UHGV-0019158

Genome information

Genome length 37,146 bps

CDS count 47

Completeness 97.85% (high-quality)

geNomad score 0.9595

Prediction confidence Confident

Genome information
Genome ID	UHGV-0019158
vOTU ID	vOTU-011717
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_E_17_1727__NODE_3370_length_37146_cov_20.080067
BioSample	SAMEA4766007
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.85% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9595
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	18.78
Jumbo phage	No

Genome content
Genome length	37,146 bps
GC content	28.26%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	93.96%
Average CDS length	744.96 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0019158_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0019158_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0019158_1	UniRef90	UniRef90_UPI001BAD55EF	recombinase family protein	NA
UHGV-0019158_1	eggNOG-mapper	537013.CLOSTMETH_01697	Resolvase, N terminal domain	NA
UHGV-0019158_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0019158_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-0019158_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0019158_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0019158_1	Structural annotation	PF00239, PF07508, PF13408, NF041201, COG1961	NA	NA
UHGV-0019158_3	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0019158_3	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0019158_3	UniRef90	UniRef90_A0A2G5NUP7	XRE family transcriptional regulator	NA
UHGV-0019158_3	eggNOG-mapper	1321784.HMPREF1987_01096	Peptidase S24-like	NA
UHGV-0019158_3	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0019158_3	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0019158_3	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0019158_7	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0019158_7	eggNOG-mapper	1168289.AJKI01000067_gene1520	NA	NA
UHGV-0019158_7	Pfam	PF19808	NA	DUF6291
UHGV-0019158_7	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0019158_7	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0019158_7	Structural annotation	PF19808, PF07261, TIGR01446, COG3935	NA	NA
UHGV-0019158_8	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0019158_8	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0019158_8	UniRef90	UniRef90_A0A7K3Z8Y2	AAA family ATPase	NA
UHGV-0019158_8	eggNOG-mapper	1232449.BAHV02000016_gene1835	Participates in initiation and elongation during chromosome replication	NA
UHGV-0019158_8	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0019158_8	COG	COG0305	Replicative DNA helicase	NA
UHGV-0019158_8	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0019158_11	PHROG	phrog_2044	RNA polymerase beta subunit	DNA, RNA and nucleotide metabolism
UHGV-0019158_11	eggNOG-mapper	1636205.A0A0E3TAK6_9CAUD	NA	NA
UHGV-0019158_11	Structural annotation	MF_00337, NF010671, COG1722	NA	NA
UHGV-0019158_12	PHROG	phrog_1891	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0019158_12	UniRef90	UniRef90_A0A386PKY6	HNH endonuclease	NA
UHGV-0019158_12	eggNOG-mapper	696281.Desru_1079	HNH endonuclease	NA
UHGV-0019158_12	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0019158_12	Structural annotation	PF13392	NA	NA
UHGV-0019158_19	Structural annotation	PF20384, COG1862	NA	NA
UHGV-0019158_23	Structural annotation	PF10654	NA	NA
UHGV-0019158_25	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0019158_25	PHROG	phrog_1	integrase	integration and excision
UHGV-0019158_25	UniRef90	UniRef90_UPI000E3F9CA4	tyrosine-type recombinase/integrase	NA
