UHGV-0019087

Genome information

Genome length 36,230 bps

CDS count 50

Completeness 99.90% (high-quality)

geNomad score 0.9801

Prediction confidence Confident

Genome information
Genome ID	UHGV-0019087
vOTU ID	vOTU-011704
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-A-D_H_24_1651__NODE_2034_length_36230_cov_18.653943
BioSample	SAMEA4765932
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9801
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.71
Jumbo phage	No

Genome content
Genome length	36,230 bps
GC content	59.64%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	93.08%
Average CDS length	677.88 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0019087_1	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0019087_1	PHROG	phrog_35436	amidase	lysis
UHGV-0019087_1	UniRef90	UniRef90_A0A350TLR9	Peptidoglycan-binding domain-containing protein	NA
UHGV-0019087_1	eggNOG-mapper	1504823.CCMM01000008_gene1019	Ami_2	NA
UHGV-0019087_1	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0019087_1	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0019087_1	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0019087_1	Structural annotation	PF01510, PF01471, MF_04111, NF008758, COG3023	NA	NA
UHGV-0019087_2	PHROG	phrog_1129	holin	lysis
UHGV-0019087_2	UniRef90	UniRef90_A0A6A8VHY5	Enolase	NA
UHGV-0019087_2	eggNOG-mapper	1226322.HMPREF1545_00069	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0019087_2	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0019087_2	Structural annotation	PF06946	NA	NA
UHGV-0019087_3	PHROG	phrog_1863	NA	unknown function
UHGV-0019087_3	eggNOG-mapper	748224.HMPREF9436_01412	NA	NA
UHGV-0019087_5	Structural annotation	NF033746, COG3764	NA	NA
UHGV-0019087_6	UniRef90	UniRef90_A0A411ZUM8	Leucine-rich repeat domain-containing protein	NA
UHGV-0019087_9	eggNOG-mapper	762211.BSTEL_0612	NA	NA
UHGV-0019087_10	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0019087_10	UniRef90	UniRef90_A0A316NPB5	Peptidase S74 domain-containing protein	NA
UHGV-0019087_10	eggNOG-mapper	1123263.AUKY01000068_gene489	Phage minor structural protein	NA
UHGV-0019087_10	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0019087_10	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0019087_10	COG	COG4926	Phage-related protein	NA
UHGV-0019087_10	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0019087_11	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0019087_11	UniRef90	UniRef90_A0A173Z1X4	Phage-related protein	NA
UHGV-0019087_11	eggNOG-mapper	1160721.RBI_I01575	Phage tail protein	NA
UHGV-0019087_11	COG	COG4722	Phage-related protein YomH	NA
UHGV-0019087_11	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0019087_12	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0019087_12	UniRef90	UniRef90_A0A7X8M4B4	Phage tail protein (Fragment)	NA
UHGV-0019087_12	eggNOG-mapper	1216932.CM240_0625	tape measure	NA
UHGV-0019087_12	COG	COG5283	Phage-related tail protein	NA
UHGV-0019087_12	Structural annotation	PF05537, MF_04138, COG5281	NA	NA
UHGV-0019087_15	PHROG	phrog_88	major tail protein	tail
UHGV-0019087_15	UniRef90	UniRef90_G9YSC5	Phage major tail protein, phi13 family	NA
UHGV-0019087_15	eggNOG-mapper	33035.JPJF01000039_gene278	NA	NA
UHGV-0019087_15	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0019087_15	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0019087_16	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0019087_16	UniRef90	UniRef90_R6UNR2	HK97 gp10 family phage protein	NA
UHGV-0019087_16	eggNOG-mapper	908340.HMPREF9406_2573	NA	NA
UHGV-0019087_16	Structural annotation	TIGR01725	NA	NA
UHGV-0019087_17	eggNOG-mapper	1235798.C817_04588	NA	NA
UHGV-0019087_17	Structural annotation	PF05657	NA	NA
UHGV-0019087_18	PHROG	phrog_19734	NA	unknown function
UHGV-0019087_18	UniRef90	UniRef90_A0A6I7GNS7	Phage head closure protein	NA
UHGV-0019087_18	eggNOG-mapper	349161.Dred_2602	NA	NA
UHGV-0019087_18	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0019087_19	PHROG	phrog_749	NA	unknown function
UHGV-0019087_19	eggNOG-mapper	349161.Dred_2603	NA	NA
UHGV-0019087_20	PHROG	phrog_10	major head protein	head and packaging
UHGV-0019087_20	UniRef90	UniRef90_G9YSC0	Cadherin-like domain-containing protein	NA
UHGV-0019087_20	eggNOG-mapper	1235792.C808_00086	Phage capsid family	NA
UHGV-0019087_20	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0019087_20	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-0019087_20	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0019087_20	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0019087_20	Structural annotation	PF05065, PF12733, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0019087_21	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0019087_21	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0019087_21	UniRef90	UniRef90_A0A1Y4BT12	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0019087_21	eggNOG-mapper	349161.Dred_2605	Belongs to the peptidase S14 family	NA
UHGV-0019087_21	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0019087_21	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0019087_21	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0019087_22	PHROG	phrog_12	portal protein	head and packaging
UHGV-0019087_22	UniRef90	UniRef90_G9YSB8	Phage portal protein, HK97 family	NA
UHGV-0019087_22	eggNOG-mapper	349161.Dred_2606	Phage portal protein, HK97 family	NA
UHGV-0019087_22	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0019087_22	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0019087_22	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0019087_22	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0019087_23	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0019087_23	UniRef90	UniRef90_A0A6I7GGF0	Terminase	NA
UHGV-0019087_23	eggNOG-mapper	1235792.C808_00083	Phage terminase-like protein large subunit	NA
UHGV-0019087_23	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0019087_23	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0019087_23	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0019087_23	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0019087_24	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0019087_24	UniRef90	UniRef90_UPI00195E8788	P27 family phage terminase small subunit	NA
