UHGV-0019042

Genome information

Genome length 42,327 bps

CDS count 51

Completeness 98.32% (high-quality)

geNomad score 0.9760

Prediction confidence Confident

Genome information
Genome ID	UHGV-0019042
vOTU ID	vOTU-068402
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_E_1_1719__NODE_1864_length_42327_cov_22.482391
BioSample	SAMEA4765999
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.32% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9760
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	24.25
Jumbo phage	No

Genome content
Genome length	42,327 bps
GC content	59.96%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	92.44%
Average CDS length	771.35 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0019042_1	KOfam	K14059	int; integrase	NA
UHGV-0019042_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0019042_1	UniRef90	UniRef90_A0A3D4D8C4	Integrase	NA
UHGV-0019042_1	eggNOG-mapper	742738.HMPREF9460_00840	Belongs to the 'phage' integrase family	NA
UHGV-0019042_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0019042_1	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0019042_1	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0019042_2	UniRef90	UniRef90_R6VLW3	HTH cro/C1-type domain-containing protein	NA
UHGV-0019042_2	eggNOG-mapper	445971.ANASTE_00175	NA	NA
UHGV-0019042_2	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0019042_2	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0019042_3	UniRef90	UniRef90_A0A1G5CPU3	Cro/C1-type HTH DNA-binding domain-containing protein	NA
UHGV-0019042_3	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0019042_6	eggNOG-mapper	742738.HMPREF9460_00848	NA	NA
UHGV-0019042_6	Structural annotation	PF12728, TIGR01764	NA	NA
UHGV-0019042_9	PHROG	phrog_36399	NA	unknown function
UHGV-0019042_9	eggNOG-mapper	1226322.HMPREF1545_00099	NA	NA
UHGV-0019042_10	PHROG	phrog_8470	NA	unknown function
UHGV-0019042_10	UniRef90	UniRef90_UPI0019580896	PcfJ domain-containing protein	NA
UHGV-0019042_10	eggNOG-mapper	1226322.HMPREF1545_00100	PcfJ-like protein	NA
UHGV-0019042_10	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0019042_10	Structural annotation	PF14284	NA	NA
UHGV-0019042_11	PHROG	phrog_15609	NA	unknown function
UHGV-0019042_11	UniRef90	UniRef90_UPI001C102D5E	NA	NA
UHGV-0019042_11	eggNOG-mapper	693746.OBV_24000	NA	NA
UHGV-0019042_11	Pfam	PF11300	NA	DUF3102
UHGV-0019042_11	COG	COG2433	Possible nuclease of RNase H fold, RuvC/YqgF family	NA
UHGV-0019042_11	Structural annotation	PF11300, PF15591, PF07321, NF038070, NF008636, COG4568	NA	NA
UHGV-0019042_12	Structural annotation	PF02559, MF_00667, COG0231	NA	NA
UHGV-0019042_13	PHROG	phrog_3136	NA	unknown function
UHGV-0019042_13	UniRef90	UniRef90_A0A3D0HBD2	ASCH domain-containing protein	NA
UHGV-0019042_13	eggNOG-mapper	642492.Clole_1416	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0019042_13	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0019042_13	Structural annotation	PF04266, MF_00684, NF008917, COG4933	NA	NA
UHGV-0019042_14	PHROG	phrog_799	DNA methyltransferase	other
UHGV-0019042_14	UniRef90	UniRef90_UPI000AAF359D	SAM-dependent DNA methyltransferase	NA
UHGV-0019042_14	eggNOG-mapper	1519439.JPJG01000060_gene1874	site-specific DNA-methyltransferase (adenine-specific) activity	NA
UHGV-0019042_14	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0019042_14	Structural annotation	PF05869, MF_01872, NF000058, COG4123	NA	NA
UHGV-0019042_15	PHROG	phrog_27610	NA	unknown function
UHGV-0019042_21	PHROG	phrog_38832	NA	unknown function
UHGV-0019042_21	eggNOG-mapper	665956.HMPREF1032_00143	NA	NA
UHGV-0019042_21	Structural annotation	PF18300, MF_01549, TIGR02450	NA	NA
UHGV-0019042_24	PHROG	phrog_9467	NA	unknown function
UHGV-0019042_24	UniRef90	UniRef90_UPI0015B3EAA7	Gp49 family protein	NA
UHGV-0019042_24	eggNOG-mapper	1519439.JPJG01000060_gene1880	NA	NA
UHGV-0019042_24	Pfam	PF13876	NA	Phage_gp49_66
UHGV-0019042_24	Pfam	PF14359	NA	DUF4406
UHGV-0019042_24	dbAPIS	APIS043	NA	NA
UHGV-0019042_24	Structural annotation	PF13876, PF14359, COG3613	NA	NA
UHGV-0019042_26	eggNOG-mapper	1519439.JPJG01000060_gene1882	NA	NA
UHGV-0019042_27	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0019042_27	eggNOG-mapper	1519439.JPJG01000060_gene1883	NA	NA
UHGV-0019042_27	Structural annotation	PF21578, NF033538	NA	NA
UHGV-0019042_28	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0019042_28	eggNOG-mapper	1519439.JPJG01000060_gene1884	DNA-packaging protein gp3	NA
UHGV-0019042_28	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0019042_28	Structural annotation	PF16677	NA	NA
UHGV-0019042_29	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0019042_29	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0019042_29	UniRef90	UniRef90_A0A3D4D7N6	PBSX family phage terminase large subunit	NA
UHGV-0019042_29	eggNOG-mapper	1519439.JPJG01000060_gene1885	phage Terminase large subunit	NA
UHGV-0019042_29	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0019042_29	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0019042_29	COG	COG1783	Phage terminase large subunit	NA
UHGV-0019042_29	Structural annotation	PF04466, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0019042_30	PHROG	phrog_156	portal protein	head and packaging
UHGV-0019042_30	eggNOG-mapper	1519439.JPJG01000060_gene1886	NA	NA
UHGV-0019042_30	Structural annotation	PF16510, MF_04120, TIGR01542, COG4695	NA	NA
UHGV-0019042_31	PHROG	phrog_30605	NA	unknown function
UHGV-0019042_32	PHROG	phrog_35275	NA	unknown function
UHGV-0019042_32	eggNOG-mapper	1519439.JPJG01000060_gene1888	NA	NA
UHGV-0019042_33	PHROG	phrog_24113	NA	unknown function
UHGV-0019042_33	eggNOG-mapper	1519439.JPJG01000060_gene1889	NA	NA
UHGV-0019042_33	Structural annotation	PF11133, COG5471	NA	NA
UHGV-0019042_34	PHROG	phrog_371	major head protein	head and packaging
UHGV-0019042_34	UniRef90	UniRef90_R6TFU9	Mu-like_gpT domain-containing protein	NA
UHGV-0019042_34	eggNOG-mapper	1519439.JPJG01000060_gene1890	NA	NA
UHGV-0019042_34	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0019042_35	PHROG	phrog_12105	NA	unknown function
UHGV-0019042_35	eggNOG-mapper	1519439.JPJG01000060_gene1891	NA	NA
UHGV-0019042_36	KOfam	K19721	COL5AS; collagen type V/XI/XXIV/XXVII, alpha	NA
UHGV-0019042_36	PHROG	phrog_819	tail protein	tail
UHGV-0019042_36	UniRef90	UniRef90_UPI00068BE71D	collagen-like protein	NA
UHGV-0019042_36	eggNOG-mapper	1519439.JPJG01000060_gene1892	Collagen triple helix repeat (20 copies)	NA
UHGV-0019042_36	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0019042_36	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0019042_36	Structural annotation	PF10651, NF033814	NA	NA
UHGV-0019042_40	PHROG	phrog_27545	NA	unknown function
UHGV-0019042_40	UniRef90	UniRef90_A0A2V2GQB6	Chitin-binding type-3 domain-containing protein	NA
UHGV-0019042_40	eggNOG-mapper	1519439.JPJG01000060_gene1895	NA	NA
UHGV-0019042_40	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0019042_40	Structural annotation	PF16170	NA	NA
UHGV-0019042_41	PHROG	phrog_9428	NA	unknown function
UHGV-0019042_41	UniRef90	UniRef90_A0A6I2RCP8	Serine/threonine protein kinase	NA
UHGV-0019042_41	eggNOG-mapper	1519439.JPJG01000059_gene1948	NA	NA
UHGV-0019042_43	PHROG	phrog_13256	NA	unknown function
UHGV-0019042_43	eggNOG-mapper	1519439.JPJG01000060_gene1898	NA	NA
UHGV-0019042_44	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0019042_44	PHROG	phrog_670	endolysin	lysis
UHGV-0019042_44	UniRef90	UniRef90_A0A3D4D877	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0019042_44	eggNOG-mapper	1519439.JPJG01000060_gene1899	Ami_2	NA
UHGV-0019042_44	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0019042_44	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0019042_44	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0019042_45	PHROG	phrog_7121	tail fiber protein	tail
UHGV-0019042_45	UniRef90	UniRef90_U2SWT4	Peptidase S74 domain-containing protein	NA
UHGV-0019042_45	eggNOG-mapper	1226322.HMPREF1545_00783	Chaperone of endosialidase	NA
UHGV-0019042_45	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0019042_45	Structural annotation	PF07902, NF041249	NA	NA
UHGV-0019042_47	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-0019042_47	eggNOG-mapper	1519439.JPJG01000060_gene1903	NA	NA
UHGV-0019042_47	Structural annotation	PF11134, TIGR03300, NF038126, COG1520	NA	NA
UHGV-0019042_48	eggNOG-mapper	1519439.JPJG01000060_gene1904	NA	NA
UHGV-0019042_49	UniRef90	UniRef90_A0A3D4D8G0	PBECR5 domain-containing protein	NA
UHGV-0019042_49	eggNOG-mapper	1519439.JPJG01000060_gene1905	NA	NA
UHGV-0019042_49	Pfam	PF18798	Large polyvalent protein-associated domain 3	LPD3
UHGV-0019042_50	KOfam	K19167	abiQ; protein AbiQ	NA
UHGV-0019042_50	PHROG	phrog_9764	NA	unknown function
UHGV-0019042_50	UniRef90	UniRef90_UPI00051BBB58	type III toxin-antitoxin system ToxN/AbiQ family toxin	NA
UHGV-0019042_50	eggNOG-mapper	1519439.JPJG01000060_gene1906	Toxin ToxN, type III toxin-antitoxin system	NA
UHGV-0019042_50	PADLOC	AbiQ	AbiQ	Abi
UHGV-0019042_50	Pfam	PF13958	Toxin ToxN, type III toxin-antitoxin system	ToxN_toxin
UHGV-0019042_50	Structural annotation	PF13958	NA	NA
UHGV-0019042_51	KOfam	K07448	mrr; restriction system protein	NA
UHGV-0019042_51	UniRef90	UniRef90_A0A3D4D7R4	SWIM-type domain-containing protein	NA
UHGV-0019042_51	eggNOG-mapper	613026.HRAG_00842	Restriction endonuclease	NA
UHGV-0019042_51	Pfam	PF04471	Restriction endonuclease	Mrr_cat