrog_1068	tail length tape measure protein	tail
UHGV-0018868_31	UniRef90	UniRef90_UPI00142FDB3B	tape measure protein	NA
UHGV-0018868_31	eggNOG-mapper	1111454.HMPREF1250_0164	tape measure	NA
UHGV-0018868_31	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0018868_31	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0018868_31	COG	COG5281	Phage-related minor tail protein	NA
UHGV-0018868_31	Structural annotation	PF20155, MF_04138, TIGR02675, COG3941	NA	NA
UHGV-0018868_32	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-0018868_32	UniRef90	UniRef90_UPI0015F3E6D8	phage portal protein	NA
UHGV-0018868_32	eggNOG-mapper	1123511.KB905868_gene173	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-0018868_32	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0018868_32	Structural annotation	PF08890, COG4518	NA	NA
UHGV-0018868_33	PHROG	phrog_365	tail protein	tail
UHGV-0018868_33	UniRef90	UniRef90_UPI0015F66976	phage tail tube protein	NA
UHGV-0018868_33	eggNOG-mapper	1123511.KB905868_gene174	Phage tail tube protein	NA
UHGV-0018868_33	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0018868_33	Structural annotation	PF09393, TIGR02241, COG5437	NA	NA
UHGV-0018868_34	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0018868_34	UniRef90	UniRef90_C9KJA8	dUTP diphosphatase	NA
UHGV-0018868_34	eggNOG-mapper	500635.MITSMUL_03105	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-0018868_34	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0018868_34	Structural annotation	PF17375	NA	NA
UHGV-0018868_35	PHROG	phrog_279	tail sheath	tail
UHGV-0018868_35	UniRef90	UniRef90_UPI0003684E26	phage tail sheath family protein	NA
UHGV-0018868_35	eggNOG-mapper	1123511.KB905868_gene175	Phage tail sheath C-terminal domain	NA
UHGV-0018868_35	Pfam	PF17481	Phage tail sheath protein beta-sandwich domain	Phage_sheath_1N
UHGV-0018868_35	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0018868_35	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0018868_35	Structural annotation	PF17482, PF04984, PF17481, COG4386	NA	NA
UHGV-0018868_36	PHROG	phrog_966	NA	unknown function
UHGV-0018868_36	eggNOG-mapper	642492.Clole_2751	NA	NA
UHGV-0018868_37	PHROG	phrog_525	NA	unknown function
UHGV-0018868_37	UniRef90	UniRef90_T3D6E7	Putative phage protein	NA
UHGV-0018868_37	eggNOG-mapper	1123511.KB905868_gene177	NA	NA
UHGV-0018868_37	Pfam	PF20765	NA	DUF6838
UHGV-0018868_37	Structural annotation	PF20765, COG5003	NA	NA
UHGV-0018868_38	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0018868_38	UniRef90	UniRef90_UPI00056C0811	HK97 gp10 family phage protein	NA
UHGV-0018868_38	eggNOG-mapper	1203606.HMPREF1526_00328	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0018868_38	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0018868_38	Structural annotation	PF04883, TIGR01725, COG5005	NA	NA
UHGV-0018868_39	PHROG	phrog_615	head-tail adaptor	connector
UHGV-0018868_39	UniRef90	UniRef90_UPI000ACDB421	ABC transporter ATP-binding protein	NA
UHGV-0018868_39	eggNOG-mapper	1123511.KB905868_gene179	NA	NA
UHGV-0018868_39	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-0018868_40	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0018868_40	UniRef90	UniRef90_UPI00056D9D64	phage head-tail connector protein	NA
UHGV-0018868_40	eggNOG-mapper	1123511.KB905868_gene180	NA	NA
UHGV-0018868_40	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0018868_40	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0018868_41	PHROG	phrog_29	major head protein	head and packaging
UHGV-0018868_41	UniRef90	UniRef90_UPI001D6AA5E6	major capsid protein	NA
UHGV-0018868_41	eggNOG-mapper	1232443.BAIA02000078_gene29	Phage major capsid protein E	NA
UHGV-0018868_41	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0018868_41	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0018868_42	PHROG	phrog_909	major head protein	head and packaging
UHGV-0018868_42	UniRef90	UniRef90_K1TUL5	NA	NA
UHGV-0018868_42	eggNOG-mapper	1449343.JQLQ01000002_gene1522	NA	NA
UHGV-0018868_42	Structural annotation	PF02924	NA	NA
UHGV-0018868_43	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0018868_43	UniRef90	UniRef90_UPI001AEAD020	phage scaffolding protein	NA
UHGV-0018868_43	eggNOG-mapper	1408823.AXUS01000024_gene2715	Phage minor structural protein GP20	NA
UHGV-0018868_43	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0018868_43	Structural annotation	PF06810	NA	NA
UHGV-0018868_44	PHROG	phrog_3675	NA	unknown function
UHGV-0018868_44	UniRef90	UniRef90_A0A1G4FHU6	YjcQ protein	NA
UHGV-0018868_44	eggNOG-mapper	1235799.C818_04221	YjcQ protein	NA
UHGV-0018868_44	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-0018868_44	Structural annotation	PF09639, TIGR04176, COG2345	NA	NA
UHGV-0018868_47	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0018868_47	UniRef90	UniRef90_UPI001C00E771	minor capsid protein	NA
UHGV-0018868_47	eggNOG-mapper	742740.HMPREF9474_02356	Phage head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0018868_47	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0018868_47	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0018868_47	COG	COG2369	NA	NA
UHGV-0018868_47	Structural annotation	PF03496, PF04233, MF_04141, NF041404, TIGR01641, COG2369	NA	NA
UHGV-0018868_48	PHROG	phrog_64	portal protein	head and packaging
UHGV-0018868_48	UniRef90	UniRef90_H1CAJ0	SPP1 family phage portal protein	NA
UHGV-0018868_48	eggNOG-mapper	1408823.AXUS01000024_gene2713	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0018868_48	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0018868_48	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0018868_49	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0018868_49	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0018868_49	UniRef90	UniRef90_A0A413QUA7	PBSX family phage terminase large subunit	NA
UHGV-0018868_49	eggNOG-mapper	1273103.NM10_06806	Phage terminase large subunit	NA
UHGV-0018868_49	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0018868_49	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0018868_49	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0018868_49	COG	COG1783	Phage terminase large subunit	NA
UHGV-0018868_49	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0018868_50	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0018868_50	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0018868_50	UniRef90	UniRef90_UPI000683F496	terminase small subunit	NA
UHGV-0018868_50	eggNOG-mapper	1280706.AUJE01000003_gene2265	terminase, small subunit	NA
UHGV-0018868_50	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0018868_50	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0018868_50	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0018868_51	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0018868_51	eggNOG-mapper	1487921.DP68_08815	NA	NA
UHGV-0018868_51	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-0018868_51	Structural annotation	PF08281, NF008895, COG1595	NA	NA
UHGV-0018868_52	Structural annotation	PF06892, COG1694	NA	NA
UHGV-0018868_54	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0018868_54	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0018868_54	UniRef90	UniRef90_UPI001D01D2F7	DEAD/DEAH box helicase	NA
UHGV-0018868_54	eggNOG-mapper	1123250.KB908413_gene333	SNF2 family	NA
UHGV-0018868_54	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0018868_54	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0018868_54	Structural annotation	PF16203, MF_01494, NF038318, COG0553	NA	NA
UHGV-0018868_60	KOfam	K21919	KCTD9; BTB/POZ domain-containing protein KCTD9	NA
UHGV-0018868_60	PHROG	phrog_923	NA	unknown function
UHGV-0018868_60	Pfam	PF00805	Pentapeptide repeats (8 copies)	Pentapeptide
UHGV-0018868_60	Structural annotation	PF13599, NF011744	NA	NA
UHGV-0018868_61	KOfam	K21919	KCTD9; BTB/POZ domain-containing protein KCTD9	NA
UHGV-0018868_61	PHROG	phrog_923	NA	unknown function
UHGV-0018868_61	Pfam	PF00805	Pentapeptide repeats (8 copies)	Pentapeptide
UHGV-0018868_61	Structural annotation	PF13599, NF033086, COG1357	NA	NA
UHGV-0018868_62	Structural annotation	PF02888	NA	NA
UHGV-0018868_64	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0018868_64	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0018868_64	UniRef90	UniRef90_A0A2K4ZFK2	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0018868_64	eggNOG-mapper	585503.HMPREF7545_1724	Cytosine-specific methyltransferase	NA
UHGV-0018868_64	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-0018868_64	Pfam	PF14890	Intein splicing domain	Intein_splicing
UHGV-0018868_64	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0018868_64	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0018868_64	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0018868_64	Structural annotation	PF05203, PF00145, MF_01420, NF011287, TIGR00675, COG1372, COG0270	NA	NA