UHGV-0019087_24	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0019087_24	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0019087_25	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0019087_25	PHROG	phrog_21498	NA	unknown function
UHGV-0019087_25	UniRef90	UniRef90_A0A7X2P836	ParB domain-containing protein	NA
UHGV-0019087_25	eggNOG-mapper	469378.Ccur_02830	DNA binding	NA
UHGV-0019087_25	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0019087_25	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0019087_25	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0019087_25	Structural annotation	PF02195, PF05869, MF_02015, TIGR00180, TIGR01712, COG1475	NA	NA
UHGV-0019087_26	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0019087_26	UniRef90	UniRef90_G9YSB5	HNH domain-containing protein	NA
UHGV-0019087_26	eggNOG-mapper	86416.Clopa_0335	HNH nucleases	NA
UHGV-0019087_26	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0019087_26	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0019087_27	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0019087_27	eggNOG-mapper	693746.OBV_19950	NA	NA
UHGV-0019087_27	Structural annotation	PF21578	NA	NA
UHGV-0019087_32	PHROG	phrog_38832	NA	unknown function
UHGV-0019087_32	eggNOG-mapper	665956.HMPREF1032_03087	NA	NA
UHGV-0019087_32	Structural annotation	PF18300, MF_01549, TIGR02450	NA	NA
UHGV-0019087_33	PHROG	phrog_1384	Mom-like DNA modification protein	other
UHGV-0019087_33	eggNOG-mapper	665956.HMPREF1032_03086	COG NOG12663 non supervised orthologous group	NA
UHGV-0019087_33	Structural annotation	PF11124, MF_02210, NF040502, COG3818	NA	NA
UHGV-0019087_38	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0019087_38	PHROG	phrog_27290	NA	unknown function
UHGV-0019087_38	UniRef90	UniRef90_G4L1G7	HTH cro/C1-type domain-containing protein	NA
UHGV-0019087_38	eggNOG-mapper	693746.OBV_19860	ParB-like nuclease domain	NA
UHGV-0019087_38	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0019087_38	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0019087_38	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0019087_39	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0019087_39	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0019087_39	UniRef90	UniRef90_UPI000318E277	ParA family protein	NA
UHGV-0019087_39	eggNOG-mapper	1007096.BAGW01000033_gene1614	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	NA
UHGV-0019087_39	Pfam	PF13614	AAA domain	AAA_31
UHGV-0019087_39	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0019087_39	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0019087_40	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0019087_40	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0019087_40	UniRef90	UniRef90_UPI00195856D7	AAA family ATPase	NA
UHGV-0019087_40	eggNOG-mapper	1226322.HMPREF1545_00095	DnaB-like helicase N terminal domain	NA
UHGV-0019087_40	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0019087_40	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0019087_40	COG	COG0305	Replicative DNA helicase	NA
UHGV-0019087_40	Structural annotation	PF03796, PF00772, MF_04155, NF005240, COG0305	NA	NA
UHGV-0019087_41	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0019087_41	UniRef90	UniRef90_UPI001F3D92C2	helix-turn-helix domain-containing protein	NA
UHGV-0019087_41	eggNOG-mapper	742738.HMPREF9460_00851	Helix-turn-helix domain	NA
UHGV-0019087_41	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0019087_41	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0019087_41	Structural annotation	PF04182, NF040939, COG3355	NA	NA
UHGV-0019087_43	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0019087_43	UniRef90	UniRef90_G9YL68	DNA-binding helix-turn-helix protein	NA
UHGV-0019087_43	eggNOG-mapper	742738.HMPREF9460_00847	Helix-turn-helix XRE-family like proteins	NA
UHGV-0019087_43	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0019087_43	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0019087_43	Structural annotation	PF01381, MF_00535, NF040522, COG1476	NA	NA
UHGV-0019087_44	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0019087_44	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0019087_44	UniRef90	UniRef90_UPI000F0D19B9	helix-turn-helix domain-containing protein	NA
UHGV-0019087_44	eggNOG-mapper	1280680.AUJU01000017_gene3835	Helix-turn-helix domain	NA
UHGV-0019087_44	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0019087_44	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0019087_44	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0019087_45	UniRef90	UniRef90_A0A8J6JEY0	Helix-turn-helix transcriptional regulator	NA
UHGV-0019087_45	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0019087_45	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0019087_45	Structural annotation	PF13443, NF041951, COG1396	NA	NA
UHGV-0019087_46	eggNOG-mapper	1519439.JPJG01000061_gene2005	TM2 domain	NA
UHGV-0019087_46	Pfam	PF05154	TM2 domain	TM2
UHGV-0019087_46	COG	COG2314	NA	NA
UHGV-0019087_46	Structural annotation	PF08797, PF01668, TIGR00086, COG0691	NA	NA
UHGV-0019087_48	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0019087_48	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0019087_48	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0019087_48	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0019087_49	eggNOG-mapper	1262449.CP6013_2082	NA	NA
UHGV-0019087_49	Structural annotation	PF11631, TIGR03066	NA	NA
UHGV-0019087_50	KOfam	K14059	int; integrase	NA
UHGV-0019087_50	PHROG	phrog_1	integrase	integration and excision
UHGV-0019087_50	UniRef90	UniRef90_UPI001EDEB0AD	site-specific integrase	NA
UHGV-0019087_50	eggNOG-mapper	1226322.HMPREF1545_00144	Belongs to the 'phage' integrase family	NA
UHGV-0019087_50	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0019087_50	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0019087_50	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA