UHGV-0019286

Genome information

vOTU vOTU-001918

Genome length 41,085 bps

CDS count 73

Completeness 100.00% (complete)

geNomad score 0.9813

Prediction confidence Confident

Genome information
Genome ID	UHGV-0019286
vOTU ID	vOTU-001918
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-A-D_J_23_1541__NODE_965_length_41162_cov_8.209955
BioSample	NA
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9813
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	55.31
Jumbo phage	No

Genome content
Genome length	41,085 bps
GC content	52.29%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	73
CDS density	93.82%
Average CDS length	532.32 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0019286_2	KOfam	K14059	int; integrase	NA
UHGV-0019286_2	PHROG	phrog_1	integrase	integration and excision
UHGV-0019286_2	UniRef90	UniRef90_A0A2Z4QB94	Tyr recombinase domain-containing protein	NA
UHGV-0019286_2	eggNOG-mapper	1226322.HMPREF1545_00144	Belongs to the 'phage' integrase family	NA
UHGV-0019286_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0019286_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0019286_2	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0019286_3	UniRef90	UniRef90_A0A3D3Y4M8	HTH cro/C1-type domain-containing protein	NA
UHGV-0019286_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0019286_3	Structural annotation	PF12844, MF_00535, NF041951, COG3655	NA	NA
UHGV-0019286_4	PHROG	phrog_5319	outer membrane protein	other
UHGV-0019286_4	eggNOG-mapper	445973.CLOBAR_01976	NA	NA
UHGV-0019286_4	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0019286_4	Structural annotation	PF03843, MF_01959, TIGR00752, NF041910, COG3390	NA	NA
UHGV-0019286_5	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0019286_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0019286_5	UniRef90	UniRef90_G5GMG9	HTH cro/C1-type domain-containing protein	NA
UHGV-0019286_5	eggNOG-mapper	679201.HMPREF9334_00450	sequence-specific DNA binding	NA
UHGV-0019286_5	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0019286_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0019286_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0019286_6	Structural annotation	PF21291, TIGR03070, COG3655	NA	NA
UHGV-0019286_9	eggNOG-mapper	1156919.QWC_27991	Flagellar Assembly Protein A	NA
UHGV-0019286_9	COG	COG1315	Flagellar assembly protein FapA, interacts with EIIAGlc	NA
UHGV-0019286_9	Structural annotation	PF03961	NA	NA
UHGV-0019286_10	PHROG	phrog_4973	NA	unknown function
UHGV-0019286_10	UniRef90	UniRef90_A0A3D3Y5F2	DNA-binding protein	NA
UHGV-0019286_10	eggNOG-mapper	584708.Apau_1668	Helix-turn-helix domain	NA
UHGV-0019286_10	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0019286_10	Structural annotation	PF14090, TIGR00373, COG4738	NA	NA
UHGV-0019286_12	PHROG	phrog_659	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0019286_12	UniRef90	UniRef90_A0A845QLQ8	NA	NA
UHGV-0019286_12	eggNOG-mapper	445972.ANACOL_01823	NA	NA
UHGV-0019286_12	Pfam	PF06378	NA	DUF1071
UHGV-0019286_12	Structural annotation	PF06378, TIGR00607, COG5055	NA	NA
UHGV-0019286_13	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0019286_13	UniRef90	UniRef90_B0PAM4	YqaJ domain-containing protein	NA
UHGV-0019286_13	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0019286_14	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0019286_14	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0019286_14	Structural annotation	PF05772	NA	NA
UHGV-0019286_15	PHROG	phrog_7545	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0019286_15	UniRef90	UniRef90_A0A417H726	HNH endonuclease	NA
UHGV-0019286_15	eggNOG-mapper	272630.MexAM1_META1p3945	HNH endonuclease	NA
UHGV-0019286_15	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0019286_15	Structural annotation	PF13392, PF13384, TIGR04381, COG2771	NA	NA
UHGV-0019286_16	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0019286_16	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0019286_16	UniRef90	UniRef90_A0A2V2CEG7	Single-stranded DNA-binding protein	NA
UHGV-0019286_16	eggNOG-mapper	693746.OBV_19910	Single-strand binding protein family	NA
UHGV-0019286_16	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0019286_16	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0019286_16	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0019286_16	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0019286_16	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0019286_17	PHROG	phrog_9327	primosomal protein	DNA, RNA and nucleotide metabolism
UHGV-0019286_17	UniRef90	UniRef90_UPI001126EECF	helix-turn-helix domain-containing protein	NA
UHGV-0019286_17	eggNOG-mapper	927704.SELR_18440	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0019286_17	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0019286_17	Structural annotation	PF07120, COG3756	NA	NA
UHGV-0019286_21	PHROG	phrog_3136	NA	unknown function
UHGV-0019286_21	UniRef90	UniRef90_A0A3D0HBD2	ASCH domain-containing protein	NA
UHGV-0019286_21	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0019286_21	Structural annotation	PF12961, NF008917, COG4933	NA	NA
UHGV-0019286_22	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0019286_22	PHROG	phrog_23224	DNA methyltransferase	other
UHGV-0019286_22	UniRef90	UniRef90_A0A329TLK1	Methyltransferase	NA
UHGV-0019286_22	eggNOG-mapper	718252.FP2_06750	DNA methylase	NA
UHGV-0019286_22	PADLOC	MTase_II_00172	Type II methyltransferase	RM
UHGV-0019286_22	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0019286_22	COG	COG0863	DNA modification methylase	NA
UHGV-0019286_22	Structural annotation	PF01555, NF010253, COG0863	NA	NA
UHGV-0019286_24	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0019286_24	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0019286_24	UniRef90	UniRef90_A0A3D3Y454	Adenylyl-sulfate reductase	NA
UHGV-0019286_24	eggNOG-mapper	1408437.JNJN01000032_gene2312	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0019286_24	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0019286_24	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0019286_24	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0019286_25	PHROG	phrog_38832	NA	unknown function
UHGV-0019286_28	UniRef90	UniRef90_A0A374AB28	Thymidylate synthase ThyX	NA
UHGV-0019286_28	eggNOG-mapper	935948.KE386495_gene2250	NA	NA
UHGV-0019286_28	Pfam	PF02511	Thymidylate synthase complementing protein	Thy1
UHGV-0019286_32	PHROG	phrog_801	endolysin; inhibits RNA polymerase	lysis
UHGV-0019286_32	UniRef90	UniRef90_A0A2K9P078	NA	NA
UHGV-0019286_32	eggNOG-mapper	1297570.MESS4_510075	NA	NA
UHGV-0019286_32	Pfam	PF18909	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
UHGV-0019286_32	Structural annotation	PF18909	NA	NA
UHGV-0019286_34	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0019286_34	UniRef90	UniRef90_A0A858BU04	NA	NA
UHGV-0019286_34	eggNOG-mapper	1034347.CAHJ01000051_gene25	NA	NA
UHGV-0019286_34	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0019286_34	Structural annotation	PF07374, MF_00245, TIGR02980, COG2739	NA	NA
UHGV-0019286_35	UniRef90	UniRef90_A0A2Z4Q9Z4	Nascent polypeptide-associated complex domain protein	NA
UHGV-0019286_35	eggNOG-mapper	1226322.HMPREF1545_00042	NA	NA
UHGV-0019286_35	Structural annotation	PF13542	NA	NA
UHGV-0019286_36	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0019286_36	PHROG	phrog_10250	NA	unknown function
UHGV-0019286_36	UniRef90	UniRef90_A0A1C6J947	Bacteriophage terminase large (ATPase) subunit and inactivated derivatives	NA
UHGV-0019286_36	eggNOG-mapper	1226322.HMPREF1545_00043	Phage terminase large subunit	NA
UHGV-0019286_36	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0019286_36	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0019286_36	COG	COG1783	Phage terminase large subunit	NA
UHGV-0019286_36	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0019286_38	PHROG	phrog_533	portal protein	head and packaging
UHGV-0019286_38	UniRef90	UniRef90_UPI000680A1DB	phage portal protein	NA
UHGV-0019286_38	eggNOG-mapper	693746.OBV_18040	NA	NA
UHGV-0019286_38	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0019286_38	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0019286_39	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0019286_39	UniRef90	UniRef90_UPI0006814CA4	phage minor capsid protein	NA
UHGV-0019286_39	eggNOG-mapper	693746.OBV_18050	Phage minor capsid protein 2	NA
UHGV-0019286_39	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0019286_39	COG	COG2369	NA	NA
UHGV-0019286_39	Structural annotation	PF06152	NA	NA
UHGV-0019286_40	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0019286_40	UniRef90	UniRef90_UPI00164D9F94	phage scaffolding protein	NA
UHGV-0019286_40	eggNOG-mapper	693746.OBV_18080	COG NOG36366 non supervised orthologous group	NA
UHGV-0019286_40	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0019286_40	Structural annotation	PF06810	NA	NA
UHGV-0019286_41	PHROG	phrog_212	major head protein	head and packaging
UHGV-0019286_41	UniRef90	UniRef90_A0A354MR33	Phage capsid protein	NA
UHGV-0019286_41	eggNOG-mapper	1232449.BAHV02000010_gene2714	NA	NA
UHGV-0019286_41	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0019286_42	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0019286_42	eggNOG-mapper	693746.OBV_18110	NA	NA
UHGV-0019286_43	Structural annotation	PF20536, MF_01370, TIGR02126	NA	NA
UHGV-0019286_44	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0019286_44	UniRef90	UniRef90_A0A4R1QRE8	Minor capsid protein	NA
UHGV-0019286_44	eggNOG-mapper	33035.JPJF01000106_gene3128	NA	NA
UHGV-0019286_44	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0019286_44	Structural annotation	PF11114	NA	NA
UHGV-0019286_45	PHROG	phrog_3266	tail completion	connector
UHGV-0019286_45	eggNOG-mapper	693746.OBV_18140	NA	NA
UHGV-0019286_45	Structural annotation	PF20765	NA	NA
UHGV-0019286_46	PHROG	phrog_3099	NA	unknown function
UHGV-0019286_46	eggNOG-mapper	693746.OBV_18150	NA	NA
UHGV-0019286_46	Structural annotation	TIGR02126	NA	NA
UHGV-0019286_47	PHROG	phrog_11299	NA	unknown function
UHGV-0019286_47	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-0019286_47	Structural annotation	PF10666	NA	NA
UHGV-0019286_48	PHROG	phrog_706	NA	unknown function
UHGV-0019286_48	UniRef90	UniRef90_UPI000682A80B	Gp15 family bacteriophage protein	NA
UHGV-0019286_48	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-0019286_48	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0019286_48	Structural annotation	PF06854	NA	NA
UHGV-0019286_49	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0019286_49	eggNOG-mapper	693746.OBV_18190	domain protein	NA
UHGV-0019286_49	COG	COG1511	NA	NA
UHGV-0019286_49	Structural annotation	PF05546, TIGR02559	NA	NA
UHGV-0019286_50	PHROG	phrog_1194	NA	unknown function
UHGV-0019286_50	eggNOG-mapper	1219626.HMPREF1639_07230	NA	NA
UHGV-0019286_50	Pfam	PF20458	NA	DUF6711
UHGV-0019286_50	Structural annotation	PF20458, TIGR02126, COG5437	NA	NA
UHGV-0019286_51	PHROG	phrog_32308	NA	unknown function
UHGV-0019286_51	eggNOG-mapper	1235797.C816_04180	NA	NA
UHGV-0019286_51	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0019286_53	Structural annotation	PF07761	NA	NA
UHGV-0019286_54	Structural annotation	PF10651, NF038186	NA	NA
UHGV-0019286_55	PHROG	phrog_31538	NA	unknown function
UHGV-0019286_55	eggNOG-mapper	428125.CLOLEP_01433	NA	NA
UHGV-0019286_56	PHROG	phrog_13589	NA	unknown function
UHGV-0019286_56	eggNOG-mapper	411460.RUMTOR_01324	NA	NA
UHGV-0019286_57	eggNOG-mapper	742733.HMPREF9469_05008	NA	NA
UHGV-0019286_58	PHROG	phrog_37900	NA	unknown function
UHGV-0019286_58	UniRef90	UniRef90_UPI001C3EA4DF	NA	NA
UHGV-0019286_58	eggNOG-mapper	552398.HMPREF0866_03098	NA	NA
UHGV-0019286_58	Pfam	PF19789	NA	DUF6273
UHGV-0019286_58	COG	COG3827	Cell pole-organizing protein PopZ	NA
UHGV-0019286_58	Structural annotation	PF19789	NA	NA
UHGV-0019286_59	PHROG	phrog_29409	NA	unknown function
UHGV-0019286_59	UniRef90	UniRef90_UPI001A9AA1DC	isoaspartyl peptidase	NA
UHGV-0019286_61	KOfam	K18454	deaA; chitin disaccharide deacetylase [EC:3.5.1.105]	NA
UHGV-0019286_61	PHROG	phrog_30034	NA	unknown function
UHGV-0019286_61	UniRef90	UniRef90_A0A1C5VT90	Chitinase A1	NA
UHGV-0019286_61	eggNOG-mapper	1235796.C815_00903	NA	NA
UHGV-0019286_61	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0019286_61	Structural annotation	PF14600	NA	NA
UHGV-0019286_62	PHROG	phrog_937	hemolysin	other
UHGV-0019286_62	eggNOG-mapper	1519439.JPJG01000023_gene533	NA	NA
UHGV-0019286_64	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0019286_64	UniRef90	UniRef90_A0A3E2TS79	NA	NA
UHGV-0019286_64	eggNOG-mapper	1256908.HMPREF0373_00479	NA	NA
UHGV-0019286_64	Structural annotation	PF14359	NA	NA
UHGV-0019286_66	PHROG	phrog_6918	holin	lysis
UHGV-0019286_66	UniRef90	UniRef90_G9YP36	Phage holin, LL-H family	NA
UHGV-0019286_66	eggNOG-mapper	1297617.JPJD01000020_gene301	Bacteriophage holin of superfamily 6 (Holin_LLH)	NA
UHGV-0019286_66	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0019286_66	Structural annotation	PF09682, TIGR01673	NA	NA
UHGV-0019286_67	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0019286_67	PHROG	phrog_670	endolysin	lysis
UHGV-0019286_67	UniRef90	UniRef90_A0A3D4VSU2	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0019286_67	eggNOG-mapper	1203606.HMPREF1526_00589	Ami_2	NA
UHGV-0019286_67	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0019286_67	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0019286_67	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0019286_68	Structural annotation	PF16509, MF_00245, NF001066, COG2739	NA	NA
UHGV-0019286_69	PHROG	phrog_25567	NA	unknown function
UHGV-0019286_69	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-0019286_73	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA