UHGV-0019128

Genome information

Genome length 33,733 bps

CDS count 41

Completeness 52.81% (medium-quality)

geNomad score 0.9422

Prediction confidence Confident

Genome information
Genome ID	UHGV-0019128
vOTU ID	vOTU-031238
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-A-D_J_18_1660__NODE_2691_length_33801_cov_7.216641
BioSample	SAMEA4765940
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	52.81% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9422
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	21.76
Jumbo phage	No

Genome content
Genome length	33,733 bps
GC content	23.94%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	41
CDS density	85.69%
Average CDS length	705.22 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0019128_3	KOfam	K03700	recU; recombination protein U	NA
UHGV-0019128_3	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0019128_3	UniRef90	UniRef90_UPI001C9B0BB2	Holliday junction resolvase RecU	NA
UHGV-0019128_3	eggNOG-mapper	386415.NT01CX_2186	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-0019128_3	Pfam	PF03838	Recombination protein U	RecU
UHGV-0019128_3	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-0019128_4	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0019128_4	PHROG	phrog_11992	NA	unknown function
UHGV-0019128_4	eggNOG-mapper	97138.C820_02844	CHC2 zinc finger	NA
UHGV-0019128_4	Pfam	PF13155	Toprim-like	Toprim_2
UHGV-0019128_4	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0019128_5	KOfam	K14059	int; integrase	NA
UHGV-0019128_5	PHROG	phrog_1	integrase	integration and excision
UHGV-0019128_5	UniRef90	UniRef90_A0A839K3P8	Tyrosine-type recombinase/integrase	NA
UHGV-0019128_5	eggNOG-mapper	537007.BLAHAN_06455	NA	NA
UHGV-0019128_5	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0019128_5	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0019128_5	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0019128_5	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0019128_6	KOfam	K03091	sigH; RNA polymerase sporulation-specific sigma factor	NA
UHGV-0019128_6	Pfam	PF04542	Sigma-70 region 2	Sigma70_r2
UHGV-0019128_6	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0019128_7	PHROG	phrog_443	holin	lysis
UHGV-0019128_7	UniRef90	UniRef90_UPI000C088FD8	holin	NA
UHGV-0019128_7	eggNOG-mapper	1235800.C819_01425	Putative lactococcus lactis phage r1t holin	NA
UHGV-0019128_7	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0019128_7	Structural annotation	PF16945	NA	NA
UHGV-0019128_8	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0019128_8	PHROG	phrog_7698	endolysin	lysis
UHGV-0019128_8	UniRef90	UniRef90_A0A396L691	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0019128_8	eggNOG-mapper	742733.HMPREF9469_05022	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0019128_8	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0019128_8	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0019128_8	Structural annotation	PF01510, PF18342, MF_04111, NF008758, COG3023, COG4991	NA	NA
UHGV-0019128_9	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0019128_9	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0019128_9	UniRef90	UniRef90_A0A2C1C0D0	Methyltransferase	NA
UHGV-0019128_9	eggNOG-mapper	444878.E3SQU5_9CAUD	N-methyltransferase activity	NA
UHGV-0019128_9	PADLOC	MTase_II_00037	Type II methyltransferase	RM
UHGV-0019128_9	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0019128_9	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-0019128_10	PHROG	phrog_918	NA	unknown function
UHGV-0019128_10	UniRef90	UniRef90_UPI00195F2652	NA	NA
UHGV-0019128_10	eggNOG-mapper	1504823.CCMM01000008_gene1021	NA	NA
UHGV-0019128_10	Pfam	PF19791	NA	DUF6275
UHGV-0019128_14	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0019128_14	UniRef90	UniRef90_K4ZM86	Phage minor capsid protein 2	NA
UHGV-0019128_14	eggNOG-mapper	717606.PaecuDRAFT_3120	Phage minor capsid protein 2	NA
UHGV-0019128_14	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0019128_14	COG	COG2369	NA	NA
UHGV-0019128_14	Structural annotation	PF06152	NA	NA
UHGV-0019128_15	PHROG	phrog_4257	NA	unknown function
UHGV-0019128_18	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0019128_18	eggNOG-mapper	1284775.HMPREF1640_03515	nuclear chromosome segregation	NA
UHGV-0019128_18	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0019128_19	PHROG	phrog_8355	NA	unknown function
UHGV-0019128_21	PHROG	phrog_820	major tail protein	tail
UHGV-0019128_22	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0019128_23	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0019128_23	UniRef90	UniRef90_UPI001C8D6722	minor capsid protein	NA
UHGV-0019128_23	eggNOG-mapper	1151292.QEW_2428	Minor capsid protein	NA
UHGV-0019128_23	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0019128_24	PHROG	phrog_8710	NA	unknown function
UHGV-0019128_27	PHROG	phrog_422	major head protein	head and packaging
UHGV-0019128_27	eggNOG-mapper	1121947.AUHK01000002_gene935	NA	NA
UHGV-0019128_27	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0019128_29	PHROG	phrog_533	portal protein	head and packaging
UHGV-0019128_29	UniRef90	UniRef90_A0A0H2YW57	Putative phage minor capsid protein	NA
UHGV-0019128_29	eggNOG-mapper	195103.CPF_0951	NA	NA
UHGV-0019128_29	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0019128_30	PHROG	phrog_30251	terminase large subunit	head and packaging
UHGV-0019128_30	UniRef90	UniRef90_UPI0005424D6A	phage terminase large subunit	NA
UHGV-0019128_30	eggNOG-mapper	469618.FVAG_00794	TIGRFAM Phage	NA
UHGV-0019128_30	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0019128_30	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0019128_30	COG	COG5410	NA	NA
UHGV-0019128_30	Structural annotation	PF17289, PF03237, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0019128_31	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0019128_31	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0019128_32	UniRef90	UniRef90_A0A1C5YT13	ResIII domain-containing protein	NA
UHGV-0019128_32	eggNOG-mapper	1410624.JNKK01000058_gene1139	Type III restriction enzyme res subunit	NA
UHGV-0019128_32	COG	COG1061	Superfamily II DNA or RNA helicase	NA