UHGV-0019158_25	eggNOG-mapper	1232449.BAHV02000016_gene1840	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0019158_25	Pfam	PF02899	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_1
UHGV-0019158_25	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0019158_25	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0019158_25	Structural annotation	PF00589, PF13495, MF_02055, NF040815, COG4974	NA	NA
UHGV-0019158_26	Structural annotation	PF15456	NA	NA
UHGV-0019158_28	PHROG	phrog_2412	NA	unknown function
UHGV-0019158_28	UniRef90	UniRef90_R5AAQ5	NA	NA
UHGV-0019158_28	eggNOG-mapper	457398.HMPREF0326_03020	NA	NA
UHGV-0019158_29	KOfam	K21523	gp17; terminase, large subunit [EC:3.1.-.-]	NA
UHGV-0019158_29	PHROG	phrog_24361	terminase	head and packaging
UHGV-0019158_29	UniRef90	UniRef90_R5AHR8	Putative terminase large subunit	NA
UHGV-0019158_29	eggNOG-mapper	693746.OBV_23980	phage Terminase large subunit	NA
UHGV-0019158_29	COG	COG4373	Mu-like prophage FluMu protein gp28	NA
UHGV-0019158_29	Structural annotation	PF03237, PF17289, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0019158_31	PHROG	phrog_156	portal protein	head and packaging
UHGV-0019158_31	UniRef90	UniRef90_A0A0C9LYG8	Head-to-tail joining protein	NA
UHGV-0019158_31	eggNOG-mapper	268407.PWYN_12425	NA	NA
UHGV-0019158_31	Structural annotation	PF16510, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0019158_33	PHROG	phrog_1357	major head protein	head and packaging
UHGV-0019158_33	UniRef90	UniRef90_A0A8D9UHB3	Major capsid protein	NA
UHGV-0019158_33	eggNOG-mapper	696281.Desru_1092	NA	NA
UHGV-0019158_33	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0019158_33	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0019158_35	PHROG	phrog_13046	NA	unknown function
UHGV-0019158_35	eggNOG-mapper	693746.OBV_23880	NA	NA
UHGV-0019158_35	Structural annotation	PF20387	NA	NA
UHGV-0019158_36	PHROG	phrog_3287	virion structural protein	head and packaging
UHGV-0019158_36	eggNOG-mapper	1232449.BAHV02000016_gene1816	NA	NA
UHGV-0019158_36	Structural annotation	PF11134, MF_01282, TIGR03300, COG5276	NA	NA
UHGV-0019158_38	eggNOG-mapper	1232449.BAHV02000016_gene1805	NA	NA
UHGV-0019158_39	eggNOG-mapper	1121100.JCM6294_1111	Phage minor structural protein	NA
UHGV-0019158_39	COG	COG4926	Phage-related protein	NA
UHGV-0019158_40	PHROG	phrog_372	tail protein	tail
UHGV-0019158_40	UniRef90	UniRef90_UPI0011A17785	NA	NA
UHGV-0019158_40	eggNOG-mapper	1507.HMPREF0262_01190	NA	NA
UHGV-0019158_40	Pfam	PF05895	NA	DUF859
UHGV-0019158_40	COG	COG4675	Phage tail collar domain	NA
UHGV-0019158_40	Structural annotation	PF05895, MF_04116, NF010681, COG3291, COG2967	NA	NA
UHGV-0019158_41	PHROG	phrog_24267	NA	unknown function
UHGV-0019158_41	UniRef90	UniRef90_R5LPM8	Putative truncated prophage LambdaSa1 minor structural protein	NA
UHGV-0019158_41	eggNOG-mapper	764299.STRIC_1424	tail collar domain protein	NA
UHGV-0019158_41	COG	COG4675	Phage tail collar domain	NA
UHGV-0019158_41	Structural annotation	COG4675	NA	NA
UHGV-0019158_44	PHROG	phrog_13632	NA	unknown function
UHGV-0019158_45	Structural annotation	PF06946	NA	NA
UHGV-0019158_46	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0019158_46	PHROG	phrog_14988	peptidase	other
UHGV-0019158_46	UniRef90	UniRef90_R5A3B2	Peptidase_M23 domain-containing protein	NA
UHGV-0019158_46	eggNOG-mapper	1121024.AUCD01000008_gene2110	Peptidase family M23	NA
UHGV-0019158_46	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0019158_46	COG	COG4942	Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB	NA
UHGV-0019158_47	PHROG	phrog_7566	NA	unknown function
UHGV-0019158_47	UniRef90	UniRef90_UPI000E542A38	phosphoenolpyruvate carboxykinase	NA